TCONS_00023075 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023075
Unique NameTCONS_00023075
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023075 ID=TCONS_00023075|Name=TCONS_00023075|organism=Clytia hemisphaerica|type=transcript|length=346bp
AATCCAAGAGGTCACATGACAATTTCGATCCAGAATTTACAGAAGAAGCA
ACTCGCCTGACGCCCATCGACCGTAATTTCATTCAACACGTCGATCAAAG
GGTCTTCGAAAACTTCTCTTACATCAATAATACTTTTGTTGGTCAGTAAA
ATACACGCCCTGAGAAAACAAATACCACTTACACAGTTCTAGTTACAAAC
AAACactgaaaatcattttttctatTGACGTTAGTAGAAACCACGCATAG
TGTAAGTGCTAGACCTGGTTTTCACTCACAGAAAATTGAGTTCTTTTGGC
GTTCTAAAACAAGCAACCCCATACGAACTGTGAAGACAGCTTACCG
Run BLAST on NCBI

transcript from alignment at sc0000439:67146..67491

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023075 ID=TCONS_00023075|Name=TCONS_00023075|organism=Clytia hemisphaerica|type=transcript|length=346bp|location=Sequence derived from alignment at sc0000439:67146..67491 (Clytia hemisphaerica)
CGGTAAGCTGTCTTCACAGTTCGTATGGGGTTGCTTGTTTTAGAACGCCA
AAAGAACTCAATTTTCTGTGAGTGAAAACCAGGTCTAGCACTTACACTAT
GCGTGGTTTCTACTAACGTCAatagaaaaaatgattttcagtGTTTGTTT
GTAACTAGAACTGTGTAAGTGGTATTTGTTTTCTCAGGGCGTGTATTTTA
CTGACCAACAAAAGTATTATTGATGTAAGAGAAGTTTTCGAAGACCCTTT
GATCGACGTGTTGAATGAAATTACGGTCGATGGGCGTCAGGCGAGTTGCT
TCTTCTGTAAATTCTGGATCGAAATTGTCATGTGACCTCTTGGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012962XLOC_012962Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023075-exon-sc0000439-1491911889:67146..67491TCONS_00023075-exon-sc0000439-1491911889:67146..67491Clytia hemisphaericaexon
TCONS_00023075-exon-sc0000439-1510915933:67146..67491TCONS_00023075-exon-sc0000439-1510915933:67146..67491Clytia hemisphaericaexon
TCONS_00023075-exon-sc0000439-1575043694:67146..67491TCONS_00023075-exon-sc0000439-1575043694:67146..67491Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000439supercontigsc0000439:67146..67491 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.4187	21.6041	29.1286	27.5764	46.632	25.507	57.8038	60.9203	32.7298	25.966	17.9727	20.2992	26.2627	27.036	18.6132	19.6479	18.0552	25.4441	30.0869	33.8475	28.9045	24.2564	17.9682	20.2185	27.9208	36.7265	26.6952	27.9412	22.2213	13.9755
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023075 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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