TCONS_00023011 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023011
Unique NameTCONS_00023011
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length586

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023011 ID=TCONS_00023011|Name=TCONS_00023011|organism=Clytia hemisphaerica|type=transcript|length=586bp
TACATCCAACAATgatattttcttgttttcaaattgGAGCTCACAGAAAG
TAGATTCAAGTTCCTTTTCACAATAAAGAGAGCAAGAGAGATCATTTCTA
GACTTGGATTTTAGATCATTGGAGATAAAGAGAGCGGTACCACCAGCACT
AGATTTTGTGTTAGTAAAAAGTGACTTATAACCATCAATATCAAGTTTAT
GTGGAATAGAAGAATCGGTAAGTCTAGTTTCCGAGATTCCTAAGACTTTG
AAATTGTGATTTAAAGAGTTTAAGAGATTGTTGTACAtatcaaaatgttt
tgataaagAACTGATTAAGATGAAGAAATGAGAGGTTAGAAGATGTGTTA
GAAAAAGCAGAGTTGAAGTCGCTACAATCAAAATACCTACAATCAACAGT
GTTCAAATTATATTCTGTGTTTGTTTCTCGAATTTCTTCGATCGTGGTTA
AATCAGAGAATGAGGGGTGGAAATAGTTGTACCtgaaacttttttcatca
aGCTCATAGCAAATGCTAAAAGGGAAAAGATCGCAGTTGCAGTTAATGCA
TAATCCGACTTGTGGATAGTTTATTGAGAATGGGAG
Run BLAST on NCBI

transcript from alignment at sc0000438:115171..115756

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023011 ID=TCONS_00023011|Name=TCONS_00023011|organism=Clytia hemisphaerica|type=transcript|length=586bp|location=Sequence derived from alignment at sc0000438:115171..115756 (Clytia hemisphaerica)
CTCCCATTCTCAATAAACTATCCACAAGTCGGATTATGCATTAACTGCAA
CTGCGATCTTTTCCCTTTTAGCATTTGCTATGAGCttgatgaaaaaagtt
tcaGGTACAACTATTTCCACCCCTCATTCTCTGATTTAACCACGATCGAA
GAAATTCGAGAAACAAACACAGAATATAATTTGAACACTGTTGATTGTAG
GTATTTTGATTGTAGCGACTTCAACTCTGCTTTTTCTAACACATCTTCTA
ACCTCTCATTTCTTCATCTTAATCAGTTctttatcaaaacattttgataT
GTACAACAATCTCTTAAACTCTTTAAATCACAATTTCAAAGTCTTAGGAA
TCTCGGAAACTAGACTTACCGATTCTTCTATTCCACATAAACTTGATATT
GATGGTTATAAGTCACTTTTTACTAACACAAAATCTAGTGCTGGTGGTAC
CGCTCTCTTTATCTCCAATGATCTAAAATCCAAGTCTAGAAATGATCTCT
CTTGCTCTCTTTATTGTGAAAAGGAACTTGAATCTACTTTCTGTGAGCTC
caatttgaaaacaagaaaatatcATTGTTGGATGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012936XLOC_012936Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023011-exon-sc0000438-1491911889:115171..115756TCONS_00023011-exon-sc0000438-1491911889:115171..115756Clytia hemisphaericaexon
TCONS_00023011-exon-sc0000438-1510915933:115171..115756TCONS_00023011-exon-sc0000438-1510915933:115171..115756Clytia hemisphaericaexon
TCONS_00023011-exon-sc0000438-1575043694:115171..115756TCONS_00023011-exon-sc0000438-1575043694:115171..115756Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000438supercontigsc0000438:115171..115756 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.31748	0.642373	0.852408	1.04243	0.380719	0.802265	1.20987	2.49187	0.317203	0.589361	0	0.940105	0.813625	0.584971	0.160308	0.229381	0.211934	0.289634	0	0.209361	0.181973	0.13314	0.215799	0.0980962	1.21244	2.16415	0.129037	0	0.208899	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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