TCONS_00023044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023044
Unique NameTCONS_00023044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023044 ID=TCONS_00023044|Name=TCONS_00023044|organism=Clytia hemisphaerica|type=transcript|length=3330bp
TTTCAGTcagtcattttgaaattttgcattttcgtGCTTTGTTGTGGGAA
GAACAAACTTGGGTAGAATCTCCAAATTACCTTAAAATTCTTTTCAGgtc
taaaagaaaaagaacaaaaaacaaaaatggttgcTCAAACTCTCTTGAAT
TTGAGTGATAAGAAAGATGAAAATAGTGAACCAAGAATGACACCAAAAGT
GTTGAAACAAATTtgcaaaacattgaaattataTCAAACGCCATATTTGA
ATGATGTCTTGTATTTACAttacaaaggattttcaaagattgaaagcctg
gatgaatacactggtttgaAATGTTTATGGTTAGAATGTAATGGTATAAC
AGCTATCGAGAATATAGCACATTTAAAAGAATTGAGATGTTTATATCTTC
AACAAAATCTGATCAGCAAGCTTGGTAATCTTGAAGAGTTGTCTAATCTT
GACACTTTGAATGTTAGTAATAATTGTATCAACCTGATCGAAAATATATC
TTGTCTTGGAAAATTGAATACGTTACAGATCAGTCATAATCGTTTGGAGT
CGTTTGAAGATGTTGAACATTTATCGGAATGTCAAAGTATTGGTGTGCTT
GACTTATCCAATAATCGTTTAAAAGATCCAAAAATCACAGAGATTTTCTC
ACTGATGAGTAACCTCCATGTTTTAAATCTAATGGGAAATCCTGTCGCCA
AGGAGATCAAAAATTACCGTAAAAATGTCATTCTGAGCTGTAAAAATCTA
ACTTATCTGGATGATCGACCTGTCTTCCCTCAAGAGCGTGCATGTACAGA
GGCTTGGGCACGAGGTGGTCGGGAAGCTGAGTTAGCTGAGAAGGAATTTT
GGGTAAATAAAGAACGTAGAAAAATTCAAGAGAGTGTTGATTATTTACGT
TCAATCCGTGAAAACGCAAGACGAAACATGCTACACAGTGAAAGTAAAGA
TGAGGGCATTGAGATTCTGGATATCAGCCAAGAAACGGAGGTTTCTGAGT
CAGAGGAAGCTGAGGTTAATGACGAACCAACATTACCAGACCTTGAGGAT
CTGTCAGATAGTGATGAAGATGACAAAGATGACATCATAAGTGCCACAAA
CAATACAACCTCTGCCAATGCTGGTGAAAATCGAAGTGATATTTTCATCA
CATCTCCATCAACATTATCCAGTGTTCAACAAAGACCTCTGACAGCTGAT
CCTATAATGCAAGCATATccaaaacaaatgaaacaaaatattACACCTGC
GGCTGTTTCCAATGATAATGATAATACTTTAGATTCTGTTACCAGCCAAC
AGAAGTCCATGGATGAAACAACAACCGACTTTTTCACCAATCTTAACAAA
CTGGCCACTTTGTCACATCACCAAGTTTCTTCTTCACATAATGAACCAAA
GACCGATTCAAATCAGGAGATTCCGTTCATCACCAGATCTGACACCAAAC
CAACCAACAATATGTCTTCAAGTGTTTTTTCAAGTGTTGAAAGAACTCTT
GAACCAAACATATCATCAGATTTACTCTTCATTTCAAACGATGAAGGAGA
TCAAGAAAAGAACACTCCTCTTGATAATGATGAGGATATCGAGACAATCG
AATTGACCAATGAAACGAAACCATCACTAATAATCGAGGAGATCGTTACA
AAGAAGAAAGAGGATGGTGGTTTCTTTATCAAAGAAGCGAACGATGCCAC
TCGAAAGATGAACGAGGAAAGTGAATTGACAGCACCGTCGTCgcaacaaa
agaagaaattattaATCCAAGAAATTGATGGTGTCGATGAAGATGAAGTT
GATTGATTGAATAAACAGAACAGGATTAATCCGAGTTTACCATGGTCGAA
TGACGTCAAATTGCTGAATACTTTAATCGTCTTAATTTTCCCGAGATTCA
ATTTCGcattttttgcgaatttttaccttttttcgcgaaaataaaaatca
cgaaattgcATGAGATTACTGACTCGCAAGATTAAATTTAGGCGAAATCT
AAAACTTTTTTGCTATATGGGACAAAAATTGGCGTTTCAGGGTCATTttt
aactaatttttgcgaattttcgGCGCttaaaattgatccaaataaaGTAT
CTGAATACGCTGATGAAATGTTTTTCAGACACTTTTTCTCATTGACTTTG
GTAAACCAAGCTCAATCTTCTCTCGTGTAGCCTTTGGCATATAAAAAGTT
CATCATCCATGATAGATGATAATGGATCAGAACTGTAAAGTGATTGTCTT
CTTTTACAACTCACCTTCACAcaattcttttgtgtttacttgtAAAACCG
GTATAAAAACTTCTaggaaaaggaagatttttGCAATTGAGAGAAGTTTA
TAAAACTTTGGACGGGGtcattataaagtttttatttttaactcCCAAAA
TTGGAGCATAAGTaattcttttcataaattattttgagtgcaactaCTGC
TTCGTTTCGAAACTATTACCGAGGTGATTATATCCCTACACTGGCGGATT
TCGAACAATAAAGCAAAAACGTCGAAAACAtacgaaggagtgcaacgctc
gttaaaagacaatgaaattaaacctcttcctctgataagttcaacatggt
ctaaaaccgctCTAGAGCCTTCAAATGTTACTATTATAGATAGAGGTAAG
TTTTTAtgaactcctctgggaatcaattacAATTATTTTGAACCTAAGAG
TAAAGTGCAACTAACCTGAAATTTGATAGAAGGACAGAATGAAAATATGG
