TCONS_00023127 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023127
Unique NameTCONS_00023127
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1319

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023127 ID=TCONS_00023127|Name=TCONS_00023127|organism=Clytia hemisphaerica|type=transcript|length=1319bp
AAGTGGTAAGTTTTATATGCATTGTATATCAACACCCGTCCTTAACAAAG
ATAAGAAATTAAACCCAAGAAGTGGAATCTCAACCAAACATAGTCTTCGT
ATGGCAACGCCCGCTTTCAGCCCTGCACCTTCAACTTTTGCATCATCTAA
GAAGGAGAGATTACCAACTTCAAAACAAATGCCCTCCACCGCAGAACTGT
ACCGTTTCATGTCATTGAATTACGATGGATCTGTGTCAAGGAATCTTGAT
CGAAATTTGAACGGTTCATTCGTCCAAGCAGATACCTCACCTGATGGGTC
ACCCTCTCCCAAAAAGTTACACGAGCACGCGGAAAATATTCGTCGCGCGG
TCGAAGAGCATCACAATAAAAGTATTGAAGAGGGTGTCACTGAACTACAA
AAAACTCCTAGATCGCACACAAGTTCCAACACTGGATTTAGTGGTAGCGA
AATTCCGTTCTATTTAATGGAGTAGGTACTGATGATCACGTATGGTTTAT
AGTTCAATAAATCTCAATGGGTTGTTGCTAAGCAACGGGAGAGCACTTTC
ATTTGTCATATTTGATATGACTGAATGCAGAATCAAACATTGGATTGAAA
AGGGAATGGTTTCAATCAGTACATCGGGATTTCTGTCATTAGCTTCACTG
GGAAGAAATCAATTCTCTcatattaacttatttattcatTCGAGGAGGAT
ACCAGAAAGTCTTCTTCCAGAAGCTTCGGTTATACAACAATGCGCCTAAG
GATGCATGAAAGAGGAGTGGAACCGAGTTTATAAGGGGcgaatgacgtca
atttttagaATTCAATATAATGAAGAACTTGCAGGCAATAAAGACATTTC
ATGCCATTCGACTCTGGTCAAGTAGATGCCAGTCCTCTGGTTGTGATAGG
GTTGGTGTCATACGCATCGAATTgccaaattcatgatatgcaccactgca
atgacttcacgaaattatgcaaccttctgtttttgttccacccaatacgt
cactttttctattggtTAAGTGACGTATTaggattttcaaagttttcaga
agactctccagtggtgcatatcatgaattgggtgcgaaattttcaaagtt
cccagaagactctccagtggtgcatatcatgaatagtacTACTGAGTAGA
TTATATtgaatattgagattttagaaACATTTCCATTCAGTTTGTTCGCC
TTGTAtttgtagtaatatttttttaaactgtatttaggataaaaataaaa
atattttttctcgaaatttattcttccaaattaatttgaaatataCCATA
AATCCTTGCATATCTTCAG
Run BLAST on NCBI

transcript from alignment at sc0000443:261365..266084-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023127 ID=TCONS_00023127|Name=TCONS_00023127|organism=Clytia hemisphaerica|type=transcript|length=4720bp|location=Sequence derived from alignment at sc0000443:261365..266084- (Clytia hemisphaerica)
AAGTGGTAAGTTTTATATGCATTGTATATCAACACCCGTCCTTAACAAAG
ATAAGAAATTAAACCCAAGAAGTGGTAAGTTTTATATGCATTGTATACCC
ACGCCCGTCCTTAACAAAGATAAGAAATTAAACCCAAGAAGTGGTAAGTT
TTAACCATTATTGTTGGTGTATTGTGTTGTACATGACTGTAATCTTAAGG
