TCONS_00023179 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023179
Unique NameTCONS_00023179
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023179 ID=TCONS_00023179|Name=TCONS_00023179|organism=Clytia hemisphaerica|type=transcript|length=1741bp
GAGAAATGGTATAGAAAAGACTCTcgaaacttttttgattgaaCTATTGC
TTACTTGACTGTTTCCTGATGCAGTGCACTTACTTATTAGTAAATTATGT
TCTAGTTAAAATCCATTAACACCATTAATGTTCCTAACATTAAAATTCAG
CAAGTAAATTTATGTATTGGTAACGAAAAAATGAATCGAGAAAGATAAAT
ATTTTacttattttctcattcttttAGCTGTGTGATTGGATAATTTCTCT
TCGTCACCATCAGCAGATTCATCAGTCAAAGTGTTTTTGGTAATGGTATT
GTCTGGTAAGTGATTTTGCAGGAAAATATTATCATCATCGTCATCTTGAG
GTAACAAATCCTCTTGGACAATCTCTGTTTCAATGTGTTCCGTATCTTCA
AACCCATTGCTTTCATTTCCAATGCCGATGTCTTGGCTTCCATTTTGGAT
GTCTTCAGAGAGGTTAtcattctgattggttgatacAACACTAACCATTG
AATTCATTCTTTCAAACCACTCgccatcaaaattaaaaatattctctGTT
GATCCGCCAAGATCGTTTCTGGGTTCAATAGCAAACAACACATAGCGAAC
ACCAGACAAAAGCTTTGAGACTGCGTGTAGCTCCTTTTTGTGGATTGTCA
CAGTGCCTGGTGGTCTTTGTGGGATGTAGAGACCAGTATCCTTAGCGTAA
AAACAGAGTCGTCCACCTACATAAGATTTGTCACTATTCAATGTGTATTG
CACCACAGCGCAAGAATACCCTCCATCAACATGCCATGGTAGACAACCTA
AAGTTGGTGCTGTTCTACGAATCACTAATTTTAAAGGTTTCGCAAGAGGG
TGATAGCTTGTTAATTTTTGTTCTATTGtgtttgatttcaaaattctaTT
GATAATGCCAGGAaagaatataattttgatgtctTCAAGAATTGACTGGG
ATTTCCCTTGAACCTTTTGCAAAGAATGGACAAAATCGGCAACACCCATT
AGCTTCTGACGTTGAATGTTATTCAATAAATAGTCTCCTGTGTGATGAAG
AAGAACCTCCGATTGTTTTGAACCACGGCATTGAAGTCGTTTAGATTCAA
GGAGGTCCAGTGGCACTTCACTTCCTCGAATGTCTCCAGTCAAGAGAAAT
GAAATCAAAGGCTCACTTGAATTGTAAGCTGCAAAGTTTGAAATCATACC
ACGCAATCTCAAAACGAGGTGCAGCACATCATTGTTTTTTAGCATATAGA
ATCCTAAAGGATGTTCATCTTTAAGCTGCTGTCCAGAGAAAATCAAGCGT
TGTTGGTCAGGAGGAATACCTTCCTTATCCTGaacttttaatttcaaatc
ATCAACAGTATTGTGAAAGTTTAAGCCTTCCAAGATAATCGTCTTTCCTG
TCAGTGTTTTgatgaatattttcatttttattatgaCTGTTGATTAAAAA
AGGAAACAGGGAAGCTTCAAGTGGGGTACAAAATTGGTGTTTGATGTTGC
CTTAgaaggccaatttaatttgttgttttacaggcCAAGCTActcaaaaa
agagggtcggtcggtcagcgaaaaaataaaaagaaaagaagaatttcacc
tataaaatctcctgaaaaggcagcaaaaactactacatatcttaacaaaa
aatgcaaaatagatataaaaagacacaaaaaggtaAAATTCatagatgaa
atgaaaaattgaacataaaattcttaaaacctTGGGAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00023179-protein