TGATTCTTTCTCAGTCGTTCATCaatctcaaaaatctcaaaacggttatt
tttcaaaatcaaatttggtTTCAGGTACCTtttcggggaaaacttcgtaa
gggaaaattttcgtcacttggccaaaatttcgtcacttttccccgataag
gtaaccCTTGTTGACTGTTACAGATATTGGTTTTAAAGGAAATGTCATTT
TTATGTTATATACAGTTTGTTGTAAATATTCATAGATATTCTgcttaaat
tattttaatttcgTAAATAACAAAGAGTGATATATGTgaaagtcttttga
aatttgaatttaaatcgGGTAAAATTGAGAAGGTGAGCCGACCTGATACC
TCTTCTTTGCACATtatttattattcgaatcttctGCCATTATGATAGTC
CTCAAAAACGCTACCGGCTGTATTGGGTACGacaaaaattcaccaaaatt
ggTTCTTAAAAAGTTTGACCTATCGTCAaaataagttttaaattttaagt
tagaGACCAAGGAGGCTTTCATCTCAACGCAAGAGATATTGgattaggct
tctgctcatcctctagcgaaaagatttttc
Run BLAST on NCBI

protein sequence of TCONS_00023044-protein

>TCONS_00023044-protein ID=TCONS_00023044-protein|Name=TCONS_00023044-protein|organism=Clytia hemisphaerica|type=polypeptide|length=559bp
MVAQTLLNLSDKKDENSEPRMTPKVLKQICKTLKLYQTPYLNDVLYLHYK
GFSKIESLDEYTGLKCLWLECNGITAIENIAHLKELRCLYLQQNLISKLG
NLEELSNLDTLNVSNNCINLIENISCLGKLNTLQISHNRLESFEDVEHLS
ECQSIGVLDLSNNRLKDPKITEIFSLMSNLHVLNLMGNPVAKEIKNYRKN
VILSCKNLTYLDDRPVFPQERACTEAWARGGREAELAEKEFWVNKERRKI
QESVDYLRSIRENARRNMLHSESKDEGIEILDISQETEVSESEEAEVNDE
PTLPDLEDLSDSDEDDKDDIISATNNTTSANAGENRSDIFITSPSTLSSV
QQRPLTADPIMQAYPKQMKQNITPAAVSNDNDNTLDSVTSQQKSMDETTT
DFFTNLNKLATLSHHQVSSSHNEPKTDSNQEIPFITRSDTKPTNNMSSSV
FSSVERTLEPNISSDLLFISNDEGDQEKNTPLDNDEDIETIELTNETKPS
LIIEEIVTKKKEDGGFFIKEANDATRKMNEESELTAPSSQQKKKLLIQEI
DGVDEDEVD
Run BLAST on NCBI

transcript from alignment at sc0000439:251886..259482+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023044 ID=TCONS_00023044|Name=TCONS_00023044|organism=Clytia hemisphaerica|type=transcript|length=7597bp|location=Sequence derived from alignment at sc0000439:251886..259482+ (Clytia hemisphaerica)
TTTCAGTcagtcattttgaaattttgcattttcgtGCTTTGTTGTGGGAA
GAACAAACTTGGGTAGAATCTCCAAATTACCTTAAAATTCTTTTCAGgtc
taaaagaaaaagaacaaaaaacaaaaatggttgcTCAAACTCTCTTGAAT
TTGAGTGATAAGAAAGATGAAAATAGTGAACCAAGAATGACACCAAAAGT
GTTGAAACAAATTtgcaaaacattgaaattataTCAAACGCCATATTTGA
ATGATGTCTTGTATTTACAttacaaaggattttcaaagattgaaagcctg
gatgaatacactggtttgaAATGTTTATGGTTAGAATGTAATGGTATAAC
AGCTATCGAGAATATAGCACATTTAAAAGAATTGAGATGTTTATATCTTC
AACAAAATCTGATCAGCAAGCTTGGTAATCTTGAAGAGTTGTCTAATCTT
GACACTTTGAATGTTAGTAATAATTGTATCAACCTGATCGAAAATATATC
TTGTCTTGGAAAATTGAATACGTTACAGATCAGTCATAATCGTTTGGAGT
CGTTTGAAGATGTTGAACATTTATCGGAATGTCAAAGTATTGGTGTGCTT
GACTTATCCAATAATCGTTTAAAAGATCCAAAAATCACAGAGATTTTCTC
ACTGATGAGTAACCTCCATGTTTTAAATCTAATGGGAAATCCTGTCGCCA
AGGAGATCAAAAATTACCGTAAAAATGTCATTCTGAGCTGTAAAAATCTA
ACTTATCTGGATGATCGACCTGTCTTCCCTCAAGAGCGTGCATGTACAGA
GGCTTGGGCACGAGGTGGTCGGGAAGCTGAGTTAGCTGAGAAGGAATTTT
GGGTAAATAAAGAACGTAGAAAAATTCAAGAGAGTGTTGATTATTTACGT
TCAATCCGTGAAAACGCAAGACGAAACATGCTACACAGTGAAAGTAAAGA
TGAGGGCATTGAGATTCTGGATATCAGCCAAGAAACGGAGGTTTCTGAGT
CAGAGGAAGCTGAGGTATTATTttatacttttattttttttgtgatcTTT
TAGTTCCTCAATCGACCAAGTACAACGCACGGAGCTCTTTAATTTCAGGT
AGATTTTCGTCTCAGTAAGGTCCAATTAGGAGGTATTTCTGTcacaaatt
taacaaaaattcgataaaatttgaagaatcttgCCTTATTTGTTGTATAA
GTCCATTTCCATctgaaataaaaagttttgctTGATGGACCAATGCGAAT
AGTACTACCTTTGTTTTGGTGAATTGTAAGGGACTTTTTGAATTAATAAG
GGTAATGGGTAATGGCTTTATACAACCTTTGTTAGATATCTATAAACAAT
