TCONS_00023040 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023040
Unique NameTCONS_00023040
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1542

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023040 ID=TCONS_00023040|Name=TCONS_00023040|organism=Clytia hemisphaerica|type=transcript|length=1542bp
CCTTGATAGACCTCCACCCAGAGGTGGCTTTCGTGGTAGAGGCCGTGGGC
GTGGGGATTATGGTGGCCGTGGTGACTATGGTGGCCGAGGTGGAGGAAGA
GGAAGAGGTGACTACAGCCGTGACACCTACCAGAGGGATCCTTACGCCAG
AGACCCGTATCTTCCGAGGGACCCTTATGCAAGAGATCCATACCCGAGAG
ACCAACACAGAGATTCTTATGGAAGGGACCCTTACTCAAAAAGTGGATAC
AGGGAACGCAGCCCGCCAAGAACATATGATTATTCAAGAGCACCTGCATC
TGACCCATATGCTGCTGAAAGAAGACGTTTAGCTTACGGGGACTCCACCC
CTTCTAGTAGCTCCGCTCCGTATGCTACTCAAAGTAAACGGGCTGATCCT
TATGCTAGTGGTCAAAGCCAACGAAGTGACCCCTATGCCAGCCAGCGAAG
TGACCCCTCTGCTAGCCAGAGAGGTGATCCCTATGCTAGCCAAAGAAGTG
ATCCCTATGCTAGCCAAAGAAGTGACCCCTATTCAAAGGAACGATCTGCT
CCCTACGCCAGCCAAACGACTGACCCTTATGCTACAAGCAGACCAGTACA
AAGTCAGCAAGTTGCTTCTGCGCCGTACGCCACACAAAGTCAAGCATCGA
CTGCAACTTACGCTACGCAAAGTTACGCTGCCACTCCATCTTATGCTACA
CCTGCACGTACCGCATCCTATTCCTCTTATCCAGCTCAGACCCAATCAAG
CTCCGCATATGCAACTCAAAGTTATGCAAGCTCCTCATATGCCACTCAAA
GTTATGCAAGCTCTTCATATGCAACTCAAAGTTATGCAAGCTCTTATCCT
GCTCAAAGTCAATCGAGTGCCGCGCCTTACGCCACTCAAAGCCAAAACGG
TGGAGCTCGTTATGCAACTCAAAGTTATGCTCAATATGCAGCAGACTCAC
CGACAAAGAGTTTGCCTTATCAGCAATCCACTAGTGTTTCTTCTGCTTCC
TATGGCACCTCAGCTTCAGCATACAGTGCACAACCTGCGGCTGCTACTCC
TGGCTCTGCATCAGCTGGCTACAGTTACAGTTACCGCTAGATACCAGGTC
GAATGCGTGATTCAAATCCAAGCTCTTACGAAGGAAAATCGAGTCGTGTC
GAGTCGTGTCGTATGTCGTATGTCGGGTATTATCGGAAATTTATCGCGGA
ATATCAAGGCTTTACTTACGTTCGACgggaaaaagacaaaaaataacaac
agATAGTACAAATAAATTAAGGACGACggactttcttttttatttcgaac
TCGACGTATCGTTTTATCGCTTTTTTTACTCGCGTATCACTTTTCGTGGT
GCATATATGTGATTTATTACTGAAATACTTTTTACCTCTTATATGAAAAT
CATGTTCTAATTGTTATGTGTCTACGTagatgtcccaaaaaaagcggaaa
tatttttataaaaagtcgAAACTCATTATCTAAAATGAGCtaaataattg
aaataagagTACAATTCTttgttcaatcaatagatattcaat
Run BLAST on NCBI

transcript from alignment at sc0000439:133363..136568+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023040 ID=TCONS_00023040|Name=TCONS_00023040|organism=Clytia hemisphaerica|type=transcript|length=3206bp|location=Sequence derived from alignment at sc0000439:133363..136568+ (Clytia hemisphaerica)
CCTTGATAGACCTCCACCCAGAGGTGGCTTTCGTGGTAGAGGCCGTGGGC
GTGGGGATTATGGTGGCCGTGGTGGTTATGGTGGCCGAGGGGGTTATGGT
GGCCGAGGTGACTATGGTCGTGATCGATATACATAAGTTGACGGAGACTA
TGGTGGCCGAGGGGGTTATGGTGGCCGAGGTGACTATGGTCGTGATCGAT
ATACATAAGTTGACGGAGACTATGGTGGCCGAGGGGGTTATGGTGGCCGA
GGTGACTATGGTCGTGATCGATATACATAAGTTGACGGAGACTATGGTGG