GGGCGTACGGCGTTTGCTATTTCCGAAATACCGAATAATTTTGCTAAAAT
TTCCGAAATTCCGTAAAAAAAATACTTGCAATTCCGATACCGACTTTTCT
GGGTATATTTCCTAATTTTAACTAATTTTTCATCAAATTTGTTTTTTCAT
GTATAAATTCCGAAAAAGGAGGATAAAAACTTTATATACCGAAATTCCGA
AGCAAAAAATCATGGATTTCCGATACCGAAGCAATTTCAGCATTCCGAAA
TACTGAAGGAATTTTGCCCGATTTCCGAAATTCCGAAGAAAAAAGGGTCG
ATTTCCGCAATTCCGAAATACCGTACGCCGTAACCTTAAGGTTTTGCTCA
AATCTCCAACTTGTCGCAAAAATCGACGTCCCTTGATAGAAGATGACTTC
CATTATCCATCCCAAGACTTAGACCATGTTTAGAAGTTACTATTTAGTAT
CGCTTTAGTTGGTTTTTGAACTGTTTATTGGTTTAGAAACGTTTCGGAGC
AACAAAAGGGAGCAGTAATTATTCTTTCGTAACGTAGTGGTATAGTGGTT
ATCGTGCTTGACTTCTGTCCAGAAGGCCCGAGTTCGATACCCATCGTGGC
ACTACGATTCACTTGGCAAGTGAATGCTCCTTCGTCCGGGTCAACATATG
CCATGTGAGGGGAATTGGGTACCATTACTCCGATCAAAGAGTATGGGTAG
ATATTACGGACATTGTGATGTGCTGAGACACTTAAGAGGTTCTACATCTG
CGAGGACATCCTAAATACATCGTGGGTAGGACCCATTCCGATGCATCGGA
GGGCATATCTATTTATCTATCTATCTATCAATTATTCTTTCTTGACTCCG
AAACATACTTATTTAACTGATTTGCGCTCAAGTCGCCCAACAGAAGTGAA
ACCTGTCTGTGTACTTGGAGTAAAAATTGATTTTCATTTTTTTCTTCTTG
GTATGAAAGTTCTTTCACCCAGTTCAGTCAATTTTTACTTTCAAAAAAGC
TCTGAAACGGCATATTTTCAATTAGAAATTTATTGTTACCAGTTGTCTTT
CTTGTTTTTAACTTTATTTTAATTTAATTCATATTCATTTATTACAGTGG
CCCCTGGCGGAGACGCTAATTTTTTTTCCGTGAACGGACGGAAGTATCTT
CGACGGTCAGAAGTATCTTCGACGGTCAGAAGTATCATCTTTTGACGGTC
GGAAGTACCATTTTTAATTTTTCCTATCCGTCATTCCGTGGTTCAGGGGG
TATTGGGTCATTACCAATCAATTAGGTAGGGTCAGGGTTGCTAGTAACGG
CTTGTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTGCTAGTAACGGCTCGAATT
TCAGTCAGTTTAAAAAAGGGGTACTTTTACCCATATTATAATAACATTAC
CCCCGTCTTTTGCCAGTTCGGCATAATATGTTATGAATTGCGTTAATTTG
CTGTGCGGTGATGGCTCAACGGATAGAGCGCTGGCTTCCAAATCTGAAGG
TCTCTCTTTGGTGGTGGTTCGAATCCCACTCGGTGCGAAAATTAGACAGG
TCAAAATTGATGGACAAATGATTGACAAGTATGAAAACTCAGTCAGAAAT
GAGAATCTAAGTCTCAGAAAGTAGAAAAAAACAGATAAGGTGAAAGATAG
GTAAGGGAAAATGGGCCGTCAAAAGATGATACTTCTGACCGTCGAAGATA
CTTCCGTCCGTTCACGGAAAAAAAATTTGCGGCGGAGACAATGGCTGAGC
TGCCTAAAAAAATGCCACTCAAAATATTATTTATTGTTATTGTTATTATT
GTTATACAGATTTACAAGCTAGGCTCACGATGGGCCTCTAACCGGTCTTC
TTTCACATTCCTCTTGTAACAAATTTTTGTGGATGGTTTTTCCATGCATC
ATTCAGTTTCTCTTTAAACGACTTAATCAATTGTGCGGATACAACTTCTC
TTGGTAGTTTATTCCACGTTGGCACACATCTATAGTAAAACGACTTAGTT
TGGGGTCCATTGAAGCCGTCATTAGCAAAGTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTGAAGCCGTCATTAGCAAAGTTTGGTAAAAG
CTCTTTGGAATGTCTTCGTTTAGGACGTGCACGGCTGATTAGTTTTGAAG