CCCGGGTAGTACCTATTGAAATCGTGTTTTTGAATTTGTAATGTAAAAGT
TTTTACTTAACATTTATAATTCCATTCTGCTCTGTATAGTTCTTTTTCAT
TGTTGTAATTGCTGTCATATGATAAAATGTGTTCTAACCAGACTACGATG
AACGGCTTGAagcattttttgtttacatagAAGGGTTTGAAAGTTACGAT
CAGACTAACAAGAGATATTTTGAAGAAACTTTAAATCTTCTCCTCTATCG
TTTAGACGGCCGATTTTCGCCCTGCCTTTTCTAATTGTGGATTAAAGCCA
ATACGTtcccctcttttgacgtcaatgcaatgacttctttcaataAAGAT
TTTCCCGACTTTTGCCTACTTTTtacctactctaacaattagaatatgTA
GGGTGGAAAGTCGgacgtctaaactagagctcaGGTTCCATTTCTGTTGA
ACCGAGTGCATTTCACTTCGTAAGACTTTGCATTAGCATGATCGATTGTT
GAATATTAATctgatattttgaccaaattctAAACTTTCTCCTCTGTCAG
CTGTTCCTCCATTTCTGTTGAAATGGATGCATTTCACTTCGTACAATTTT
GTAATTGTCAACCTTTTTTAAGACATAGTTAACTATTTTCGATTCCCTAC
GGGTAGTTTAAGCATGATAAATTATTGAATGTTTATCTGATAATTatatt
gttttttgaataatgtATAGGTTAATGACGAACCAACATTACCAGACCTT
GAGGATCTGTCAGATAGTGATGAAGATGACAAAGATGACATCATAAGTGC
CACAAACAATACAACCTCTGCCAATGCTGGTGAAAATCGAAGTGATATTT
TCATCACATCTCCATCAACATTATCCAGTGTTCAACAAAGACCTCTGACA
GCTGATCCTATAATGCAAGCATATccaaaacaaatgaaacaaaatattAC
ACCTGCGGCTGTTTCCAATGATAATGATAATACTTTAGGTGAGGTGATTT
TCGCGGgaagaaacttttttccatgCTTTGAATTTCAAAACCTATTTTCA
CATTTAGcaagaaatctttctttttaaaataactctacaagatttttaag
atctagttGACCTTTCTGTATGATACGTAGGCCAATTCCTAGAAATTTCA
ACCACGATTGGAGACCTATGCTCGATTGATTGGTCTCTATGGGTGCTATC
AAATGCATGGGTCGCGGCGCTTCTAAGTTCTTAACGATTGTATCAAGTTA
AAAATGAGCGTGACATAACCTTTCCACTGGAATGGCCAACAAAGTGATCT
CCCTTCTTGTCTATTTTCCCGATTGTCAAGTTTTCCATGATTGATAATAA
GCTCTTACTTACTTACCTTTTAGATTCTGTTACCAGCCAACAGAAGTCCA
TGGATGAAACAACAACCGACTTTTTCACCAATCTTAACAAACTGGCCACT
TTGTCACATCACCAAGTTTCTTCTTCACATAATGAACCAAAGACCGATTC
AAATCAGGAGATTCCGTTCATCACCAGATCTGACACCAAACCAACCAACA
ATATGTCTTCAAGTGTTTTTTCAAGTAAGTATTGAGTGAAGTTCGGTAAA
TTCCTCAACATCAAAGAGTTCACAAAGGTTTGTtgaataaatgaaaaaga
acgTTTTTCTTAAACCTAGTTAACCAAAGTCTTTTATCTGATTTTCTAGA
GATTTAGAACTATAAAAGCACTGCTCGGTGTGGCTACTTTTGTGTTACAA
CGAATATAAATTTATGAATATAAGTTTCAATTTAATAACCCTTatataca
cccctttctcacagacccggtaggattttttcagccgaTGGGGATAAAac
taacggactgaaactcgatggggattggtattccaatattttttatgcCT
GGCGATTTaaatttttcgttttcaaatcagaaaattcggtggggatggga
aaaatagcataatgtttattttcagtggggacaaaagttGGAGGATTATT
TTCGACAAGGGACGATTTTTGAACATCTTTTTCAGTGGGTCTGTGGGAAG
GGGTGTCATCATCAAGCAGTTACTACATTTTTGTGATAAAGATTTCGGAT
TCGTCTAGATCTTTAGATGTGATCAGTAGGCCGTACCCATTGGGtcattt
ctttaaattcacatACGTATGGAGGGTTGACGAACATTTTCAAGCCAAAA
ACACTTCTttgaaatgtgtggatacccccaggaaaatggtaaaattttca
aaaaatcccttggaaaatttcttttcataccttaaagtgacgtGACCTTA
AAGTCttttaccctctggaaattctaaaataattttttaccccTTGGAAT
TCTGCTTGAATTTCCCtttggaaatgttcgtccactccaatgtatggata
taaaatggaatgaccctttgatttttcttttgccATAGGTGTTGAAAGAA
CTCTTGAACCAAACATATCATCAGATTTACTCTTCATTTCAAACGATGAA
GGAGATCAAGAAAAGAACACTCCTCTTGATAATGATGAGGATATCGAGAC
AATCGAATTGACCAATGAAACGAAACCATCACTAATAATCGAGGTAAGCT
TGACTTGTTACTAGTATGTGGACCTTAATTTCGTACCAAATACCATTTGA
ccatattttgattttactgatggacctAATGCGGACCTTTTTGGGAGCGC
TACCAAAATCATAAAAACGTGAGCTAAAAGACTGGATACGAGTTTCTTTG
GTATGTCTATTCTATTATTGAGGTAAAGGTATTCAATAGAGCTCAAAAAA
CTTTAAGTTTGAGAGAAGAgcaaataaaaacagaaaataaagCGACTGCC
AGTCAGGAATATGTTGTTCAAATTAGCCGATCATCAGTTGTTTACAAAGA
TGGATTGGTTATTTAGACGATAGCTTATCGGTTGAATAACTGCTGATTGA
TTGCTTACatttaggttccaaataaagggGAAAATCtttgagattttaat