CCGAGGTGACTATGGTGGCCGAGGAGACTATGGTGGCCGAGGTGGAGGAA
GAGGAAGAGGTGACTACAGCCGTGACACCTACCAGAGGGATCCTTACGCC
AGAGACCCGTATCTTCCGAGGGACCCTTATGCAAGAGATCCATACCCGAG
AGACCAACACAGAGATTCTTATGGAAGGGACCCTTACTCAAAAAGTGGAT
ACAGGGAACGCAGCCCGCCAAGAACATATGATTATTCAAGGTATACCTCC
CATCCCCATAAAAAACGTTAGGAAAAGTTACACCTATGCAGAAACCATGA
GATGGCTGCAAATATACCACTTTTTTATATATCTTTTTGAAGGGGGTACA
AATACTACGCAGGGCTGAATAATAGTTCAGTTGACTTGTATTATTCAATG
TTAATACTATGAAACCATTGCCTGTACTGAGAGTATTATTCTTCCTTATA
GAGCACCTGCATCTGACCCATATGCTGCTGAAAGAAGACGTTTAGCTTAC
GGGGACTCCACCCCTTCTAGTAGCTCTGCTCCGTATGCTACTCAAAGTAA
ACGGGCTGATCCTTATGCTAGTGGTCAAAGCCAACGAAGTGACCCCTATG
CCAGCCAGCGAAGTGACCCCTCTGCTAGCCAGAGAGGTGATCCCTATGCT
AGCCAAAGAAGTGATCCCTATGCTAGCCAAAGAAGTGACCCCTATTCAAA
GGAACGATCTGCTCCCTACGCCAGCCAAACGACTGACCCTTATGCTACAA
GCAGACCAGTACAAAGTCAGCAAGTTGCTTCTGCGCCGTACGCCACACAA
AGTNGGTGGTTATGGTGGCCGAGGAGACTATGGTGGCCGAGGTGACTATG
GTGGCCGAGGAGACTATGGTGGCCGAGGTGGAGGAAGAGGAAGAGGTGAC
TACGGCCGTGACACCTACCAGAGGGATCCTTACGCCAGAGACCCGTATCT
TCCGAGGGACCCTTATGCAAGAGATCCATACCCGAGAGACCAACACAGAG
ATTCTTATGGAAGGGACCCTTACTCAAAAAGTGGATACAGGGAACGCAGC
CCGCCAAGAACATATGATTATTCAAGGTATACCTCCCATCCCCATAAAAA
ACGTTAGGAAAAGTTACACCTATGCAGAAACCATGAGATGGCTGCAAATA
TACCACTTTTTTATATATCTTTTTGAAGGGGGTACAAATACTACGCAGGG
CTGAATAATAGTTCAGTTGACTTGTATTATTCAATGTTAATACTATGAAA
CCATTGCCTGTACTGAGAGTATTATTCTTCCTTATAGAGCACCTGCATCT
GACCCATATGCTGCTGAAAGAAGACGTTTAGCTTACGGGGACTCCACCCC
TTCTAGTAGCTCCGCTCCGTATGCTACTCAAAGTAAACGGGCTGATCCTT
ATGCTAGTGGTCAAAGCCAACGAAGTGACCCCTATGCCAGCCAGCGAAGT
GACCCCTCTGCTAGCCAGAGAGGTGATCCCTATGCTAGCCAAAGAAGTGA
TCCCTATGCTAGCCAAAGAAGTGACCCCTATTCAAAGGAACGATCTGCTC
CCTACGCCAGCCAAACGACTGACCCTTATGCTACAAGCAGACCAGTACAA
AGTCAGCAAGTTGCTTCTGCGCCGTACGCCACACAAAGTCAAGCATCGAC
TGCAACTTACGCTACGCAAAGTTACGCTGCCACTCCATCTTATGCTACAC
CTGCACGTACCGCATCCTATTCCTCTTATCCAGCTCAGACCCAATCAAGC
TCCGCATATGCAACTCAAAGTTATGCAAGCTCCTCATATGCCACTCAAAG
TTATGCAAGCTCTTCATATGCAACTCAAAGTTATGCAAGCTCTTATCCTG
CTCAAAGTCAATCGAGTGCCGCGCCTTACGCCACTCAAAGCCAAAACGGT
GGAGCTCGTTATGCAACTCAAAGTTATGCTCAATATGCAGCAGACTCACC
GACAAAGAGTTTGCCTTATCAGCAATCCACTAGTGTTTCTTCTGCTTCCT
ATGGCACCTCAGCTTCAGCATACAGTGCACAACCTGCGGCTGCTACTCCT
GGCTCTGCATCAGCTGGCTACAGTTACAGTTACCGCTAGATACCAGGTTT
GATCCTTTCTAAATTGTTTTCACAACTTTTTTTTATCGTCACAATTTTGT
TGCTATACGTTTTATTTCTTCTACAGTTTGAAGTTTTCGCTTTTTTGTTT
TGTccgagaaaaagtgaaaattgttCCACTTTTTTAGTAGTTGAATGAGA
ATGGGATATCCAGAACctctaattcatgatatgcaccactggagagtctt
ctgagaagttatttaaaattttccacccaatacgtcacttaaacaataga
atttttgaaaattcttggaagcCTCTTAAGTGGTGTATATCCATGAATTA
AATGTACTTTTTCAATGAGAAAGGGAGATCGATTCACTGAGGTTTTCAAT
CGTTTCTTTAGGTCGAATGCGTGATTCAAATCCAAGCTCTTACGAAGGAA
