TCONS_00022999 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022999
Unique NameTCONS_00022999
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1004

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022999 ID=TCONS_00022999|Name=TCONS_00022999|organism=Clytia hemisphaerica|type=transcript|length=1004bp
TTCTGAGTTGCGTTACTAAGTGATGTCTCGTTGCTACAAACCATAAAACG
AAAACTACAAAGAAAAATGGCAAGGTAGTGGACGAGCCAGGCAAACCATC
AAACAATACTGAGCGTGCTCGACAGAACGAAGAAAATGCGAAATCTAATG
AAGAAAGAAAACATCAAAGTGATAAAAACAACCAAGCAAACAATAAACAA
TCATTATCCAATGATAAAATTCtacaaaaaattttgagagGTGAGCACGG
GAAACCAGTGACGTCATACGCTCATGATGAAAATGCAGACCGGAATTTTG
AGAATCAGACCATTAAATTGGATCCTTCGATAATACAGGGACGAATACCA
ATGGATGACAAAGTCCCAGACCCTGAGCGTTTAGATGAAGATAATTCTGT
TATGGGGATAGATGGAAATCCGGCAATCGAGACCAAACTAAATGAGACAA
GttcaaacaacaaaaccacAAGTAAACATCCATCCGAAACGGAAAACATG
AGTACAGACGAGAATCGAGAACATAAAATCAAACCGAAAATTGCAGATCA
TAATCTTTCAAATCATAACAAGactacaatcagccacaatcaaaCGAAAC
CGTATTCTCAAAACGGGACAAATATGACGAAACTGGATTCAAATATCGGA
CAAAATCATGCAAAACTTGGTAAAGAAATCGGGAAAAATGTTACTAAGAT
GGAATCTGATTTGTTGCCCGATAAAAGGAACGCGACGGACGTCGGCTCAG
CTTTGTCGACGAATACGACGGTCTTTAACAAGAAAAGCACAACAAAAACG
GACGACGGAAACAGTGACAACGACGAGGATAAGAAAGTTGAGAAACCAAA
AAAAAGGATTCTGGCATTTGGAGATTCATTGACCAAAGGAACgtacaata
aaaatgaaagcgTTCATCCATACTCACGTCATTTGGTCGAACTTTTAAAA
GATTCCGACCCGAATACCAACTATGAGATTTTCACTGAGGGTGTAAACAG
TGAA
Run BLAST on NCBI

protein sequence of TCONS_00022999-protein

>TCONS_00022999-protein ID=TCONS_00022999-protein|Name=TCONS_00022999-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MDDKVPDPERLDEDNSVMGIDGNPAIETKLNETSSNNKTTSKHPSETENM
STDENREHKIKPKIADHNLSNHNKTTISHNQTKPYSQNGTNMTKLDSNIG
QNHAKLGKEIGKNVTKMESDLLPDKRNATDVGSALSTNTTVFNKKSTTKT
DDGNSDNDEDKKVEKPKKRILAFGDSLTKGTYNKNESVHPYSRHLVELLK
DSDPNTNYEIFTEGVNSE
Run BLAST on NCBI