aaacagggggacctaattgccgggggggttggaaattgtacttctgaaag
cccaaaaataaggtaaatataggctgaaatcaggctatttagagcaaaat
aaggagccttctgtttgacagctgaaaatattcttaaaaattaacaagcg
gggggggggttattTGAAACCTAAGAGTACATAAAATACGCTGaatttaa
aactttgaaaaggGGGTTTAGATTTTGATAGAGTGTCatcctataaaaaa
acatgatataaaacaggggggggtcaagcagttagtacaagacatcatgc
ctactaagtgattctttggaggaaagaggccacaccaccaccctttgacA
GTTAGTATGAAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNctaactgcttgaccccccccc
ctgtataaAATGGATGATTATATAGCTCGAAAAATTGTGCATTTGGAAGT
TAAATTGGGGATTTTAGATTTTGGTAAAAGAATAGCCATTctcgattttt
tcaattttttttaatcagcTCGCAAGACCGTTATTTTAGTATACGATTCA
ACCTTGGGAGGAACCAAGGTTCCATGGGTTAAAAACAGTCTATTTGAAAA
GGTTGAACATACTTCTTGTATTCCACTTAAGGTTTTATCATTTTCCGTGT
TTTAGGAGATCGTTACAAAGAAGAAAGAGGATGGTGGTTTCTTTATCAAA
GAAGCGAACGATGCCACTCGAAAGATGAACGAGGAAAGTGAATTGACAGC
ACCGTCGTCgcaacaaaagaagaaattattaATCCAAGAAATTGATGGTG
TCGATGAAGATGAAGTTGATTGATTGAATAAACAGAACAGGATTAATCCG
AGTTTACCATGGTCGAATGACGTCAAATTGCTGAATACTTTAATCGTCTT
AATTTTCCCGAGATTCAATTTCGcattttttgcgaatttttacctttttt
cgcgaaaataaaaatcacgaaattgcATGAGATTACTGACTCGCAAGATT
AAATTTAGGCGAAATCTAAAACTTTTTTGCTATATGGGACAAAAATTGGC
GTTTCAGGGTCATTtttaactaatttttgcgaattttcgGCGCttaaaat
tgatccaaataaaGTATCTGAATACGCTGATGAAATGTTTTTCAGACACT
TTTTCTCATTGACTTTGGTAAACCAAGCTCAATCTTCTCTCGTGTAGCCT
TTGGCATATAAAAAGTTCATCATCCATGATAGATGATAATGGATCAGAAC
TGTAAAGTGATTGTCTTCTTTTACAACTCACCTTCACAcaattcttttgt
gtttacttgtAAAACCGGTATAAAAACTTCTaggaaaaggaagatttttG
CAATTGAGAGAAGTTTATAAAACTTTGGACGGGGtcattataaagttttt
atttttaactcCCAAAATTGGAGCATAAGTaattcttttcataaattatt
ttgagtgcaactaCTGCTTCGTTTCGAAACTATTACCGAGGTGATTATAT
CCCTACACTGGCGGATTTCGAACAATAAAGCAAAAACGTCGAAAACAtac
gaaggagtgcaacgctcgttaaaagacaatgaaattaaacctcttcctct
gataagttcaacatggtctaaaaccgctCTAGAGCCTTCAAATGTTACTA
TTATAGATAGAGGTAAGTTTTTAtgaactcctctgggaatcaattacAAT
TATTTTGAACCTAAGAGTAAAGTGCAACTAACCTGAAATTTGATAGAAGG
ACAGAATGAAAATATGGTGATTCTTTCTCAGTCGTTCATCaatctcaaaa
atctcaaaacggttatttttcaaaatcaaatttggtTTCAGGTACCTttt
cggggaaaacttcgtaagggaaaattttcgtcacttggccaaaatttcgt
cacttttccccgataaggtaaccCTTGTTGACTGTTACAGATATTGGTTT
TAAAGGAAATGTCATTTTTATGTTATATACAGTTTGTTGTAAATATTCAT
AGATATTCTgcttaaattattttaatttcgTAAATAACAAAGAGTGATAT
ATGTgaaagtcttttgaaatttgaatttaaatcgGGTAAAATTGAGAAGG
TGAGCCGACCTGATACCTCTTCTTTGCACATtatttattattcgaatctt
ctGCCATTATGATAGTCCTCAAAAACGCTACCGGCTGTATTGGGTACGac
aaaaattcaccaaaattggTTCTTAAAAAGTTTGACCTATCGTCAaaata
agttttaaattttaagttagaGACCAAGGAGGCTTTCATCTCAACGCAAG
AGATATTGgattaggcttctgctcatcctctagcgaaaagatttttc

Coding sequence (CDS) from alignment at sc0000439:251886..259482+

>TCONS_00023044 ID=TCONS_00023044|Name=TCONS_00023044|organism=Clytia hemisphaerica|type=CDS|length=8400bp|location=Sequence derived from alignment at sc0000439:251886..259482+ (Clytia hemisphaerica)
atggttgcTCAAACTCTCTTGAATTTGAGTGATAAGAAAGATGAAAATAG
TGAACCAAGAATGACACCAAAAGTGTTGAAACAAATTtgcaaaacattga
aattataTCAAACGCCATATTTGAATGATGTCTTGTATTTACAttacaaa
ggattttcaaagattgaaagcctggatgaatacactggtttgaAATGTTT
ATGGTTAGAATGTAATGGTATAACAGCTATCGAGAATATAGCACATTTAA
AAGAATTGAGATGTTTATATCTTCAACAAAATCTGATCAGCAAGCTTGGT
AATCTTGAAGAGTTGTCTAATCTTGACACTTTGAATGTTAGTAATAATTG