>TCONS_00023179-protein ID=TCONS_00023179-protein|Name=TCONS_00023179-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp
MKIFIKTLTGKTIILEGLNFHNTVDDLKLKVQDKEGIPPDQQRLIFSGQQ
LKDEHPLGFYMLKNNDVLHLVLRLRGMISNFAAYNSSEPLISFLLTGDIR
GSEVPLDLLESKRLQCRGSKQSEVLLHHTGDYLLNNIQRQKLMGVADFVH
SLQKVQGKSQSILEDIKIIFFPGIINRILKSNTIEQKLTSYHPLAKPLKL
VIRRTAPTLGCLPWHVDGGYSCAVVQYTLNSDKSYVGGRLCFYAKDTGLY
IPQRPPGTVTIHKKELHAVSKLLSGVRYVLFAIEPRNDLGGSTENIFNFD
GEWFERMNSMVSVVSTNQNDNLSEDIQNGSQDIGIGNESNGFEDTEHIET
EIVQEDLLPQDDDDDNIFLQNHLPDNTITKNTLTDESADGDEEKLSNHTA
KRMRK
Run BLAST on NCBI

transcript from alignment at sc0000444:190865..192605

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023179 ID=TCONS_00023179|Name=TCONS_00023179|organism=Clytia hemisphaerica|type=transcript|length=1741bp|location=Sequence derived from alignment at sc0000444:190865..192605 (Clytia hemisphaerica)
GTTTTCCCAaggttttaagaattttatgttcaatttttcatttcatctat
GAATTTtacctttttgtgtctttttatatctattttgcattttttgttaa
gatatgtagtagtttttgctgccttttcaggagattttataggtgaaatt
cttcttttctttttattttttcgctgaccgaccgaccctcttttttgagT
AGCTTGgcctgtaaaacaacaaattaaattggccttcTAAGGCAACATCA
AACACCAATTTTGTACCCCACTTGAAGCTTCCCTGTTTCCTTTTTTAATC
AACAGtcataataaaaatgaaaatattcatcAAAACACTGACAGGAAAGA
CGATTATCTTGGAAGGCTTAAACTTTCACAATACTGTTGATgatttgaaa
ttaaaagttCAGGATAAGGAAGGTATTCCTCCTGACCAACAACGCTTGAT
TTTCTCTGGACAGCAGCTTAAAGATGAACATCCTTTAGGATTCTATATGC
TAAAAAACAATGATGTGCTGCACCTCGTTTTGAGATTGCGTGGTATGATT
TCAAACTTTGCAGCTTACAATTCAAGTGAGCCTTTGATTTCATTTCTCTT
GACTGGAGACATTCGAGGAAGTGAAGTGCCACTGGACCTCCTTGAATCTA
AACGACTTCAATGCCGTGGTTCAAAACAATCGGAGGTTCTTCTTCATCAC
ACAGGAGACTATTTATTGAATAACATTCAACGTCAGAAGCTAATGGGTGT
TGCCGATTTTGTCCATTCTTTGCAAAAGGTTCAAGGGAAATCCCAGTCAA
TTCTTGAagacatcaaaattatattcttTCCTGGCATTATCAAtagaatt
ttgaaatcaaacaCAATAGAACAAAAATTAACAAGCTATCACCCTCTTGC
GAAACCTTTAAAATTAGTGATTCGTAGAACAGCACCAACTTTAGGTTGTC
TACCATGGCATGTTGATGGAGGGTATTCTTGCGCTGTGGTGCAATACACA
TTGAATAGTGACAAATCTTATGTAGGTGGACGACTCTGTTTTTACGCTAA
GGATACTGGTCTCTACATCCCACAAAGACCACCAGGCACTGTGACAATCC
ACAAAAAGGAGCTACACGCAGTCTCAAAGCTTTTGTCTGGTGTTCGCTAT
GTGTTGTTTGCTATTGAACCCAGAAACGATCTTGGCGGATCAACagagaa
tatttttaattttgatggcGAGTGGTTTGAAAGAATGAATTCAATGGTTA
GTGTTgtatcaaccaatcagaatgaTAACCTCTCTGAAGACATCCAAAAT
GGAAGCCAAGACATCGGCATTGGAAATGAAAGCAATGGGTTTGAAGATAC
GGAACACATTGAAACAGAGATTGTCCAAGAGGATTTGTTACCTCAAGATG
ACGATGATGATAATATTTTCCTGCAAAATCACTTACCAGACAATACCATT
ACCAAAAACACTTTGACTGATGAATCTGCTGATGGTGACGAAGAGAAATT
ATCCAATCACACAGCTaaaagaatgagaaaataagtAAAATATTTATCTT
TCTCGATTCATTTTTTCGTTACCAATACATAAATTTACTTGCTGAATTTT
AATGTTAGGAACATTAATGGTGTTAATGGATTTTAACTAGAACATAATTT
ACTAATAAGTAAGTGCACTGCATCAGGAAACAGTCAAGTAAGCAATAGtt
caatcaaaaaagtttcgAGAGTCTTTTCTATACCATTTCTC

