TCONS_00023017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023017
Unique NameTCONS_00023017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023017 ID=TCONS_00023017|Name=TCONS_00023017|organism=Clytia hemisphaerica|type=transcript|length=485bp
AAAAAAACGTTTGTCTAAGAAACTGTGATTCATTTGAAGCTATCAAAAGA
CTTCATGAAATCGCACATCGATTCTGAAGACTATTTTGGAGTCGACTTTT
ACACCAAAGAAATTGACTTCTCAAGAATATAGAGATGTTTATATGGATGT
GAAAGACAAAGTGAAGCTTTGTGATATTGCGGATGAATTCCCGAGAAAAG
CGCCGCCACATATGGACAGAATTCATCCATCGCCTGAAGGTTACGATATA
TTGGCTGAGATTCTCTTTCGGTGCATAAAGGAGTTCAAATATTAATGGGA
GAAATATTTCTAGGCTTAAAGCGGAAAGTTTGGTCTTTACATAAGAGCga
tattgtttcaattttaatttacgcaagctttttgatattaaattgacacg
gatgtggagcaagattggtcagaaagagaaaaagaaaaacatttttttgc
ttataggaaaagaaaaacatttttttgcttatatc
Run BLAST on NCBI

transcript from alignment at sc0000438:218872..219356

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023017 ID=TCONS_00023017|Name=TCONS_00023017|organism=Clytia hemisphaerica|type=transcript|length=485bp|location=Sequence derived from alignment at sc0000438:218872..219356 (Clytia hemisphaerica)
gatataagcaaaaaaatgtttttcttttcctataagcaaaaaaatgtttt
tctttttctctttctgaccaatcttgctccacatccgtgtcaatttaata
tcaaaaagcttgcgtaaattaaaattgaaacaatatcGCTCTTATGTAAA
GACCAAACTTTCCGCTTTAAGCCTAGAAATATTTCTCCCATTAATATTTG
AACTCCTTTATGCACCGAAAGAGAATCTCAGCCAATATATCGTAACCTTC
AGGCGATGGATGAATTCTGTCCATATGTGGCGGCGCTTTTCTCGGGAATT
CATCCGCAATATCACAAAGCTTCACTTTGTCTTTCACATCCATATAAACA
TCTCTATATTCTTGAGAAGTCAATTTCTTTGGTGTAAAAGTCGACTCCAA
AATAGTCTTCAGAATCGATGTGCGATTTCATGAAGTCTTTTGATAGCTTC
AAATGAATCACAGTTTCTTAGACAAACGTTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012942XLOC_012942Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023017-exon-sc0000438-1491911889:218872..219356TCONS_00023017-exon-sc0000438-1491911889:218872..219356Clytia hemisphaericaexon
TCONS_00023017-exon-sc0000438-1510915933:218872..219356TCONS_00023017-exon-sc0000438-1510915933:218872..219356Clytia hemisphaericaexon
TCONS_00023017-exon-sc0000438-1575043694:218872..219356TCONS_00023017-exon-sc0000438-1575043694:218872..219356Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000438supercontigsc0000438:218872..219356 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.277044	0.734261	0.355179	0	0.342588	0.136981	0	1.12858	0	0	0.137601	0.0860515	0.44423	0.888251	0.551811	0.686034	0.686956	0.82597	0.546574	0.973725	1.75769	0.395385	2.04701	0.778018	0.751178	2.24779	0.822629	0.460051	0.760313	0.436919
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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