TCONS_00023174 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023174
Unique NameTCONS_00023174
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023174 ID=TCONS_00023174|Name=TCONS_00023174|organism=Clytia hemisphaerica|type=transcript|length=1479bp
atgatttcagatttttttctcaaaaaaaaacatttttaattaagTTATTA
GCCCAATAAAATAACAAGGAAAAAATATAAGCACCAAGCATGATTTTTAA
TGATTAAATGATGAATAATTATAActttaaataccaaaatttaaaaacaa
taatacaaagaaaaaaatacaaagaggTGTTTGGTGACAATAAAAAATCA
GTTTACTTCCTTCTGCTAGATTTTCTCACAGAGTTCCatttatcaaattc
aaaattagataaaaataatACATCAGACAAAGACTGTTCAACTGCCATTT
CCTCAACTCGATCACTCATTGGCTTGTAAGATATACCTCTCGGTTTAAAT
CGAAATTTTGGTCCAAAGTTAAAGGTTACAGTTGCATTTTTGTAGATAGA
TGCAGCAGGAAAATAAGGACCACCATAAATATCTTCAAAAGCAGTACCTT
GAGAGCGCCCATTTTTAAAAAAGGTAATTTTGCATCCTTTCTTTGGTTGT
ATAACTTTATCCATCTGCTCTGAGACATCTTTTTCTTCATAATGCAAATG
ACTTTTGAACTTGATAAGTGCTTTATCTTTGTATGTTTTTGGGAGATAAT
TGCTGTCATAAGCCTCTGGCTCCACAAGGCTAATGTGAAATCCTAATACA
TCACCTTCTTTGTAGCCATTACTATAGTGTTTTCCTTTgctttgatgaaa
ttttgttcCTTTGATAGAACGCCAAGAATAACTAAATTTGTCATACCCAA
GGGGTGCTTGAAGATTGCCATAGGGTTGACACCAGCCCAATCTTAATGCT
GAACCTTCTGGCATGCTAGTGgctttgatttcaaaataccACTCACCCTT
AGTGACACTGTAATTAGCTCTTATGCTTGAATAACCTTTTTCACCAGTAA
CAGATAAACGATCATCAGAGACCTTCAACTGAGGAGCTCTATCATGTAAG
GATAAACAAACTTCAGGCTGTAAACAATGCCTGTAAATCTCTCCAGGGAT
TGGTTTACCAGCGAATGAATccatttcaaaatcttttgtaTCTGCATGAG
GATCAGGTTCTGCCAGGATGTAACCATATCCATCTTTGTTGTATGGATGT
TCTAAAGGATATCCATGTGGTGGCAATGCAGTTGTCACAGTTGAAtcatt
ttttgctcttttgttTACAGTACTAACATTCCTCTCATTATCAGCAGTTC
TTCTTTTACCTCTTGCTGTTTTCTTAGATTTGGATTGAGCATCTGTGATC
TGAGAATCATTTTGCAAATCATCCTCATCCATTTTTTCTAccattatttt
ttccttatttgtTTTTACTAACAATCttatcttttttcttctctGAGAAG
AATGTAATAAGGGTTTAAAATAAGGAAGGAGTTTGATTTAAAAAGTTAAA
CCTTTGGAAATAATAATAGAAATAATAATTGACATGCCAATTGGAGCCAC
CTCATGAAGACTGAAAAATTcaaatcgag
Run BLAST on NCBI

protein sequence of TCONS_00023174-protein

>TCONS_00023174-protein ID=TCONS_00023174-protein|Name=TCONS_00023174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
MVEKMDEDDLQNDSQITDAQSKSKKTARGKRRTADNERNVSTVNKRAKND
STVTTALPPHGYPLEHPYNKDGYGYILAEPDPHADTKDFEMDSFAGKPIP
GEIYRHCLQPEVCLSLHDRAPQLKVSDDRLSVTGEKGYSSIRANYSVTKG
EWYFEIKATSMPEGSALRLGWCQPYGNLQAPLGYDKFSYSWRSIKGTKFH
QSKGKHYSNGYKEGDVLGFHISLVEPEAYDSNYLPKTYKDKALIKFKSHL
HYEEKDVSEQMDKVIQPKKGCKITFFKNGRSQGTAFEDIYGGPYFPAASI
YKNATVTFNFGPKFRFKPRGISYKPMSDRVEEMAVEQSLSDVLFLSNFEF
DKWNSVRKSSRRK
Run BLAST on NCBI

