TCONS_00023142 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023142
Unique NameTCONS_00023142
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023142 ID=TCONS_00023142|Name=TCONS_00023142|organism=Clytia hemisphaerica|type=transcript|length=286bp
ATTATGCCTCACCCTAGCTGGATCCCCTGCACTAGTTTCAACATGGCTCA
ACTATCCCGTTTTTTATTTAGactttctcaacttcagttgagctatttAG
AATTAAAGTGTGTCTGTCAGTGTGTGGGTGTACGTGGGTGCATGTGCAGA
TGTCGGTCGTCATCTGGATGCATGCTCAGGACCTAGGGGTTGGCTGATTT
TGCTAAAGCTTGTACATTTAAGCTCCTTGGGTGAGTCCTTGGGGCATTCT
CCTTCATTCTTCTTGGGAGTTGGCTGATTTTGCTAA
Run BLAST on NCBI

transcript from alignment at sc0000444:10593..11278+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023142 ID=TCONS_00023142|Name=TCONS_00023142|organism=Clytia hemisphaerica|type=transcript|length=686bp|location=Sequence derived from alignment at sc0000444:10593..11278+ (Clytia hemisphaerica)
ATTATGCCTCACCCTAGCTGGATCCCCTGCACTAGTTTCAACATGGCTCA
ACTATCCCGTTTTTTATTTAGactttctcaacttcagttgagctatttAG
AATTAAAGTGTGTCTGTCAGTGTGTGGGTGTACGTGGGTGCATGTGCAGA
TGTCGGTCGTCATCTGGATGCATGCTCAGGACCTAGGGGTTGGCTGATTT
TGCTAAAGCTTGTACATTTAAGCTCCTTGGGTAGTCCTTGGGGcattctt
cttcattcttcttggGAGTTGGCTGATTTTCTAAAGTCTTGTACATGTAG
TTCCTTGAGTGAGTCCTTGGGgcattcttcttcatttttttttggggggt
gGCTGATTTTGCTAAAGTTTGTACATTTAAGCTCCTTGGGTGAGTCCTTG
GGgcattcttcttcatttttttttggggggcgGCTGATTTTGCTAAAGTT
TGTACATTTAAGCTCCTTGGGTGAGTCCTTGGGGCATTCTCCTTCATTCT
TCTTGGGAGTTGGCTGATTTTGCTAAAGTCCTGTACATGTAGTTCCTTGA
GTGAGTCCTTGGGgcattcttcttcatttttttttgggggTGGCTGATTT
TGCTAAAGTTTGTACATTTAAGCTCCTTGGGTGAGTCCTTGGGGCATTCT
CCTTCATTCTTCTTGGGAGTTGGCTGATTTTGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013011XLOC_013011Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023142-exon-sc0000444-1491911889:10593..10807TCONS_00023142-exon-sc0000444-1491911889:10593..10807Clytia hemisphaericaexon
TCONS_00023142-exon-sc0000444-1510915933:10593..10807TCONS_00023142-exon-sc0000444-1510915933:10593..10807Clytia hemisphaericaexon
TCONS_00023142-exon-sc0000444-1575043694:10593..10807TCONS_00023142-exon-sc0000444-1575043694:10593..10807Clytia hemisphaericaexon
TCONS_00023142-exon-sc0000444-1491911889:11208..11278TCONS_00023142-exon-sc0000444-1491911889:11208..11278Clytia hemisphaericaexon
TCONS_00023142-exon-sc0000444-1510915933:11208..11278TCONS_00023142-exon-sc0000444-1510915933:11208..11278Clytia hemisphaericaexon
TCONS_00023142-exon-sc0000444-1575043694:11208..11278TCONS_00023142-exon-sc0000444-1575043694:11208..11278Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000444supercontigsc0000444:10593..11278 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0832734	0.155251	2.77056	17.2661	14.7022	4.7369	16.5011	1.82561	6.04253	0	0	5.07858	0	0.936136	0	0	0	0	0	0	0	1.86986	0	1.28057	5.73181	0.308117	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023142 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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