AATCGAGTCGTGTCGAGTCGTGTCGTATGTCGTATGTCGGGTATTATCGG
AAATTTATCGCGGAATATCAAGGCTTTACTTACGTTCGACgggaaaaaga
caaaaaataacaacagATAGTACAAATAAATTAAGGACGACggactttct
tttttatttcgaacTCGACGTATCGTTTTATCGCTTTTTTTACTCGCGTA
TCACTTTTCGTGGTGCATATATGTGATTTATTACTGAAATACTTTTTACC
TCTTATATGAAAATCATGTTCTAATTGTTATGTGTCTACGTagatgtccc
aaaaaaagcggaaatatttttataaaaagtcgAAACTCATTATCTAAAAT
GAGCtaaataattgaaataagagTACAATTCTttgttcaatcaatagata
ttcaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012945XLOC_012945Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023040-exon-sc0000439-1491911889:133363..133436TCONS_00023040-exon-sc0000439-1491911889:133363..133436Clytia hemisphaericaexon
TCONS_00023040-exon-sc0000439-1510915933:133363..133436TCONS_00023040-exon-sc0000439-1510915933:133363..133436Clytia hemisphaericaexon
TCONS_00023040-exon-sc0000439-1575043694:133363..133436TCONS_00023040-exon-sc0000439-1575043694:133363..133436Clytia hemisphaericaexon
TCONS_00023040-exon-sc0000439-1491911889:133689..133902TCONS_00023040-exon-sc0000439-1491911889:133689..133902Clytia hemisphaericaexon
TCONS_00023040-exon-sc0000439-1510915933:133689..133902TCONS_00023040-exon-sc0000439-1510915933:133689..133902Clytia hemisphaericaexon
TCONS_00023040-exon-sc0000439-1575043694:133689..133902TCONS_00023040-exon-sc0000439-1575043694:133689..133902Clytia hemisphaericaexon
TCONS_00023040-exon-sc0000439-1491911889:134950..135758TCONS_00023040-exon-sc0000439-1491911889:134950..135758Clytia hemisphaericaexon
TCONS_00023040-exon-sc0000439-1510915933:134950..135758TCONS_00023040-exon-sc0000439-1510915933:134950..135758Clytia hemisphaericaexon
TCONS_00023040-exon-sc0000439-1575043694:134950..135758TCONS_00023040-exon-sc0000439-1575043694:134950..135758Clytia hemisphaericaexon
TCONS_00023040-exon-sc0000439-1491911889:136124..136568TCONS_00023040-exon-sc0000439-1491911889:136124..136568Clytia hemisphaericaexon
TCONS_00023040-exon-sc0000439-1510915933:136124..136568TCONS_00023040-exon-sc0000439-1510915933:136124..136568Clytia hemisphaericaexon
TCONS_00023040-exon-sc0000439-1575043694:136124..136568TCONS_00023040-exon-sc0000439-1575043694:136124..136568Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000439supercontigsc0000439:133363..136568 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.253596	0	0	0	0	0	0	0.687105	0.630174	0.79066	3.30253e-10	0	0	0	0	0	0	0	0.000234219	0.529315	0	0.405202	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023040 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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