transcript from alignment at sc0000444:121885..123363

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023174 ID=TCONS_00023174|Name=TCONS_00023174|organism=Clytia hemisphaerica|type=transcript|length=1479bp|location=Sequence derived from alignment at sc0000444:121885..123363 (Clytia hemisphaerica)
ctcgatttgAATTTTTCAGTCTTCATGAGGTGGCTCCAATTGGCATGTCA
ATTATTATTTCTATTATTATTTCCAAAGGTTTAACTTTTTAAATCAAACT
CCTTCCTTATTTTAAACCCTTATTACATTCTTCTCagagaagaaaaaaga
taaGATTGTTAGTAAAAacaaataaggaaaaaataatggTAGAAAAAATG
GATGAGGATGATTTGCAAAATGATTCTCAGATCACAGATGCTCAATCCAA
ATCTAAGAAAACAGCAAGAGGTAAAAGAAGAACTGCTGATAATGAGAGGA
ATGTTAGTACTGTAaacaaaagagcaaaaaatgaTTCAACTGTGACAACT
GCATTGCCACCACATGGATATCCTTTAGAACATCCATACAACAAAGATGG
ATATGGTTACATCCTGGCAGAACCTGATCCTCATGCAGAtacaaaagatt
ttgaaatggATTCATTCGCTGGTAAACCAATCCCTGGAGAGATTTACAGG
CATTGTTTACAGCCTGAAGTTTGTTTATCCTTACATGATAGAGCTCCTCA
GTTGAAGGTCTCTGATGATCGTTTATCTGTTACTGGTGAAAAAGGTTATT
CAAGCATAAGAGCTAATTACAGTGTCACTAAGGGTGAGTggtattttgaa
atcaaagcCACTAGCATGCCAGAAGGTTCAGCATTAAGATTGGGCTGGTG
TCAACCCTATGGCAATCTTCAAGCACCCCTTGGGTATGACAAATTTAGTT
ATTCTTGGCGTTCTATCAAAGgaacaaaatttcatcaaagcAAAGGAAAA
CACTATAGTAATGGCTACAAAGAAGGTGATGTATTAGGATTTCACATTAG
CCTTGTGGAGCCAGAGGCTTATGACAGCAATTATCTCCCAAAAACATACA
AAGATAAAGCACTTATCAAGTTCAAAAGTCATTTGCATTATGAAGAAAAA
GATGTCTCAGAGCAGATGGATAAAGTTATACAACCAAAGAAAGGATGCAA
AATTACCTTTTTTAAAAATGGGCGCTCTCAAGGTACTGCTTTTGAAGATA
TTTATGGTGGTCCTTATTTTCCTGCTGCATCTATCTACAAAAATGCAACT
GTAACCTTTAACTTTGGACCAAAATTTCGATTTAAACCGAGAGGTATATC
TTACAAGCCAATGAGTGATCGAGTTGAGGAAATGGCAGTTGAACAGTCTT
TGTCTGATGTattatttttatctaattttgaatttgataaatGGAACTCT
GTGAGAAAATCTAGCAGAAGGAAGTAAACTGATTTTTTATTGTCACCAAA
CAcctctttgtatttttttctttgtattattgtttttaaattttggtatt
taaagTTATAATTATTCATCATTTAATCATTAAAAATCATGCTTGGTGCT
TATATTTTTTCCTTGTTATTTTATTGGGCTAATAActtaattaaaaatgt
ttttttttgagaaaaaaatctgaaatcat

