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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023183 ID=TCONS_00023183|Name=TCONS_00023183|organism=Clytia hemisphaerica|type=transcript|length=1429bpRun BLAST on NCBI transcript from alignment at sc0000446:32823..54634+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023183 ID=TCONS_00023183|Name=TCONS_00023183|organism=Clytia hemisphaerica|type=transcript|length=21812bp|location=Sequence derived from alignment at sc0000446:32823..54634+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00023183 vs. Swiss-Prot (Human)
Match: ANFY1 (Rabankyrin-5 OS=Homo sapiens GN=ANKFY1 PE=1 SV=2) HSP 1 Score: 385.185 bits (988), Expect = 2.868e-121 Identity = 206/470 (43.83%), Postives = 295/470 (62.77%), Query Frame = 1
Query: 55 MGDSEAAKLQKHLNLLRQEYVKLQNKTLDLEQKLAAVSATSGN-VSEDTYASQLLKTSNDLHDKETFTDITVSFSGKKVRAHRVILAARSKKWCTGDLADQNEIELEEASVEVGTALMKWVYTDKADIRTDESFIMDLVRVANRYSLGGLRNRCERILMSSVSVSNCIRFYQTAEDIGATELKKYCAEIITNHWDDLETKDFVGMSAPLLYDMFKSKSNFPLHFAVRHHREDIVFLYLIEFNLQLPGKLNEVEPETGLTPLQIALNERQESIANTLVQHNCDINSPNSEGKTLLHRSIEDGDSYAANFLIKQGADVKAITSDKNETTLHLAASFQPISVRAGSGKIASGEDMAGVCRLLLDYGVNINSVDVSGKTAIHRSIESKTEDVFSVLLADNNIDLEIRDNNGHVPLWMAIL-------ASGNKIEE------EASEKTGFASRLVDRGSSADAINHLTGDSLLHQ 1422
M + E AKL+KHL LLRQEYVKLQ K + E++ A ++A + S +++ S+LL DL+++E ++D+ + + + AH+ +LAARS W +L+ E++L +A+ EV +++W+YTD+ + R D+ F+ +L+++ANR+ L LR RCE+ +MS V+V NCIRFYQTAE++ A+ L YCAEII +HWDDL +DF MSA LLY M KSK+ +PLH A++ RED+VFLYLIE + QLPGKLNE + G L +AL+ R ESIA TLV H D++ + G +LLH+ I+ GD +AA FLIK GA V A T ET LHL A + S + S + S +MA + LL G N N D G+T +H SI + E VFS LL +DLE++D+ G LW+A+ S N E+ + ++ FA+RL+ RGS DA + TG+ LL +
Sbjct: 1 MAEEEVAKLEKHLMLLRQEYVKLQKKLAETEKRCALLAAQANKESSSESFISRLLAIVADLYEQEQYSDLKIKVGDRHISAHKFVLAARSDSWSLANLSSTKELDLSDANPEVTMTMLRWIYTDELEFREDDVFLTELMKLANRFQLQLLRERCEKGVMSLVNVRNCIRFYQTAEELNASTLMNYCAEIIASHWDDLRKEDFSSMSAQLLYKMIKSKTEYPLHKAIKVEREDVVFLYLIEMDSQLPGKLNEAD-HNGDLALDLALSRRLESIATTLVSHKADVDMVDKSGWSLLHKGIQRGDLFAATFLIKNGAFVNAATLGAQETPLHLVALY---SSKKHSADVMS--EMAQIAEALLQAGANPNMQDSKGRTPLHVSIMAGNEYVFSQLLQCKQLDLELKDHEGSTALWLAVQHITVSSDQSVNPFEDVPVVNGTSFDENSFAARLIQRGSHTDAPDTATGNCLLQR 464 HSP 2 Score: 91.6633 bits (226), Expect = 1.961e-19 Identity = 64/202 (31.68%), Postives = 96/202 (47.52%), Query Frame = 1
Query: 805 VEPETGLTPLQIALNERQESIANTLVQHNCDINS--PNSEG--KTLLHRSIEDGDSYAANFLIKQGADVKAIT-----------SDKNETTLHLAASFQPISVRAGSGKIASGEDMAGVCRLLLDYGVNINSVDVSGKTAIHRSIESKTEDVFSVLLADNNIDLEIRDNNGHVPLWMAILASGNKIEEEASEKTGFASRLVD 1365
V E G PL +AL E IA+TLV+H CD P G +TLLHR+I++ + A FLI+ G DV + + +T LHLAAS+ + + LL++G N+N+ D G+T IH +I S+ + +L++ +I L +RD G P A+ NK E ++ A+ VD
Sbjct: 683 VPDEKGNPPLWLALANNLEDIASTLVRHGCDATCWGPGPGGCLQTLLHRAIDENNEPTACFLIRSGCDVNSPRQPGANGEGEEEARDGQTPLHLAASW----------------GLEETVQCLLEFGANVNAQDAEGRTPIHVAISSQHGVIIQLLVSHPDIHLNVRDRQGLTPFACAMTFKNNKSAEAILKRESGAAEQVD 868 The following BLAST results are available for this feature:
BLAST of TCONS_00023183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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