GTATAGTATCTTTGTCGTATCATTGTTGTTATAGGAATCTCAACCAAACA
TAGTCTTCGTATGGCAACGCCCGCTTTCAGCCCTGCACCTTCAACTTTTG
CATCATCTAAGAAGGAGAGATTACCAACTTCAAAACAAATGCCCTCCACC
GCAGAACTGTACCGTTTCATGTCATTGAATTACGATGGATCTGTGTCAAG
GAATCTTGATCGGTAATTACCTTATCAGCCAAAACTTAGTCGGCCCTTAC
TGACTAAATTTTGGCTTGGTGACTAAAATTAGGGCCGACTAAAAATTTTG
GCCAAATTAAAAGTTTATGATTAAGCTTTCCTTAACCAACTTTTTTGAGT
ACCACATCACGGTCATTTATTATTTCGTCCGCTATTATTCATTATATATT
AGTCGGCCCTTAGTGACTAAATTTCGACGAGGTGAATAAAATTAGGCCCG
ACTAAAAATTAGGGCCGACTAAAAATTAGGGTCGACTAAAAATTAGGGTC
GACTAAGTTTTGGCCGGTAAGATACACGCTTTTTTATGATAAACACGAGG
CTTAAAATTGGCCAAAACCTAAGAACAAATTAAGAACAATCTAAGCCTCG
GATTTCAGAAAGTACCGATTTTAACAGATTTTAAAACTTGTTTTTGAATA
AAGAAACTGAACGTATTAAGAACATCGTAAGAACATTATGACATACTGTA
TTGCATTTACTGAATTACAAATTTTGAATATTTAGATCTGGCAAGCTTTT
TACTTTCTTACCTTACAATGAAATAACGAAAAATGTTATATTGATACACT
GCGCTGAAAAAAAGTGGTCACGTCTAGTAAAGGCTAGCTTTTTGTTTGAG
ATATTGATGTCGAAGCCAGGGCCCACGCCATGAAATTGAAAGTGGAGGCC
AATAAATAACGAGTCTAAGTAGGCGCAACCAAAAAATTTTACTTCTCAAA
AAAGTGGGCCCTGAAAGCTCAATTGTCTTTTCTCCTTTTTTCTAGAAATT
TGAACGGTTCATTCGTCCAAGCAGATACCTCACCTGATGGGTCACCCTCT
CCCAAAAAGTTACACGAGCACGCGGAAAATATTCGTCGCGCGGTCGAAGA
GCATCACAATAAAAGTATTGAAGAGGGTGTCACTGAACTACAAAAAACTC
CTAGATCGCACACAAGTTCCAACACTGGATTTAGTGGTAGCGAAATTCCG
TTCTATTTAATGGAGTAGGTACTGATGATCACGTATGGTTTATAGTTCAA
TAAATCTCAATGGGTTGTTGCTAAGCAACGGGAGAGCACTTTCATTTGTC
ATATTTGATATGACTGAATGCAGAATCAAACATTGGATTGAAAAGGGAAT
GGTTTCAATCAGTACATCGGGATTTCTGTCATTAGCTTCACTGGGAAGAA
ATCAATTCTCTCATATTAACTTATTTATTCATTCGAGGAGGATACCAGAA
AGTCTTCTTCCAGAAGCTTCGGTTATACAACAATGCGCCTAAGGATGCAT
GAAAGAGGAGTGGAACCGAGTTTATAAGGGGCGAATGACGTCAATTTTTA
GAATTCAATATAATGAAGAACTTGCAGGCAGCATGAACATATAAACCAAA
GGATGCATAAAAGAGGATTGGGTCCGAGTTTATAAGGGTCGAATGACGTC
AATTTTTAGAATTCAATGTAATGAAGAACTTGCAGGCAATAAAGACATTT
CATGCCATTCGACTCTGGTCAAGTAGATGCCAGTCCTCTGGTTGTGATAG
GGTTGGTGTCATACGCATCGAATTGCCAAATTCATGATATGCACCACTGC
AATGACTTCACGAAATTATGCAACCTTCTGTTTTTGTTCCACCCAATACG
TCACTTTTTCTATTGGTTAAGTGACGTATTAGGATTTTCAAAGTTTTCAG
AAGACTCTCCAGTGGTGCATATCATGAATTGGGTGCGAAATTTTCAAAGT
TCCCAGAAGACTCTCCAGTGGTGCATATCATGAATAGTACTACTGAGTAG
ATTATATTGAATATTGAGATTTTAGAAACATTTCCATTCAGTTTGTTCGC
CTTGTATTTGTAGTAATATTTTTTTAAACTGTATTTAGGATAAAAATAAA
AATATTTTTTCTCGAAATTTATTCTTCCAAATTAATTTGAAATATACCAT
AAATCCTTGCATATCTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012997XLOC_012997Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023127-exon-sc0000443-1575043694:266011..266084TCONS_00023127-exon-sc0000443-1575043694:266011..266084Clytia hemisphaericaexon
TCONS_00023127-exon-sc0000443-1575043694:263323..263500TCONS_00023127-exon-sc0000443-1575043694:263323..263500Clytia hemisphaericaexon
TCONS_00023127-exon-sc0000443-1575043694:261958..262539TCONS_00023127-exon-sc0000443-1575043694:261958..262539Clytia hemisphaericaexon
TCONS_00023127-exon-sc0000443-1575043694:261365..261849TCONS_00023127-exon-sc0000443-1575043694:261365..261849Clytia hemisphaericaexon
TCONS_00023127-exon-sc0000443-1510915933:266011..266084TCONS_00023127-exon-sc0000443-1510915933:266011..266084Clytia hemisphaericaexon
TCONS_00023127-exon-sc0000443-1510915933:263323..263500TCONS_00023127-exon-sc0000443-1510915933:263323..263500Clytia hemisphaericaexon
TCONS_00023127-exon-sc0000443-1510915933:261958..262539TCONS_00023127-exon-sc0000443-1510915933:261958..262539Clytia hemisphaericaexon
TCONS_00023127-exon-sc0000443-1510915933:261365..261849TCONS_00023127-exon-sc0000443-1510915933:261365..261849Clytia hemisphaericaexon
TCONS_00023127-exon-sc0000443-1491911889:266011..266084TCONS_00023127-exon-sc0000443-1491911889:266011..266084Clytia hemisphaericaexon
TCONS_00023127-exon-sc0000443-1491911889:263323..263500TCONS_00023127-exon-sc0000443-1491911889:263323..263500Clytia hemisphaericaexon
TCONS_00023127-exon-sc0000443-1491911889:261958..262539TCONS_00023127-exon-sc0000443-1491911889:261958..262539Clytia hemisphaericaexon
TCONS_00023127-exon-sc0000443-1491911889:261365..261849TCONS_00023127-exon-sc0000443-1491911889:261365..261849Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000443supercontigsc0000443:261365..266084 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.64802	6.50594	13.4018	20.9367	0	0	1.34624e-05	0	2.79254	1.5924	1.47991	0.965256	1.15808	1.83566	0.024835	2.85189	5.12908	0.000666268	0.0337145	4.57187e-05	8.49453	3.36572	6.64892	1.97327	0	0	7.65354	0	4.3702	4.74571
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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