transcript from alignment at sc0000438:219438..222146-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022999 ID=TCONS_00022999|Name=TCONS_00022999|organism=Clytia hemisphaerica|type=transcript|length=2709bp|location=Sequence derived from alignment at sc0000438:219438..222146- (Clytia hemisphaerica)
TTCTGAGTTGCGTTACTAAGTGATGTCTCGTTGCTACAAACCATAAAACG
AAAACTACAAAGAAAAATGGCAAGGTAATCGAGAAAAATTTATTTTATAT
CGGTGTAATACTTACAGAATTTGTCATTTCATTTCAACAATGAGCCGAAT
CTTTCAATTCGCTTACACAGCATTTTTAAGCAAAAAGAAAGAGCAACTTT
TTCTTCCCTTTTGACGCCACACGAGTACAAACTTTGGAGAACTAAAAGTA
AGTATATTCGTCGGGTTCCTGTCGGGATAGCCGGGTGTGAGGGAGTCTAT
CCACTTTTCTATTTGCGCTAAAGCTTAGAGATAAAATCCTGAGGTAGAAC
ACCACACCTAGTCTCATCTCGCAGTAACTTACCGCCTAAATCAGATTACC
CANGTAGCCGGGTGTGAGGAAGTCTATCCACTTTTCTATTTGCACTAAAG
CTTAGAGATAAAATCCTGAGGTATAACACCACACCTTGTCTCATCTCGCA
GTAACTTACCGCCTAAATCAGATTACCCAATATATGCTTCTCATTCGCTG
AGTTCGCAGTGACTGGAGATCGAATCCGCAGCTTTTGAATTGTAAGGCGA
ATGCTAAACCGACTGAGCTCCCCGACCACGAGAAACTCTATTGTTAATTA
TGTTTTGTCAGCAAATATTTAAAATACGTCGAATACGTTTGACATACTTT
TATGGCAGTCAACTTTAATGGTTCCATTTTCAGGTAGTGGACGAGCCAGG
CAAACCATCAAACAATACTGAGCGTGCTCGACAGAACGAAGAAAATGCGA
AATCTAATGAAGAAAGAAAACATCAAAGTGATAAAAACAACCAAGCAAAC
AATAAACAATCATTATCCAATGATAAAATTCTACAAAAAATTTTGAGAGG
TAAATAGAGTCGATATTTTATGTGGATAACCCAGTAATTTAGGACTTCTA
GGCAGTCTTTCGATTATTTTGACGGGGTCCACGGTTATTTGACGGGGTCC
ACGGCCAACTGGCTCGGTTATCTTTGAACTGAACGGAACATTGGAAGGAA
CGGGGATTCGAACCGCGAATCCCTGGTTTGAGACGCTAACACCATTGACC
ACTTGGCCATCGCAATGGAAATGTAATGGAAATGTTTAACAATGGAAATG
TTCTAAACTCAAACCCATTCTCTGTGTTCACTCTCCTTTGTCAGTGAAAA
AACTGTAGAAGGTTGCTGATTTGAGGGAAAACAACGGCGATGTTCTAAAC
TCAATCCCAGTTCCTTTTTCATTCTGATAGCCATGAAAATCAAAACTTTT
CACTTTTTTCAAAAGCTTTAAGTATAGTGCTTTCATTTAAACATAATCTG
TTCCATTTTTTTCCCCTGAAAAATGGTGTACGGTTTGTTCAAAATCCAAC
CTTGATCAACTTTTTAGGTGAGCACGGGAAACCAGTGACGTCATACGCTC
ATGATGAAAATGCAGACCGGAATTTTGAGAATCAGACCATTAAATTGGAT
CCTTCGATAATACAGGGACGAATACCAATGGATGACAAAGTAATTTTGAG
TTATTCATGATATGCACCATTGTAATGTCTTCCATGGACACAACAGCTGA
TTGGTTGAAAGTGACGTATTTTGAATGATTTTACGTCACTTACAACCAAT
CAGCTGTTGGGTTCGTGATATAATGTCAAAAGATATTGCAATGGTGCATA
TCATGAATTGATTTGATTCCTTAGTTGCATGGCCTGGTTGATTTAAGCCC
ACAAACTCTGGTTTGAATAAAGAACTCTTTTCCTTTGTCTTATCCGCAAA
CTATTATTCAAGGGACACGCACAGCCCACGTGTTAAACTCTTTCAGTATA
GCGAGAAACTTAAATTTATGGACTTTTCAAAGGCACGGTACGTTAAATTT
TAATGTGATTAAGAAGATTCCGGCTAAAGTAAAATAGGTCATATTTGAGT
TCGTTGGAAAGCTCTTTTCAATAACTTTCTATTTAATGTATACCACTTTT
TCAAATGAAATTTTCAATCGAAATTCCTTGTATCTGAAAGAACCTTTTAA
CAATTGGCTGTTTTTAGGTCCCAGACCCTGAGCGTTTAGATGAAGATAAT
TCTGTTATGGGGATAGATGGAAATCCGGCAATCGAGACCAAACTAAATGA
GACAAGTTCAAACAACAAAACCACAAGTAAACATCCATCCGAAACGGAAA
ACATGAGTACAGACGAGAATCGAGAACATAAAATCAAACCGAAAATTGCA
GATCATAATCTTTCAAATCATAACAAGACTACAATCAGCCACAATCAAAC
GAAACCGTATTCTCAAAACGGGACAAATATGACGAAACTGGATTCAAATA
TCGGACAAAATCATGCAAAACTTGGTAAAGAAATCGGGAAAAATGTTACT
AAGATGGAATCTGATTTGTTGCCCGATAAAAGGAACGCGACGGACGTCGG
CTCAGCTTTGTCGACGAATACGACGGTCTTTAACAAGAAAAGCACAACAA
AAACGGACGACGGAAACAGTGACAACGACGAGGATAAGAAAGTTGAGAAA
CCAAAAAAAAGGATTCTGGCATTTGGAGATTCATTGACCAAAGGAACGTA
CAATAAAAATGAAAGCGTTCATCCATACTCACGTCATTTGGTCGAACTTT
TAAAAGATTCCGACCCGAATACCAACTATGAGATTTTCACTGAGGGTGTA
AACAGTGAA