Coding sequence (CDS) from alignment at sc0000444:190865..192605

>TCONS_00023179 ID=TCONS_00023179|Name=TCONS_00023179|organism=Clytia hemisphaerica|type=CDS|length=1218bp|location=Sequence derived from alignment at sc0000444:190865..192605 (Clytia hemisphaerica)
atgaaaatattcatcAAAACACTGACAGGAAAGACGATTATCTTGGAAGG
CTTAAACTTTCACAATACTGTTGATgatttgaaattaaaagttCAGGATA
AGGAAGGTATTCCTCCTGACCAACAACGCTTGATTTTCTCTGGACAGCAG
CTTAAAGATGAACATCCTTTAGGATTCTATATGCTAAAAAACAATGATGT
GCTGCACCTCGTTTTGAGATTGCGTGGTATGATTTCAAACTTTGCAGCTT
ACAATTCAAGTGAGCCTTTGATTTCATTTCTCTTGACTGGAGACATTCGA
GGAAGTGAAGTGCCACTGGACCTCCTTGAATCTAAACGACTTCAATGCCG
TGGTTCAAAACAATCGGAGGTTCTTCTTCATCACACAGGAGACTATTTAT
TGAATAACATTCAACGTCAGAAGCTAATGGGTGTTGCCGATTTTGTCCAT
TCTTTGCAAAAGGTTCAAGGGAAATCCCAGTCAATTCTTGAagacatcaa
aattatattcttTCCTGGCATTATCAAtagaattttgaaatcaaacaCAA
TAGAACAAAAATTAACAAGCTATCACCCTCTTGCGAAACCTTTAAAATTA
GTGATTCGTAGAACAGCACCAACTTTAGGTTGTCTACCATGGCATGTTGA
TGGAGGGTATTCTTGCGCTGTGGTGCAATACACATTGAATAGTGACAAAT
CTTATGTAGGTGGACGACTCTGTTTTTACGCTAAGGATACTGGTCTCTAC
ATCCCACAAAGACCACCAGGCACTGTGACAATCCACAAAAAGGAGCTACA
CGCAGTCTCAAAGCTTTTGTCTGGTGTTCGCTATGTGTTGTTTGCTATTG
AACCCAGAAACGATCTTGGCGGATCAACagagaatatttttaattttgat
ggcGAGTGGTTTGAAAGAATGAATTCAATGGTTAGTGTTgtatcaaccaa
tcagaatgaTAACCTCTCTGAAGACATCCAAAATGGAAGCCAAGACATCG
GCATTGGAAATGAAAGCAATGGGTTTGAAGATACGGAACACATTGAAACA
GAGATTGTCCAAGAGGATTTGTTACCTCAAGATGACGATGATGATAATAT
TTTCCTGCAAAATCACTTACCAGACAATACCATTACCAAAAACACTTTGA
CTGATGAATCTGCTGATGGTGACGAAGAGAAATTATCCAATCACACAGCT
aaaagaatgagaaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013034XLOC_013034Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023179-proteinTCONS_00023179-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023179-exon-sc0000444-1491911889:190865..192605TCONS_00023179-exon-sc0000444-1491911889:190865..192605Clytia hemisphaericaexon
TCONS_00023179-exon-sc0000444-1510915933:190865..192605TCONS_00023179-exon-sc0000444-1510915933:190865..192605Clytia hemisphaericaexon
TCONS_00023179-exon-sc0000444-1575043694:190865..192605TCONS_00023179-exon-sc0000444-1575043694:190865..192605Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000444supercontigsc0000444:190865..192605 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.41263	1.4227	1.12748	0.564357	0.71828	0.567595	0.982509	0.613209	0.331749	0.555956	0.539625	0.323882	0.462046	0.639785	0.276145	0.381016	0.451996	0.712741	0.344641	0.463683	0.85083	0.884616	0.637255	0.796616	4.59975	4.41583	0.381047	0.304998	0.53977	0.366627
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin
IPR000626Ubiquitin_dom
IPR019954Ubiquitin_CS
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00023179 vs. Swiss-Prot (Human)
Match: RL40 (Ubiquitin-60S ribosomal protein L40 OS=Homo sapiens GN=UBA52 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.344e-22
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = -2 
Query: 1192 MKIFIKTLTGKTIILEGLNFHNTVDDLKLKVQDKEGIPPDQQRLIFSGQQLKDEHPLGFYMLKNNDVLHLVLRLRGMI 1425
            M+IF+KTLTGKTI LE +   +T++++K K+QDKEGIPPDQQRLIF+G+QL+D   L  Y ++    LHLVLRLRG I
Sbjct:    1 MQIFVKTLTGKTITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77
The following BLAST results are available for this feature:
BLAST of TCONS_00023179 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL401.344e-2260.26Ubiquitin-60S ribosomal protein L40 OS=Homo sapien... [more]
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