TATCAACCTGATCGAAAATATATCTTGTCTTGGAAAATTGAATACGTTAC
AGATCAGTCATAATCGTTTGGAGTCGTTTGAAGATGTTGAACATTTATCG
GAATGTCAAAGTATTGGTGTGCTTGACTTATCCAATAATCGTTTAAAAGA
TCCAAAAATCACAGAGATTTTCTCACTGATGAGTAACCTCCATGTTTTAA
ATCTAATGGGAAATCCTGTCGCCAAGGAGATCAAAAATTACCGTAAAAAT
GTCATTCTGAGCTGTAAAAATCTAACTTATCTGGATGATCGACCTGTCTT
CCCTCAAGAGCGTGCATGTACAGAGGCTTGGGCACGAGGTGGTCGGGAAG
CTGAGTTAGCTGAGAAGGAATTTTGGGTAAATAAAGAACGTAGAAAAATT
CAAGAGAGTGTTGATTATTTACGTTCAATCCGTGAAAACGCAAGACGAAA
CATGCTACACAGTGAAAGTAAAGATGAGGGCATTGAGATTCTGGATATCA
GCCAAGAAACGGAGGTTTCTGAGTCAGAGGAAGCTGAGGTTAATGACGAA
CCAACATTACCAGACCTTGAGGATCTGTCAGATAGTGATGAAGATGACAA
AGATGACATCATAAGTGCCACAAACAATACAACCTCTGCCAATGCTGGTG
AAAATCGAAGTGATATTTTCATCACATCTCCATCAACATTATCCAGTGTT
CAACAAAGACCTCTGACAGCTGATCCTATAATGCAAGCATATccaaaaca
aatgaaacaaaatattACACCTGCGGCTGTTTCCAATGATAATGATAATA
CTTTAGATTCTGTTACCAGCCAACAGAAGTCCATGGATGAAACAACAACC
GACTTTTTCACCAATCTTAACAAACTGGCCACTTTGTCACATCACCAAGT
TTCTTCTTCACATAATGAACCAAAGACCGATTCAAATCAGGAGATTCCGT
TCATCACCAGATCTGACACCAAACCAACCAACAATATGTCTTCAAGTGTT
TTTTCAAGTGTTGAAAGAACTCTTGAACCAAACATATCATCAGATTTACT
CTTCATTTCAAACGATGAAGGAGATCAAGAAAAGAACACTCCTCTTGATA
ATGATGAGGATATCGAGACAATCGAATTGACCAATGAAACGAAACCATCA
CTAATAATCGAGGAGATCGTTACAAAGAAGAAAGAGGATGGTGGTTTCTT
TATCAAAGAAGCGAACGATGCCACTCGAAAGATGAACGAGGAAAGTGAAT
TGACAGCACCGTCGTCgcaacaaaagaagaaattattaATCCAAGAAATT
GATGGTGTCGATGAAGATGAAGTTGATTGAatggttgcTCAAACTCTCTT
GAATTTGAGTGATAAGAAAGATGAAAATAGTGAACCAAGAATGACACCAA
AAGTGTTGAAACAAATTtgcaaaacattgaaattataTCAAACGCCATAT
TTGAATGATGTCTTGTATTTACAttacaaaggattttcaaagattgaaag
cctggatgaatacactggtttgaAATGTTTATGGTTAGAATGTAATGGTA
TAACAGCTATCGAGAATATAGCACATTTAAAAGAATTGAGATGTTTATAT
CTTCAACAAAATCTGATCAGCAAGCTTGGTAATCTTGAAGAGTTGTCTAA
TCTTGACACTTTGAATGTTAGTAATAATTGTATCAACCTGATCGAAAATA
TATCTTGTCTTGGAAAATTGAATACGTTACAGATCAGTCATAATCGTTTG
GAGTCGTTTGAAGATGTTGAACATTTATCGGAATGTCAAAGTATTGGTGT
GCTTGACTTATCCAATAATCGTTTAAAAGATCCAAAAATCACAGAGATTT
TCTCACTGATGAGTAACCTCCATGTTTTAAATCTAATGGGAAATCCTGTC
GCCAAGGAGATCAAAAATTACCGTAAAAATGTCATTCTGAGCTGTAAAAA
TCTAACTTATCTGGATGATCGACCTGTCTTCCCTCAAGAGCGTGCATGTA
CAGAGGCTTGGGCACGAGGTGGTCGGGAAGCTGAGTTAGCTGAGAAGGAA
TTTTGGGTAAATAAAGAACGTAGAAAAATTCAAGAGAGTGTTGATTATTT
ACGTTCAATCCGTGAAAACGCAAGACGAAACATGCTACACAGTGAAAGTA
AAGATGAGGGCATTGAGATTCTGGATATCAGCCAAGAAACGGAGGTTTCT
GAGTCAGAGGAAGCTGAGGTTAATGACGAACCAACATTACCAGACCTTGA
GGATCTGTCAGATAGTGATGAAGATGACAAAGATGACATCATAAGTGCCA
CAAACAATACAACCTCTGCCAATGCTGGTGAAAATCGAAGTGATATTTTC
ATCACATCTCCATCAACATTATCCAGTGTTCAACAAAGACCTCTGACAGC
TGATCCTATAATGCAAGCATATccaaaacaaatgaaacaaaatattACAC
CTGCGGCTGTTTCCAATGATAATGATAATACTTTAGATTCTGTTACCAGC
CAACAGAAGTCCATGGATGAAACAACAACCGACTTTTTCACCAATCTTAA
CAAACTGGCCACTTTGTCACATCACCAAGTTTCTTCTTCACATAATGAAC
CAAAGACCGATTCAAATCAGGAGATTCCGTTCATCACCAGATCTGACACC
AAACCAACCAACAATATGTCTTCAAGTGTTTTTTCAAGTGTTGAAAGAAC
TCTTGAACCAAACATATCATCAGATTTACTCTTCATTTCAAACGATGAAG
GAGATCAAGAAAAGAACACTCCTCTTGATAATGATGAGGATATCGAGACA
ATCGAATTGACCAATGAAACGAAACCATCACTAATAATCGAGGAGATCGT
TACAAAGAAGAAAGAGGATGGTGGTTTCTTTATCAAAGAAGCGAACGATG
CCACTCGAAAGATGAACGAGGAAAGTGAATTGACAGCACCGTCGTCgcaa
caaaagaagaaattattaATCCAAGAAATTGATGGTGTCGATGAAGATGA
