TCONS_00023004 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023004
Unique NameTCONS_00023004
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length670

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023004 ID=TCONS_00023004|Name=TCONS_00023004|organism=Clytia hemisphaerica|type=transcript|length=670bp
AAGCGGACATTCCTCCTGCCAGTGTTGAAGTCGCAAATGGCAGCTTTGAA
AAGGCAATCGATGTTGTTAACCTTCCAATTACTGTTGGAGGCATGACCTT
TTTCCACCCTACTCACGTTTTTAGAAATTTGCCCTTTCCTCTTTTGCTTG
GTGATGATTTTTTAGAGGCCAACCAAGGCCAATTAGTATTTAATGGCTCC
GCAGCTGAGCTTACCTTGATTGATAGTATTGAGAATAATATAAATTTAAT
TGACGAAAAAGGACGTGTCATTGAAACCAGTTTTTCAGAACGACAGACTT
CTGATGAAAAAGTATTCCATCACCAAACTCAAAATATAGAGTTCCCTCCT
AAAGCACTTCACAAGGTTAATCTTGCCCCTTGTGAAGGAatgattgatga
ctttttgtactTAGTTGAAAACAGCCCCCAGGGAGAAGACCTCCTGGTTA
TGATTCCCCAGCTTTCTGCGTTTAGTNTAGTTGAAAACAGCCCCCAAAGA
GAAGACCTCCTAGTTATGATTCCCCAGCTTTCTGCGTTTAGTGAAgggaa
acttgaaatttttgtaGCGAACCCCATGGATAAGAGCATTAACACCAGTC
TAACGTTAATAAGTTCCCCTGTAGACACCATAGAGGAGCCGATTATCAAA
TCCCCTAAGACCCAGCCATG
Run BLAST on NCBI

protein sequence of TCONS_00023004-protein

>TCONS_00023004-protein ID=TCONS_00023004-protein|Name=TCONS_00023004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
ADIPPASVEVANGSFEKAIDVVNLPITVGGMTFFHPTHVFRNLPFPLLLG
DDFLEANQGQLVFNGSAAELTLIDSIENNINLIDEKGRVIETSFSERQTS
DEKVFHHQTQNIEFPPKALHKVNLAPCEGMIDDFLYLVENSPQGEDLLVM
IPQLSAFSXVENSPQREDLLVMIPQLSAFSEGKLEIFVANPMDKSINTSL
TLISSPVDTIEEPIIKSPKTQP
Run BLAST on NCBI

transcript from alignment at sc0000438:72047..72716

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023004 ID=TCONS_00023004|Name=TCONS_00023004|organism=Clytia hemisphaerica|type=transcript|length=670bp|location=Sequence derived from alignment at sc0000438:72047..72716 (Clytia hemisphaerica)
CATGGCTGGGTCTTAGGGGATTTGATAATCGGCTCCTCTATGGTGTCTAC
AGGGGAACTTATTAACGTTAGACTGGTGTTAATGCTCTTATCCATGGGGT
TCGCtacaaaaatttcaagtttcccTTCACTAAACGCAGAAAGCTGGGGA
ATCATAACTAGGAGGTCTTCTCTTTGGGGGCTGTTTTCAACTANACTAAA
CGCAGAAAGCTGGGGAATCATAACCAGGAGGTCTTCTCCCTGGGGGCTGT
TTTCAACTAagtacaaaaagtcatcaatcatTCCTTCACAAGGGGCAAGA
TTAACCTTGTGAAGTGCTTTAGGAGGGAACTCTATATTTTGAGTTTGGTG
ATGGAATACTTTTTCATCAGAAGTCTGTCGTTCTGAAAAACTGGTTTCAA
TGACACGTCCTTTTTCGTCAATTAAATTTATATTATTCTCAATACTATCA
ATCAAGGTAAGCTCAGCTGCGGAGCCATTAAATACTAATTGGCCTTGGTT
GGCCTCTAAAAAATCATCACCAAGCAAAAGAGGAAAGGGCAAATTTCTAA
AAACGTGAGTAGGGTGGAAAAAGGTCATGCCTCCAACAGTAATTGGAAGG
TTAACAACATCGATTGCCTTTTCAAAGCTGCCATTTGCGACTTCAACACT
GGCAGGAGGAATGTCCGCTT

Coding sequence (CDS) from alignment at sc0000438:72047..72716

>TCONS_00023004 ID=TCONS_00023004|Name=TCONS_00023004|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at sc0000438:72047..72716 (Clytia hemisphaerica)
TGGCTGGGTCTTAGGGGATTTGATAATCGGCTCCTCTATGGTGTCTACAG
GGGAACTTATTAACGTTAGACTGGTGTTAATGCTCTTATCCATGGGGTTC
GCtacaaaaatttcaagtttcccTTCACTAAACGCAGAAAGCTGGGGAAT
CATAACTAGGAGGTCTTCTCTTTGGGGGCTGTTTTCAACTANACTAAACG
CAGAAAGCTGGGGAATCATAACCAGGAGGTCTTCTCCCTGGGGGCTGTTT
TCAACTAagtacaaaaagtcatcaatcatTCCTTCACAAGGGGCAAGATT
AACCTTGTGAAGTGCTTTAGGAGGGAACTCTATATTTTGAGTTTGGTGAT
GGAATACTTTTTCATCAGAAGTCTGTCGTTCTGAAAAACTGGTTTCAATG
ACACGTCCTTTTTCGTCAATTAAATTTATATTATTCTCAATACTATCAAT
CAAGGTAAGCTCAGCTGCGGAGCCATTAAATACTAATTGGCCTTGGTTGG
CCTCTAAAAAATCATCACCAAGCAAAAGAGGAAAGGGCAAATTTCTAAAA
ACGTGAGTAGGGTGGAAAAAGGTCATGCCTCCAACAGTAATTGGAAGGTT
AACAACATCGATTGCCTTTTCAAAGCTGCCATTTGCGACTTCAACACTGG
CAGGAGGAATGTCCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012929XLOC_012929Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023004-proteinTCONS_00023004-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023004-exon-sc0000438-1491911889:72047..72716TCONS_00023004-exon-sc0000438-1491911889:72047..72716Clytia hemisphaericaexon
TCONS_00023004-exon-sc0000438-1510915933:72047..72716TCONS_00023004-exon-sc0000438-1510915933:72047..72716Clytia hemisphaericaexon
TCONS_00023004-exon-sc0000438-1575043694:72047..72716TCONS_00023004-exon-sc0000438-1575043694:72047..72716Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000438supercontigsc0000438:72047..72716 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.153916	0.525325	0.290761	0.255747	0.934042	0.738093	0.989419	1.57468	0.129702	1.36559	1.09157	0.512538	0.786173	1.06307	0.262197	0.656546	0.265996	0.829006	0.600829	0.342426	1.26085	0.979922	0.297593	0.401109	1.98304	1.25362	0.21105	0.900953	0.854176	0.435135
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023004 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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