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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023097 ID=TCONS_00023097|Name=TCONS_00023097|organism=Clytia hemisphaerica|type=transcript|length=1268bpRun BLAST on NCBI protein sequence of TCONS_00023097-protein >TCONS_00023097-protein ID=TCONS_00023097-protein|Name=TCONS_00023097-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp MGILEKIAEIEREISRTQKNKATEYHLGLLKAKLAKYRSELLEPSKSSGARun BLAST on NCBI transcript from alignment at sc0000441:176358..189110- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023097 ID=TCONS_00023097|Name=TCONS_00023097|organism=Clytia hemisphaerica|type=transcript|length=12753bp|location=Sequence derived from alignment at sc0000441:176358..189110- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000441:176358..189110- >TCONS_00023097 ID=TCONS_00023097|Name=TCONS_00023097|organism=Clytia hemisphaerica|type=CDS|length=15330bp|location=Sequence derived from alignment at sc0000441:176358..189110- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023097 vs. Swiss-Prot (Human)
Match: DRG2 (Developmentally-regulated GTP-binding protein 2 OS=Homo sapiens GN=DRG2 PE=1 SV=1) HSP 1 Score: 621.698 bits (1602), Expect = 0.000e+0 Identity = 291/364 (79.95%), Postives = 334/364 (91.76%), Query Frame = 1
Query: 100 MGILEKIAEIEREISRTQKNKATEYHLGLLKAKLAKYRSELLEPSKSSGAKGEGFDVMKSGDARVALIGFPSVGKSTLLNTMTDTKSEAGAYEFTTLTCIPGVIPYNGANIQLLDLPGIIEGASGGKGRGRQVIAVARTADLVIMMLDAAKGEIQKTLLERELETCGIRLNCRKPNIYFKLKKGGGVAFNSTLTLTKMNEKMVQLILHEYKIFNAEVLFREDCTADQFIDVIQANRVYLPCLYVYNKIDCISLEEVDRLARSDDTIVISCQDRLNLDFLLEMIWEYLALRRIYTKKRGEPPDFTEAIIMRKGASVEHVCHRVHRTLVEQFKYALVWGTSTKYSPQRVGISHVLDDEDVIQIMKK 1191
MGILEKI+EIE+EI+RTQKNKATEYHLGLLKAKLAKYR++LLEPSKS+ +KGEGFDVMKSGDARVALIGFPSVGKST L+ MT T SEA +YEFTTLTCIPGVI Y GANIQLLDLPGIIEGA+ GKGRGRQVIAVARTAD++IMMLDA KGE+Q++LLE+ELE+ GIRLN KPNIYFK KKGGG++FNST+TLT+ +EK+VQLILHEYKIFNAEVLFREDC+ D+FIDVI NRVY+PCLYVYNKID IS+EEVDRLAR +++VISC +LNLD+LLEM+WEYLAL IYTKKRG+ PDFT+AII+RKGASVEHVCHR+HR+L QFKYALVWGTSTKYSPQRVG++H ++ EDVIQI+KK
Sbjct: 1 MGILEKISEIEKEIARTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSASSKGEGFDVMKSGDARVALIGFPSVGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADVIIMMLDATKGEVQRSLLEKELESVGIRLNKHKPNIYFKPKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVGNRVYMPCLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYTKKRGQRPDFTDAIILRKGASVEHVCHRIHRSLASQFKYALVWGTSTKYSPQRVGLTHTMEHEDVIQIVKK 364 The following BLAST results are available for this feature:
BLAST of TCONS_00023097 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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