Coding sequence (CDS) from alignment at sc0000438:219438..222146-

>TCONS_00022999 ID=TCONS_00022999|Name=TCONS_00022999|organism=Clytia hemisphaerica|type=CDS|length=1308bp|location=Sequence derived from alignment at sc0000438:219438..222146- (Clytia hemisphaerica)
GTCCCAGACCCTGAGCGTTTAGATGAAGATAATTCTGTTATGGGGATAGA
TGGAAATCCGGCAATCGAGACCAAACTAAATGAGACAAGTTCAAACAACA
AAACCACAAGTAAACATCCATCCGAAACGGAAAACATGAGTACAGACGAG
AATCGAGAACATAAAATCAAACCGAAAATTGCAGATCATAATCTTTCAAA
TCATAACAAGACTACAATCAGCCACAATCAAACGAAACCGTATTCTCAAA
ACGGGACAAATATGACGAAACTGGATTCAAATATCGGACAAAATCATGCA
AAACTTGGTAAAGAAATCGGGAAAAATGTTACTAAGATGGAATCTGATTT
GTTGCCCGATAAAAGGAACGCGACGGACGTCGGCTCAGCTTTGTCGACGA
ATACGACGGTCTTTAACAAGAAAAGCACAACAAAAACGGACGACGGAAAC
AGTGACAACGACGAGGATAAGAAAGTTGAGAAACCAAAAAAAAGGATTCT
GGCATTTGGAGATTCATTGACCAAAGGAACGTACAATAAAAATGAAAGCG
TTCATCCATACTCACGTCATTTGGTCGAACTTTTAAAAGATTCCGACCCG
AATACCAACTATGAGATTTTCACTGAGGGTGTAAACAGTGAAATGGATGA
CAAAGTCCCAGACCCTGAGCGTTTAGATGAAGATAATTCTGTTATGGGGA
TAGATGGAAATCCGGCAATCGAGACCAAACTAAATGAGACAAGTTCAAAC
AACAAAACCACAAGTAAACATCCATCCGAAACGGAAAACATGAGTACAGA
CGAGAATCGAGAACATAAAATCAAACCGAAAATTGCAGATCATAATCTTT
CAAATCATAACAAGACTACAATCAGCCACAATCAAACGAAACCGTATTCT
CAAAACGGGACAAATATGACGAAACTGGATTCAAATATCGGACAAAATCA
TGCAAAACTTGGTAAAGAAATCGGGAAAAATGTTACTAAGATGGAATCTG
ATTTGTTGCCCGATAAAAGGAACGCGACGGACGTCGGCTCAGCTTTGTCG
ACGAATACGACGGTCTTTAACAAGAAAAGCACAACAAAAACGGACGACGG
AAACAGTGACAACGACGAGGATAAGAAAGTTGAGAAACCAAAAAAAAGGA
TTCTGGCATTTGGAGATTCATTGACCAAAGGAACGTACAATAAAAATGAA
AGCGTTCATCCATACTCACGTCATTTGGTCGAACTTTTAAAAGATTCCGA
CCCGAATACCAACTATGAGATTTTCACTGAGGGTGTAAACAGTGAAATGG
ATGACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012924XLOC_012924Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022999-proteinTCONS_00022999-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022999-exon-sc0000438-1575043694:222073..222146TCONS_00022999-exon-sc0000438-1575043694:222073..222146Clytia hemisphaericaexon
TCONS_00022999-exon-sc0000438-1575043694:221248..221413TCONS_00022999-exon-sc0000438-1575043694:221248..221413Clytia hemisphaericaexon
TCONS_00022999-exon-sc0000438-1575043694:220608..220729TCONS_00022999-exon-sc0000438-1575043694:220608..220729Clytia hemisphaericaexon
TCONS_00022999-exon-sc0000438-1575043694:219438..220079TCONS_00022999-exon-sc0000438-1575043694:219438..220079Clytia hemisphaericaexon
TCONS_00022999-exon-sc0000438-1510915933:222073..222146TCONS_00022999-exon-sc0000438-1510915933:222073..222146Clytia hemisphaericaexon
TCONS_00022999-exon-sc0000438-1510915933:221248..221413TCONS_00022999-exon-sc0000438-1510915933:221248..221413Clytia hemisphaericaexon
TCONS_00022999-exon-sc0000438-1510915933:220608..220729TCONS_00022999-exon-sc0000438-1510915933:220608..220729Clytia hemisphaericaexon
TCONS_00022999-exon-sc0000438-1510915933:219438..220079TCONS_00022999-exon-sc0000438-1510915933:219438..220079Clytia hemisphaericaexon
TCONS_00022999-exon-sc0000438-1491911889:222073..222146TCONS_00022999-exon-sc0000438-1491911889:222073..222146Clytia hemisphaericaexon
TCONS_00022999-exon-sc0000438-1491911889:221248..221413TCONS_00022999-exon-sc0000438-1491911889:221248..221413Clytia hemisphaericaexon
TCONS_00022999-exon-sc0000438-1491911889:220608..220729TCONS_00022999-exon-sc0000438-1491911889:220608..220729Clytia hemisphaericaexon
TCONS_00022999-exon-sc0000438-1491911889:219438..220079TCONS_00022999-exon-sc0000438-1491911889:219438..220079Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000438supercontigsc0000438:219438..222146 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.130552	0	0	0.274352	0.219382	0.476156	0.713833	0.112008	0.139315	0.277432	0.329785	0.272712	0.49227	0.434223	1.13902	1.07887	0.890388	0.511258	1.0063	1.20693	1.16722	1.02214	1.31142	0.683924	1.1138	0.579147	0.628375	0.87164	0.740242
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022999 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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