TCONS_00023091 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023091
Unique NameTCONS_00023091
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1084

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023091 ID=TCONS_00023091|Name=TCONS_00023091|organism=Clytia hemisphaerica|type=transcript|length=1084bp
TTTGACATCATGAAGGacgaaaaatcacaaaaagatTCCAAAATCTTTAC
TGAAGTTCAAGATGCTATGAAAAAACAAATACCGTTATTGCAGTCACAAG
ACTGGGTAACAGAAGACCTTCTAACAAAAATCATGCAACATCCGAAACTA
TCCAAACAATTTATGGACCCCCGTTTCAGTTCAGCTAtcgagaaatttca
aaagaatccACGCGAAGTAATGGAGATGTGTCAAACTAACGAAGAGCTCA
GAGAATTCATACAACAATTTTGTTCTCTTATGGGTGATCATTTCACTGGA
TTGGCTGATCAAACAGATAAGGTactgtttactttctaatacaGGGTCCA
cgtcattgagtttcaagcccgaagggcttaAGTTGAGACTTCTGGATgag
aaatgaaaccacttaccCATTTTCATTTCCCATTCAGaacgcgcgtagtt
tttacacaaacgctggattgaaacTGTAGtccttcaaaacaaagaaaccg
ctagatacaatccgtcgttatgattacggcgcgttcaaTGTGCGttttgg
atggaaaataagtggcttcaatttctcttgcctgagaagggttaaagttt
cgcctctagcctttcgggcttgaaactcaatggcccACGCCATGGTCTGG
AAAGTGGAGTGGCCGACATTAAAGGGACTAAGGAGGTGCAACCACGTTTG
GCGCTAATGAGAGAATGCTTTGATTTTGACCTCCTTTAAAAATGGCCTTA
TTTCAGACTGATTTTCACAAAATGATGatagtaatattttcaaaataatt
tttccaatagACAAAGTTAGCGGTGCCATGACTCCGACCCACCCGGTGGC
GTGGGTCCTGGAatataattatctccaagtatTTCTCGTGTTTCTAACGA
CTGCCACACGTTCATCTCGaaattaaaataatattaaTGGGCAGCCTTGA
TTTAAATATATCCTTGCTTAAACATCCTATATTAAATATCTTACAAGTGT
TTACACTTTTCTCAGTTTTTATAATCAAAGTTGACAACGATGTATTATGT
ATAAGTTAGGTGAATTATTTATGAAAACGAGGCC
Run BLAST on NCBI

transcript from alignment at sc0000441:106161..107979-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023091 ID=TCONS_00023091|Name=TCONS_00023091|organism=Clytia hemisphaerica|type=transcript|length=1819bp|location=Sequence derived from alignment at sc0000441:106161..107979- (Clytia hemisphaerica)
TTTGACATCATGAAGGACGAAAAATCACAAAAAGATTCCAAAATCTTTAC
TGAAGTTCAAGATGCTATGAAAAAACAAATACCGTTATTGCAGTCACAAG
GTAAAATGGGCTTTTCCAGAAATTTTTCGTAGCCCCTGTTGAGAATATCT
ATTTTTCAAGTTTCACAGTCCCTGGATGTCTAGCTTAAGATTATAGACCC
CCAGCCTAGATATCCGACCTGAAAAAGTGGATAGAAAGGGATGAGATATC
AATGCATTCTGTCCTGTACCCCCTGAATATCCTCTCTCCTTATATATATG
TCCTAACCCCCTGGATATCCAGATAGCATTGAAACTCCTGCCTGATATTC
TTAACAGGGATATTGTCTTAGAGACAATGCTCTTCATGATATCAAAGTAG
GCTACCGTCGTCTTTGCTAACCAGAATTAACAAAAAAGTAATTTTCTACA
ATCAGGCCATAATACAGTCGACTCCCGGTTATTCGAAGCTCCAAGGGGGA
TAAGAATTTACTTCGAATAACCGAAAGTTAGAATAACTGAAAAATTCGTT
TTCCCGTCAGATTTTTAACTAAATCTAAATGGGATGGACTTTTCTGATAA
TCAAATAATTGAATCTTTCTTATTGGATGAGGGGTTAAACACGTTTGCCG
CCGAGCCTTTTCAGAAATTGAAATTTGACCTCTTGGAAATTAAACGAGTT
TTGCTTTAAATACCTTCAGATTGTATACAAATTGACGCAGAATTTTACGT