AGTTGATTGAatggttgcTCAAACTCTCTTGAATTTGAGTGATAAGAAAG
ATGAAAATAGTGAACCAAGAATGACACCAAAAGTGTTGAAACAAATTtgc
aaaacattgaaattataTCAAACGCCATATTTGAATGATGTCTTGTATTT
ACAttacaaaggattttcaaagattgaaagcctggatgaatacactggtt
tgaAATGTTTATGGTTAGAATGTAATGGTATAACAGCTATCGAGAATATA
GCACATTTAAAAGAATTGAGATGTTTATATCTTCAACAAAATCTGATCAG
CAAGCTTGGTAATCTTGAAGAGTTGTCTAATCTTGACACTTTGAATGTTA
GTAATAATTGTATCAACCTGATCGAAAATATATCTTGTCTTGGAAAATTG
AATACGTTACAGATCAGTCATAATCGTTTGGAGTCGTTTGAAGATGTTGA
ACATTTATCGGAATGTCAAAGTATTGGTGTGCTTGACTTATCCAATAATC
GTTTAAAAGATCCAAAAATCACAGAGATTTTCTCACTGATGAGTAACCTC
CATGTTTTAAATCTAATGGGAAATCCTGTCGCCAAGGAGATCAAAAATTA
CCGTAAAAATGTCATTCTGAGCTGTAAAAATCTAACTTATCTGGATGATC
GACCTGTCTTCCCTCAAGAGCGTGCATGTACAGAGGCTTGGGCACGAGGT
GGTCGGGAAGCTGAGTTAGCTGAGAAGGAATTTTGGGTAAATAAAGAACG
TAGAAAAATTCAAGAGAGTGTTGATTATTTACGTTCAATCCGTGAAAACG
CAAGACGAAACATGCTACACAGTGAAAGTAAAGATGAGGGCATTGAGATT
CTGGATATCAGCCAAGAAACGGAGGTTTCTGAGTCAGAGGAAGCTGAGGT
TAATGACGAACCAACATTACCAGACCTTGAGGATCTGTCAGATAGTGATG
AAGATGACAAAGATGACATCATAAGTGCCACAAACAATACAACCTCTGCC
AATGCTGGTGAAAATCGAAGTGATATTTTCATCACATCTCCATCAACATT
ATCCAGTGTTCAACAAAGACCTCTGACAGCTGATCCTATAATGCAAGCAT
ATccaaaacaaatgaaacaaaatattACACCTGCGGCTGTTTCCAATGAT
AATGATAATACTTTAGATTCTGTTACCAGCCAACAGAAGTCCATGGATGA
AACAACAACCGACTTTTTCACCAATCTTAACAAACTGGCCACTTTGTCAC
ATCACCAAGTTTCTTCTTCACATAATGAACCAAAGACCGATTCAAATCAG
GAGATTCCGTTCATCACCAGATCTGACACCAAACCAACCAACAATATGTC
TTCAAGTGTTTTTTCAAGTGTTGAAAGAACTCTTGAACCAAACATATCAT
CAGATTTACTCTTCATTTCAAACGATGAAGGAGATCAAGAAAAGAACACT
CCTCTTGATAATGATGAGGATATCGAGACAATCGAATTGACCAATGAAAC
GAAACCATCACTAATAATCGAGGAGATCGTTACAAAGAAGAAAGAGGATG
GTGGTTTCTTTATCAAAGAAGCGAACGATGCCACTCGAAAGATGAACGAG
GAAAGTGAATTGACAGCACCGTCGTCgcaacaaaagaagaaattattaAT
CCAAGAAATTGATGGTGTCGATGAAGATGAAGTTGATTGAatggttgcTC
AAACTCTCTTGAATTTGAGTGATAAGAAAGATGAAAATAGTGAACCAAGA
ATGACACCAAAAGTGTTGAAACAAATTtgcaaaacattgaaattataTCA
AACGCCATATTTGAATGATGTCTTGTATTTACAttacaaaggattttcaa
agattgaaagcctggatgaatacactggtttgaAATGTTTATGGTTAGAA
TGTAATGGTATAACAGCTATCGAGAATATAGCACATTTAAAAGAATTGAG
ATGTTTATATCTTCAACAAAATCTGATCAGCAAGCTTGGTAATCTTGAAG
AGTTGTCTAATCTTGACACTTTGAATGTTAGTAATAATTGTATCAACCTG
ATCGAAAATATATCTTGTCTTGGAAAATTGAATACGTTACAGATCAGTCA
TAATCGTTTGGAGTCGTTTGAAGATGTTGAACATTTATCGGAATGTCAAA
GTATTGGTGTGCTTGACTTATCCAATAATCGTTTAAAAGATCCAAAAATC
ACAGAGATTTTCTCACTGATGAGTAACCTCCATGTTTTAAATCTAATGGG
AAATCCTGTCGCCAAGGAGATCAAAAATTACCGTAAAAATGTCATTCTGA
GCTGTAAAAATCTAACTTATCTGGATGATCGACCTGTCTTCCCTCAAGAG
CGTGCATGTACAGAGGCTTGGGCACGAGGTGGTCGGGAAGCTGAGTTAGC
TGAGAAGGAATTTTGGGTAAATAAAGAACGTAGAAAAATTCAAGAGAGTG
TTGATTATTTACGTTCAATCCGTGAAAACGCAAGACGAAACATGCTACAC
AGTGAAAGTAAAGATGAGGGCATTGAGATTCTGGATATCAGCCAAGAAAC
GGAGGTTTCTGAGTCAGAGGAAGCTGAGGTTAATGACGAACCAACATTAC
CAGACCTTGAGGATCTGTCAGATAGTGATGAAGATGACAAAGATGACATC
ATAAGTGCCACAAACAATACAACCTCTGCCAATGCTGGTGAAAATCGAAG
TGATATTTTCATCACATCTCCATCAACATTATCCAGTGTTCAACAAAGAC
CTCTGACAGCTGATCCTATAATGCAAGCATATccaaaacaaatgaaacaa
aatattACACCTGCGGCTGTTTCCAATGATAATGATAATACTTTAGATTC
TGTTACCAGCCAACAGAAGTCCATGGATGAAACAACAACCGACTTTTTCA
CCAATCTTAACAAACTGGCCACTTTGTCACATCACCAAGTTTCTTCTTCA
