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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023094 ID=TCONS_00023094|Name=TCONS_00023094|organism=Clytia hemisphaerica|type=transcript|length=5644bpRun BLAST on NCBI transcript from alignment at sc0000441:120884..147326- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023094 ID=TCONS_00023094|Name=TCONS_00023094|organism=Clytia hemisphaerica|type=transcript|length=26443bp|location=Sequence derived from alignment at sc0000441:120884..147326- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00023094 vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4) HSP 1 Score: 210.69 bits (535), Expect = 2.505e-54 Identity = 145/454 (31.94%), Postives = 220/454 (48.46%), Query Frame = 2
Query: 1541 LTVLVQYGKPPTKDEYDAKFILTEDFPETNGESTIMNITAKYHKMLDARTLLMWNL--EELPYGDSNQTKMFMAFSFEGPIPDNQLHSNPYTKDIRELPQTYNYTLNAFCAECSYWDAKNESWSTEGCTVSGNETTINKTVCKCNHLTSFGGMFV----APNPLPTPSL-ALLKEGYVLLVTIASMLFIYVIGLVFARRIDKADLDKVGCYPLVGNQKSDKYLYQITVNTGTRREAGTTSNIYFNLSGTQGESGVRLLKDEENRAFIRGSSLTFVMSTEKNLGDLVYLRIWIDNTGG--DWYLRNMEVIDLQSQEDTTFIVGKWFSVEKEEGFLVHNIAAASDSQMKEFNYLFANHARRQFADTHIWFSVYARPPESSFTRCQRLSVAMSLLFSVMLANIMFYGAVPAGTPETENNIRGFTFTWPQVMVGVQSALITVPVNILLVFLFNAIRMK 2875
LT+ + YG P K YDA+ L M+ L W L ++L +G+ + +P++ L P +D+ + F + C +WD E+W GC V G T+ +T C CNHLT FG F+ A N T L A ++ V++ T+ + +YV+ +++ARR D D KV L N +Y Y +TV TG RR A T+S + L G GE L D + F RG+ F++ST LG+L LR+W DN+G WY+ + V DL F+ W S+ + L A++ K+F++LF F D HIW+S+++R SSFTR QR+S SLL ML +IMF+G VP E + ++ FTW +VM+G++S+++ P+N+L+V +F R +
Sbjct: 1206 LTLSLGYGYHPNKSSYDAQTHLV--------------------PMVAPDELPTWILSPQDLRFGE--------GVYYLTVVPESDLEPAP-GRDL-------TVGITTFLSHCVFWDEVQETWDDSGCQV-GPRTSPYQTHCLCNHLTFFGSTFLVMSNAINIHQTAELFATFEDNPVVVTTVGCLCVVYVLVVIWARRKDAQDQAKVKVTVLEDNDPFAQYHYLVTVYTGHRRGAATSSKVTVTLYGLDGEREPHHLADPDTPVFERGAVDAFLLSTLFPLGELRSLRLWHDNSGDRPSWYVSRVLVYDLVMDRKWYFLCNSWLSINVGDCVLDKVFPVATEQDRKQFSHLFFMKTSAGFQDGHIWYSIFSRCARSSFTRVQRVSCCFSLLLCTMLTSIMFWG-VPKDPAEQKMDLGKIEFTWQEVMIGLESSILMFPINLLIVQIFQNTRPR 1621 HSP 2 Score: 169.474 bits (428), Expect = 8.587e-42 Identity = 128/491 (26.07%), Postives = 232/491 (47.25%), Query Frame = 1
Query: 3334 QFWDYVNKTVINGLYPHKWYDIDDKWKDQEYVHQFPGGLFLDDGVTKILTGARLRQLRVPPSSCIKAKEIKKDIRQDCLGYYDLLDEQETAYDQNWTIYDTNYRQGKRLTARTMP-WTFQEDGDLDGFPASGEISTYGGGGYVAEIFP-KWNNEAIIQNLKDKLWIDRHTRAVYIEFGAYNAGTNYFNSIVILFEFPPYGGVIQYHYFITFRVLPGTNDWSFMILMAEICFLIFTVLFLIREGREMYRDGILKYATQFWNMIEMLIIVFCFLTIGLTFYKETLRKSIVNRLPDKVPNIYINLQYASYVDLTLLYSFALICFFILLKFVKL---LRFNKRISMLARTLKRAGQDLLIFGFQFAIVLVAFTFSGTLAFGKDLYGYKDNWSTFASVIRLILGKFDFSEFAQADEVLGPMWFNLFHIGVNFIVMNMYISILNDALSAE--YAELGDRENDFEVVEYMVSSFKEYLGMASITREKDVFVDDRDGDI 4785
+F+ + N T+++ LY H PG F+ DG +K++ A++RQ+RV SSC A++ + + C Y L E Y + W A T+ W +Q G+P G+++ Y GGGYV + + + I++ L D W+D TRAV++E YNA N F + + E G + + R+ P T+ W ++ AE+ + +F + +++ +G+ M ++ Y WN++E+ II+ + + + + L + + R + I+ + D L Y +I F +LL VKL LR N +++M+ L+RA D+ F +L+A++ + L FG L YK + +++ L LG F++ E VLG + + F+V+N++IS++ A S E Y +L + + E+V+ ++ +LG+ S RE+ ++ G +
Sbjct: 1996 EFFKWANTTLVSNLYGHP-----------------PG--FITDGNSKLVGSAQIRQVRVQESSCPLAQQPQAYL-NGCRAPYSLDAEDMADYGEGWN-------------ATTLSEWQYQSQDQRQGYPIWGKLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTVYNANVNLFCIVTLTLETSALGTFFTHAALQSLRLYPFTDGWHPFVVAAELIYFLFLLYYMVVQGKRMSKE-TWGYFCSKWNLLELAIILASWSALAVFVKRAVLAERDLQRCRNHREE-GISFSETAAADAALGY---IIAFLVLLSTVKLWHLLRLNPKMNMITAALRRAWGDISGFMIVILTMLLAYSIASNLIFGWKLRSYKTLFDAAETMVSLQLGIFNYEEVLDYSPVLGSFLIGSCIVFMTFVVLNLFISVILVAFSEEQKYYQLSE---EGEIVDLLLMKILSFLGIKS-KREEPGSSREQPGSL 2444 The following BLAST results are available for this feature:
BLAST of TCONS_00023094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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