Coding sequence (CDS) from alignment at sc0000444:121885..123363

>TCONS_00023174 ID=TCONS_00023174|Name=TCONS_00023174|organism=Clytia hemisphaerica|type=CDS|length=1092bp|location=Sequence derived from alignment at sc0000444:121885..123363 (Clytia hemisphaerica)
atggTAGAAAAAATGGATGAGGATGATTTGCAAAATGATTCTCAGATCAC
AGATGCTCAATCCAAATCTAAGAAAACAGCAAGAGGTAAAAGAAGAACTG
CTGATAATGAGAGGAATGTTAGTACTGTAaacaaaagagcaaaaaatgaT
TCAACTGTGACAACTGCATTGCCACCACATGGATATCCTTTAGAACATCC
ATACAACAAAGATGGATATGGTTACATCCTGGCAGAACCTGATCCTCATG
CAGAtacaaaagattttgaaatggATTCATTCGCTGGTAAACCAATCCCT
GGAGAGATTTACAGGCATTGTTTACAGCCTGAAGTTTGTTTATCCTTACA
TGATAGAGCTCCTCAGTTGAAGGTCTCTGATGATCGTTTATCTGTTACTG
GTGAAAAAGGTTATTCAAGCATAAGAGCTAATTACAGTGTCACTAAGGGT
GAGTggtattttgaaatcaaagcCACTAGCATGCCAGAAGGTTCAGCATT
AAGATTGGGCTGGTGTCAACCCTATGGCAATCTTCAAGCACCCCTTGGGT
ATGACAAATTTAGTTATTCTTGGCGTTCTATCAAAGgaacaaaatttcat
caaagcAAAGGAAAACACTATAGTAATGGCTACAAAGAAGGTGATGTATT
AGGATTTCACATTAGCCTTGTGGAGCCAGAGGCTTATGACAGCAATTATC
TCCCAAAAACATACAAAGATAAAGCACTTATCAAGTTCAAAAGTCATTTG
CATTATGAAGAAAAAGATGTCTCAGAGCAGATGGATAAAGTTATACAACC
AAAGAAAGGATGCAAAATTACCTTTTTTAAAAATGGGCGCTCTCAAGGTA
CTGCTTTTGAAGATATTTATGGTGGTCCTTATTTTCCTGCTGCATCTATC
TACAAAAATGCAACTGTAACCTTTAACTTTGGACCAAAATTTCGATTTAA
ACCGAGAGGTATATCTTACAAGCCAATGAGTGATCGAGTTGAGGAAATGG
CAGTTGAACAGTCTTTGTCTGATGTattatttttatctaattttgaattt
gataaatGGAACTCTGTGAGAAAATCTAGCAGAAGGAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013029XLOC_013029Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023174-proteinTCONS_00023174-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023174-exon-sc0000444-1491911889:121885..123363TCONS_00023174-exon-sc0000444-1491911889:121885..123363Clytia hemisphaericaexon
TCONS_00023174-exon-sc0000444-1510915933:121885..123363TCONS_00023174-exon-sc0000444-1510915933:121885..123363Clytia hemisphaericaexon
TCONS_00023174-exon-sc0000444-1575043694:121885..123363TCONS_00023174-exon-sc0000444-1575043694:121885..123363Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000444supercontigsc0000444:121885..123363 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
53.3563	47.3181	15.2455	10.088	20.682	16.2837	15.3358	16.1056	12.6648	12.2758	8.68875	6.08374	5.33213	5.34452	6.50364	6.70704	14.6796	8.98469	2.91019	2.57918	8.99412	8.41833	51.1199	41.1464	7.82813	11.8314	4.51996	5.0691	26.5721	29.1577
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003877SPRY_dom
IPR001870B30.2/SPRY
IPR013320ConA-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00023174 vs. Swiss-Prot (Human)
Match: ASH2L (Set1/Ash2 histone methyltransferase complex subunit ASH2 OS=Homo sapiens GN=ASH2L PE=1 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 3.843e-128
Identity = 192/335 (57.31%), Postives = 243/335 (72.54%), Query Frame = -3 
Query:  242 AQSKSKKTARGKRRTADNERNVSTVNKRAKNDSTVTTA-LPPHGYPLEHPYNKDGYGYILAEPDPHA-DTKDFEMDSFAGKPIPGEIYRHCLQPEVCLSLHDRAPQLKVSDDRLSVTGEKGYSSIRANYSVTKGEWYFEIKATSMPEGSALRLGWCQPYGNLQAPLGYDKFSYSWRSIKGTKFHQSKGKHYSNGYKEGDVLGFHISLVEPEAYDSNYLPKTYKDKALIKFKSHLHYEEKDVSEQMDKVIQPKKGCKITFFKNGRSQGTAFEDIYGGPYFPAASIYKNATVTFNFGPKFRFKPRGISYKPMSDRVEEMAVEQSLSDVLFLSNFEFD 1240
            A   S K    KR+  D     +   K+A++D   +   LPPHGYPLEHP+NKDGY YILAEPDPHA D +  E+D +AGKPIPG++YR CL   V L+LHDRAPQLK+SDDRL+V GEKGYS +RA++ V KG WYFEI    MP  +A RLGW QP GNLQAPLGYDKFSYSWRS KGTKFHQS GKHYS+GY +GDVLGF+I+L E +   +  LP TYKDKALIKFKS+L++EEKD  ++ +K ++     +I F+KNG +QG A++DI+ G YFPA S+YK+ TV+ NFGP F++ P+ ++Y+PMSD      VE +L+DVL+    E D
Sbjct:  288 AAGSSGKGRGAKRKQQDG--GTTGTTKKARSDPLFSAQRLPPHGYPLEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPE-DTETAKSLPDTYKDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTVSINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYHVETEVD 619
The following BLAST results are available for this feature:
BLAST of TCONS_00023174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASH2L3.843e-12857.31Set1/Ash2 histone methyltransferase complex subuni... [more]
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