AAAACCAAAAATACAATAACTATTAAGCAATGTAGGTAGGTTTTCAATCT
AATGGACCACTCTCTATGAACTTCCCATTCTTTAGACTGGGTAACAGAAG
ACCTTCTAACAAAAATCATGCAACATCCGAAACTATCCAAACAATTTATG
GACCCCCGTTTCAGTTCAGCTATCGAGAAATTTCAAAAGAATCCACGCGA
AGTAATGGAGATGTGTCAAACTAACGAAGAGCTCAGAGAATTCATACAAC
AATTTTGTTCTCTTATGGGTGATCATTTCACTGGATTGGCTGATCAAACA
GATAAGGTACTGTTTACTTTCTAATACAGGGTCCACGTCATTGAGTTTCA
AGCCCGAAGGGCTTAAGTTGAGACTTCTGGATGAGAAATGAAACCACTTA
CCCATTTTCATTTCCCATTCAGAACGCGCGTAGTTTTTACACAAACGCTG
GATTGAAACTGTAGTCCTTCAAAACAAAGAAACCGCTAGATACAATCCGT
CGTTATGATTACGGCGCGTTCAATGTGCGTTTTGGATGGAAAATAAGTGG
CTTCAATTTCTCTTGCCTGAGAAGGGTTAAAGTTTCGCCTCTAGCCTTTC
GGGCTTGAAACTCAATGGCCCACGCCATGGTCTGGAAAGTGGAGTGGCCG
ACATTAAAGGGACTAAGGAGGTGCAACCACGTTTGGCGCTAATGAGAGAA
TGCTTTGATTTTGACCTCCTTTAAAAATGGCCTTATTTCAGACTGATTTT
CACAAAATGATGATAGTAATATTTTCAAAATAATTTTTCCAATAGACAAA
GTTAGCGGTGCCATGACTCCGACCCACCCGGTGGCGTGGGTCCTGGAATA
TAATTATCTCCAAGTATTTCTCGTGTTTCTAACGACTGCCACACGTTCAT
CTCGAAATTAAAATAATATTAATGGGCAGCCTTGATTTAAATATATCCTT
GCTTAAACATCCTATATTAAATATCTTACAAGTGTTTACACTTTTCTCAG
TTTTTATAATCAAAGTTGACAACGATGTATTATGTATAAGTTAGGTGAAT
TATTTATGAAAACGAGGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012972XLOC_012972Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023091-exon-sc0000441-1575043694:107880..107979TCONS_00023091-exon-sc0000441-1575043694:107880..107979Clytia hemisphaericaexon
TCONS_00023091-exon-sc0000441-1575043694:106161..107144TCONS_00023091-exon-sc0000441-1575043694:106161..107144Clytia hemisphaericaexon
TCONS_00023091-exon-sc0000441-1510915933:107880..107979TCONS_00023091-exon-sc0000441-1510915933:107880..107979Clytia hemisphaericaexon
TCONS_00023091-exon-sc0000441-1510915933:106161..107144TCONS_00023091-exon-sc0000441-1510915933:106161..107144Clytia hemisphaericaexon
TCONS_00023091-exon-sc0000441-1491911889:107880..107979TCONS_00023091-exon-sc0000441-1491911889:107880..107979Clytia hemisphaericaexon
TCONS_00023091-exon-sc0000441-1491911889:106161..107144TCONS_00023091-exon-sc0000441-1491911889:106161..107144Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000441supercontigsc0000441:106161..107979 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.37112	3.94919	3.8981	3.03792	9.88982	7.05514	4.40934	4.20708	2.57086	3.21431	2.00458	2.12961	0.541508	0.815336	0.701702	0.625081	0.917863	1.55611	0.291256	0.806806	1.51451	1.12005	1.05822	1.08227	1.05742	0.902372	3.00588	2.647	0.949039	1.20038
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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