TCONS_00023105 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023105
Unique NameTCONS_00023105
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023105 ID=TCONS_00023105|Name=TCONS_00023105|organism=Clytia hemisphaerica|type=transcript|length=404bp
TTGAGCTATTTTATATATAGTTAAGTATTATATAGTTTTATATTCAGCAC
ACACTACACTAAATTCCCAAGTGCAGCAATACCATTCATTGATGCAATGA
TTTGTGGATGATTTGCAAACGATGATATTCATCCATCCTCCCCTCTCCAA
TCTGGAAAGTAAGGCATGTACGCCAGATATCTCCGGCGCAGACTTTGGAT
TTCATAGACTTACACAAAGGCTCGGCCAAGAAATCTCTGGCGTAAATATT
CTCTTCTTTCCAGACTGGTCCCCTCTCCAGGGATGcaagtcaaatttttc
aatctgcggaaTAAGACAGGGGTTcagttattatcagttaggctTAGGCT
AGGGTTAGGTAGGGTCAGAGCTTAGCttagactttttttaatttttagga
cCGT
Run BLAST on NCBI

transcript from alignment at sc0000441:45330..45733

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023105 ID=TCONS_00023105|Name=TCONS_00023105|organism=Clytia hemisphaerica|type=transcript|length=404bp|location=Sequence derived from alignment at sc0000441:45330..45733 (Clytia hemisphaerica)
ACGgtcctaaaaattaaaaaaagtctaaGCTAAGCTCTGACCCTACCTAA
CCCTAGCCTAagcctaactgataataactgAACCCCTGTCTTAttccgca
gattgaaaaatttgacttgCATCCCTGGAGAGGGGACCAGTCTGGAAAGA
AGAGAATATTTACGCCAGAGATTTCTTGGCCGAGCCTTTGTGTAAGTCTA
TGAAATCCAAAGTCTGCGCCGGAGATATCTGGCGTACATGCCTTACTTTC
CAGATTGGAGAGGGGAGGATGGATGAATATCATCGTTTGCAAATCATCCA
CAAATCATTGCATCAATGAATGGTATTGCTGCACTTGGGAATTTAGTGTA
GTGTGTGCTGAATATAAAACTATATAATACTTAACTATATATAAAATAGC
TCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012981XLOC_012981Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023105-exon-sc0000441-1491911889:45330..45733TCONS_00023105-exon-sc0000441-1491911889:45330..45733Clytia hemisphaericaexon
TCONS_00023105-exon-sc0000441-1510915933:45330..45733TCONS_00023105-exon-sc0000441-1510915933:45330..45733Clytia hemisphaericaexon
TCONS_00023105-exon-sc0000441-1575043694:45330..45733TCONS_00023105-exon-sc0000441-1575043694:45330..45733Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000441supercontigsc0000441:45330..45733 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.545811	0.712125	0.632276	0.201537	0.245784	0.601832	0.701727	0.875931	0	0.5708	0.184327	0.379294	0.614473	0.503589	0.633627	1.01499	0.13658	0.839938	0.386806	0.607148	0.527721	0.514808	0	0	0.783525	1.74334	0.997888	0.548673	1.42976	1.0287
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023105 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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