CATAATGAACCAAAGACCGATTCAAATCAGGAGATTCCGTTCATCACCAG
ATCTGACACCAAACCAACCAACAATATGTCTTCAAGTGTTTTTTCAAGTG
TTGAAAGAACTCTTGAACCAAACATATCATCAGATTTACTCTTCATTTCA
AACGATGAAGGAGATCAAGAAAAGAACACTCCTCTTGATAATGATGAGGA
TATCGAGACAATCGAATTGACCAATGAAACGAAACCATCACTAATAATCG
AGGAGATCGTTACAAAGAAGAAAGAGGATGGTGGTTTCTTTATCAAAGAA
GCGAACGATGCCACTCGAAAGATGAACGAGGAAAGTGAATTGACAGCACC
GTCGTCgcaacaaaagaagaaattattaATCCAAGAAATTGATGGTGTCG
ATGAAGATGAAGTTGATTGAatggttgcTCAAACTCTCTTGAATTTGAGT
GATAAGAAAGATGAAAATAGTGAACCAAGAATGACACCAAAAGTGTTGAA
ACAAATTtgcaaaacattgaaattataTCAAACGCCATATTTGAATGATG
TCTTGTATTTACAttacaaaggattttcaaagattgaaagcctggatgaa
tacactggtttgaAATGTTTATGGTTAGAATGTAATGGTATAACAGCTAT
CGAGAATATAGCACATTTAAAAGAATTGAGATGTTTATATCTTCAACAAA
ATCTGATCAGCAAGCTTGGTAATCTTGAAGAGTTGTCTAATCTTGACACT
TTGAATGTTAGTAATAATTGTATCAACCTGATCGAAAATATATCTTGTCT
TGGAAAATTGAATACGTTACAGATCAGTCATAATCGTTTGGAGTCGTTTG
AAGATGTTGAACATTTATCGGAATGTCAAAGTATTGGTGTGCTTGACTTA
TCCAATAATCGTTTAAAAGATCCAAAAATCACAGAGATTTTCTCACTGAT
GAGTAACCTCCATGTTTTAAATCTAATGGGAAATCCTGTCGCCAAGGAGA
TCAAAAATTACCGTAAAAATGTCATTCTGAGCTGTAAAAATCTAACTTAT
CTGGATGATCGACCTGTCTTCCCTCAAGAGCGTGCATGTACAGAGGCTTG
GGCACGAGGTGGTCGGGAAGCTGAGTTAGCTGAGAAGGAATTTTGGGTAA
ATAAAGAACGTAGAAAAATTCAAGAGAGTGTTGATTATTTACGTTCAATC
CGTGAAAACGCAAGACGAAACATGCTACACAGTGAAAGTAAAGATGAGGG
CATTGAGATTCTGGATATCAGCCAAGAAACGGAGGTTTCTGAGTCAGAGG
AAGCTGAGGTTAATGACGAACCAACATTACCAGACCTTGAGGATCTGTCA
GATAGTGATGAAGATGACAAAGATGACATCATAAGTGCCACAAACAATAC
AACCTCTGCCAATGCTGGTGAAAATCGAAGTGATATTTTCATCACATCTC
CATCAACATTATCCAGTGTTCAACAAAGACCTCTGACAGCTGATCCTATA
ATGCAAGCATATccaaaacaaatgaaacaaaatattACACCTGCGGCTGT
TTCCAATGATAATGATAATACTTTAGATTCTGTTACCAGCCAACAGAAGT
CCATGGATGAAACAACAACCGACTTTTTCACCAATCTTAACAAACTGGCC
ACTTTGTCACATCACCAAGTTTCTTCTTCACATAATGAACCAAAGACCGA
TTCAAATCAGGAGATTCCGTTCATCACCAGATCTGACACCAAACCAACCA
ACAATATGTCTTCAAGTGTTTTTTCAAGTGTTGAAAGAACTCTTGAACCA
AACATATCATCAGATTTACTCTTCATTTCAAACGATGAAGGAGATCAAGA
AAAGAACACTCCTCTTGATAATGATGAGGATATCGAGACAATCGAATTGA
CCAATGAAACGAAACCATCACTAATAATCGAGGAGATCGTTACAAAGAAG
AAAGAGGATGGTGGTTTCTTTATCAAAGAAGCGAACGATGCCACTCGAAA
GATGAACGAGGAAAGTGAATTGACAGCACCGTCGTCgcaacaaaagaaga
aattattaATCCAAGAAATTGATGGTGTCGATGAAGATGAAGTTGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012948XLOC_012948Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023044-exon-sc0000439-1491911889:251886..252899TCONS_00023044-exon-sc0000439-1491911889:251886..252899Clytia hemisphaericaexon
TCONS_00023044-exon-sc0000439-1510915933:251886..252899TCONS_00023044-exon-sc0000439-1510915933:251886..252899Clytia hemisphaericaexon
TCONS_00023044-exon-sc0000439-1575043694:251886..252899TCONS_00023044-exon-sc0000439-1575043694:251886..252899Clytia hemisphaericaexon
TCONS_00023044-exon-sc0000439-1491911889:253956..254223TCONS_00023044-exon-sc0000439-1491911889:253956..254223Clytia hemisphaericaexon
TCONS_00023044-exon-sc0000439-1510915933:253956..254223TCONS_00023044-exon-sc0000439-1510915933:253956..254223Clytia hemisphaericaexon
TCONS_00023044-exon-sc0000439-1575043694:253956..254223TCONS_00023044-exon-sc0000439-1575043694:253956..254223Clytia hemisphaericaexon
