TCONS_00023010 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023010
Unique NameTCONS_00023010
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023010 ID=TCONS_00023010|Name=TCONS_00023010|organism=Clytia hemisphaerica|type=transcript|length=330bp
ctcgCACGTTGAATGTTTATTAAAGCGCACAATCACACGTTGTGCGTTAT
CTCTGATAGGGCCGATTCGATGCGTTTTGTCGATTGTcgacttaaattca
ttttcttcGATTCCCAGTTCTTCGATAGAGTCTTTGACTTGCTTCATTCA
CGATTCATTAGTTTCTCTACGATTGAGCGAGATACCTTCTAGAACGAGGC
AATTCTTCGTGAATACTGTTGTTGACGTTCAACTTCATCGGACAACTTTT
GGCCCACAGTACATGCAACAGCGTTACGATCTTTTAGGATTGTTATTTCT
TTGTGTAGAGCAGGAACTGTCGACTTTTCA
Run BLAST on NCBI

transcript from alignment at sc0000438:114303..114632

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023010 ID=TCONS_00023010|Name=TCONS_00023010|organism=Clytia hemisphaerica|type=transcript|length=330bp|location=Sequence derived from alignment at sc0000438:114303..114632 (Clytia hemisphaerica)
TGAAAAGTCGACAGTTCCTGCTCTACACAAAGAAATAACAATCCTAAAAG
ATCGTAACGCTGTTGCATGTACTGTGGGCCAAAAGTTGTCCGATGAAGTT
GAACGTCAACAACAGTATTCACGAAGAATTGCCTCGTTCTAGAAGGTATC
TCGCTCAATCGTAGAGAAACTAATGAATCGTGAATGAAGCAAGTCAAAGA
CTCTATCGAAGAACTGGGAATCgaagaaaatgaatttaagtcgACAATCG
ACAAAACGCATCGAATCGGCCCTATCAGAGATAACGCACAACGTGTGATT
GTGCGCTTTAATAAACATTCAACGTGcgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012935XLOC_012935Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023010-exon-sc0000438-1491911889:114303..114632TCONS_00023010-exon-sc0000438-1491911889:114303..114632Clytia hemisphaericaexon
TCONS_00023010-exon-sc0000438-1510915933:114303..114632TCONS_00023010-exon-sc0000438-1510915933:114303..114632Clytia hemisphaericaexon
TCONS_00023010-exon-sc0000438-1575043694:114303..114632TCONS_00023010-exon-sc0000438-1575043694:114303..114632Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000438supercontigsc0000438:114303..114632 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17278	2.00138	1.65985	1.62391	3.16312	0.312443	5.27729	3.17606	2.96484	3.67243	0.891139	3.12426	2.14495	3.24007	0.166486	0.535995	0.220101	0	0.311673	0.326144	0.283478	0.414812	0.336172	0.305629	11.6473	7.02358	0	0	0.325424	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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