TCONS_00023133 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023133
Unique NameTCONS_00023133
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length451

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023133 ID=TCONS_00023133|Name=TCONS_00023133|organism=Clytia hemisphaerica|type=transcript|length=451bp
NNATTGCATCCATATCATTGAGACGTGGAGTTAcacatttttgagaattt
tttgattgactttACAGTAGAAAATTGATTTCGAGCAGGTCGATCAAATT
TGATAACAACCTTGTCATTGTTTCCCTCACTCACATCCATTTGGGGTGAC
CCGGGTGAAGGCTCATTCACTTTCCAAGTGAACCGTTGCCAGCAGGAATC
GAAACCTTTGAAGCCTGTGCACAGCGATCTGttatcggattcaaaatttt
cataaaagtttTGGTtagtaataaaaataatttgttttatcCTTGTTGTA
CTAATAATAAGTTTCTCCAGTGCAAATTTCGTGCCTGTAGCATAAACCCA
GTAGGAATTATAGTGATTCCGATTTGAGGGATCTAGGAGGGGATTTCTAG
GGATAGAGGGATcccgagaaaacgaaagtactctggTTAAGAAGAACTAA
G
Run BLAST on NCBI

transcript from alignment at sc0000443:134122..134572

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023133 ID=TCONS_00023133|Name=TCONS_00023133|organism=Clytia hemisphaerica|type=transcript|length=451bp|location=Sequence derived from alignment at sc0000443:134122..134572 (Clytia hemisphaerica)
CTTAGTTCTTCTTAAccagagtactttcgttttctcgggATCCCTCTATC
CCTAGAAATCCCCTCCTAGATCCCTCAAATCGGAATCACTATAATTCCTA
CTGGGTTTATGCTACAGGCACGAAATTTGCACTGGAGAAACTTATTATTA
GTACAACAAGgataaaacaaattatttttattactaACCAaaacttttat
gaaaattttgaatccgataaCAGATCGCTGTGCACAGGCTTCAAAGGTTT
CGATTCCTGCTGGCAACGGTTCACTTGGAAAGTGAATGAGCCTTCACCCG
GGTCACCCCAAATGGATGTGAGTGAGGGAAACAATGACAAGGTTGTTATC
AAATTTGATCGACCTGCTCGAAATCAATTTTCTACTGTaaagtcaatcaa
aaaattctcaaaaatgtgTAACTCCACGTCTCAATGATATGGATGCAATN
N
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013003XLOC_013003Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023133-exon-sc0000443-1491911889:134122..134572TCONS_00023133-exon-sc0000443-1491911889:134122..134572Clytia hemisphaericaexon
TCONS_00023133-exon-sc0000443-1510915933:134122..134572TCONS_00023133-exon-sc0000443-1510915933:134122..134572Clytia hemisphaericaexon
TCONS_00023133-exon-sc0000443-1575043694:134122..134572TCONS_00023133-exon-sc0000443-1575043694:134122..134572Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000443supercontigsc0000443:134122..134572 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.293204	0.428881	0.497972	0.487188	1.77931	2.18717	1.13088	0.705812	0.247078	0.918137	2.37644	1.98126	1.56001	0.506276	0.499474	0.0893353	0	0.226881	0.311683	0	0.145506	0.207412	0.168091	0.305639	2.51841	1.82619	0.201021	0	0.164775	0.335052
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023133 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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