TCONS_00023044-exon-sc0000439-1491911889:254609..254809TCONS_00023044-exon-sc0000439-1491911889:254609..254809Clytia hemisphaericaexon
TCONS_00023044-exon-sc0000439-1510915933:254609..254809TCONS_00023044-exon-sc0000439-1510915933:254609..254809Clytia hemisphaericaexon
TCONS_00023044-exon-sc0000439-1575043694:254609..254809TCONS_00023044-exon-sc0000439-1575043694:254609..254809Clytia hemisphaericaexon
TCONS_00023044-exon-sc0000439-1491911889:255674..255828TCONS_00023044-exon-sc0000439-1491911889:255674..255828Clytia hemisphaericaexon
TCONS_00023044-exon-sc0000439-1510915933:255674..255828TCONS_00023044-exon-sc0000439-1510915933:255674..255828Clytia hemisphaericaexon
TCONS_00023044-exon-sc0000439-1575043694:255674..255828TCONS_00023044-exon-sc0000439-1575043694:255674..255828Clytia hemisphaericaexon
TCONS_00023044-exon-sc0000439-1491911889:257791..259482TCONS_00023044-exon-sc0000439-1491911889:257791..259482Clytia hemisphaericaexon
TCONS_00023044-exon-sc0000439-1510915933:257791..259482TCONS_00023044-exon-sc0000439-1510915933:257791..259482Clytia hemisphaericaexon
TCONS_00023044-exon-sc0000439-1575043694:257791..259482TCONS_00023044-exon-sc0000439-1575043694:257791..259482Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023044-proteinTCONS_00023044-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000439supercontigsc0000439:251886..259482 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.65028	6.82838	4.57235	4.4324	37.3175	26.6789	21.8633	22.9858	12.1176	12.7789	11.6204	7.8511	4.45247	3.78431	3.45376	4.84443	4.48861	5.95495	3.70974	4.09693	5.08891	5.27554	8.27638	8.5564	19.4065	22.2267	10.5527	9.89877	7.83558	8.14884
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00023044 vs. Swiss-Prot (Human)
Match: DAAF1 (Dynein assembly factor 1, axonemal OS=Homo sapiens GN=DNAAF1 PE=1 SV=5)

HSP 1 Score: 319.701 bits (818), Expect = 2.808e-94
Identity = 148/263 (56.27%), Postives = 193/263 (73.38%), Query Frame = 1 
Query:  169 ENSEPRMTPKVLKQICKTLKLYQTPYLNDVLYLHYKGFSKIESLDEYTGLKCLWLECNGITAIENIAHLKELRCLYLQQNLISKLGNLEELSNLDTLNVSNNCINLIENISCLGKLNTLQISHNRLESFEDVEHLSECQSIGVLDLSNNRLKDPKITEIFSLMSNLHVLNLMGNPVAKEIKNYRKNVILSCKNLTYLDDRPVFPQERACTEAWARGGREAELAEKEFWVNKERRKIQESVDYLRSIRENARRNMLHSESKDEG 957
            E+  PRMT   L+++CK  KLY TP LND LYLH+KGF +IE+L+EYTGL+CLWL+ NGI  IEN+    ELRCL+LQ NL+ K+ NLE L  LD LN+SNN I  IEN+SCL  LNTLQ++HN LE+ ED++HL EC  + VLDLS+N+L DP+I  I   M +L VLNLMGNPV ++I NYR+ V +  K+LTYLDDRPVFP++RAC EAWARGG  AE  E++ W ++ER+KI +S++ L  I++ A       ES++ G
Sbjct:   82 EDRGPRMTKSSLQKLCKQHKLYITPALNDTLYLHFKGFDRIENLEEYTGLRCLWLQSNGIQKIENLEAQTELRCLFLQMNLLRKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNHLETVEDIQHLQECLRLCVLDLSHNKLSDPEILSILESMPDLRVLNLMGNPVIRQIPNYRRTVTVRLKHLTYLDDRPVFPKDRACAEAWARGGYAAEKEERQQWESRERKKITDSIEALAMIKQRAEERKRQRESQERG 344
The following BLAST results are available for this feature:
BLAST of TCONS_00023044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DAAF12.808e-9456.27Dynein assembly factor 1, axonemal OS=Homo sapiens... [more]
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