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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022997 ID=TCONS_00022997|Name=TCONS_00022997|organism=Clytia hemisphaerica|type=transcript|length=495bp
GCCTAGAAAATCTAAAAAGCAATATAGAGGACTTTTCATTCATTCCATTT
CGTTTTCATTCAACTACAAGAACTTtctaacttttttcaaaattttcaaa
ttcaaatttattaGATATGTGGTAAAGGATGAATCAGGCAGAAACAAGAC
ATTTTTCGGAGGTGACCAGTTGACCGAGGAAAGGGGAAGATCAGTACAGA
ATGCTCGGGCAGATGGAAAGACACCTGAAGAACGTGTTACTACAAAATTT
GAAGATTGGCGTGCAATAAGAACAGCATATGATTCTGCtctcaaaatgtt
caaaaataaagatgCAATCGGTGATGCTGGAACCTATCTACCCAATGCGC
TAAAGACTGGAAACAAGAACGCACTAAGAAAAGTAGAGGACAAATTCCAA
GAAGTCAAGGAGTTCTTTGACATCGAAACTAAGGCTTTATTGGTTTCTGG
ATTTCTTGAACAAGAAGGTGCAGAAAGCATTGAAGAGTATGAACC Run BLAST on NCBI protein sequence of TCONS_00022997-protein >TCONS_00022997-protein ID=TCONS_00022997-protein|Name=TCONS_00022997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
PRKSKKQYRGLFIHSISFSFNYKNFLTFFKIFKFKFIRYVVKDESGRNKT
FFGGDQLTEERGRSVQNARADGKTPEERVTTKFEDWRAIRTAYDSALKMF
KNKDAIGDAGTYLPNALKTGNKNALRKVEDKFQEVKEFFDIETKALLVSG
FLEQEGAESIEEYE Run BLAST on NCBI transcript from alignment at sc0000438:165190..166529- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022997 ID=TCONS_00022997|Name=TCONS_00022997|organism=Clytia hemisphaerica|type=transcript|length=1340bp|location=Sequence derived from alignment at sc0000438:165190..166529- (Clytia hemisphaerica)
GCCTAGAAAATCTAAAAAGCAATATAGAGGACTTTTCATTCATTCCATTT
CGTTTTCATTCAACTACAAGAACTTTCTAACTTTTTTCAAAATTTTCAAA
TTCAAATTTATTAGATATGTGGTAAAGGATGAATCAGGCAGAAACAAGAC
ATTTTTCGGAGGTGACCAGTTGACCGAGGAAAGGGGAAGATCAGTACAGA
ATGCTCGGGCAGATGGAAAGACACCTGAAGAACGTGTTACTACAAAATTT
GAAGATTGGCGTGCAATAAGAACAGCATATGATGTAAACATTTATTCTCA
AAGGGGATGTAAGGGCAAAATTCTACTATAATTTTTTTCCAATTTATGGA
AACTTTATACAAATTGACTATACCCGCTTTAAAGTGATATCGCTTTTAAG
AGCTTTTCAATGGTATAAGTGGTTTTGGGCTTTAGTGACAAATAATTTTT
GTTAAATTTCAGGTCTCAAAGTCTTTTGACCATAAAAAAATAGCTGGACC
TAATTCCCTTACTTCCTCTCAAAAAAGTTTCTAAATACATTTTCTTCTTT
CGAATGAGCAAAAAAAAATTCCACTCCAGAAATTGTTGTCACAGGTCCTA
AAGAATGGCCCCCTACTAGTAAAAATTCTATTTTGAAATAGATACTTACA
ATGTTTTTCTTTTTATAGGCATAACACTTATAAGCATATCCAGAGGCTCA
AATTTTGGAAAAACCTAATCATTGTCTAAGCATATGCTGAGCCTCAAATT
CATCTTTCGCTTACCAGACCTCTTATATTGAACGCGGTCTCGTATTTTTA
CGTGTAAAATATGAAATACGGCATATATTGCTTCTCTCTTAGCCAATCAG
ATTGCTTATATTTTTCAAGTTGACGAAAAAGGAAAATAATTTAATATCTT
TTAAACAGAATTATATATTTTTCACTACTTTCAGTCTGCTCTCAAAATGT
TCAAAAATAAAGATGCAATCGGTGATGCTGGAACCTATCTACCCAATGCG
CTAAAGACTGGAAACAAGAACGCACTAAGAAAAGTAGAGGACAAATTCCA
AGAAGTCAAGGAGTTCTTTGACATCGAAACTAAGGCTTTATTGGTTTCTG
GATTTCTTGAACAAGAAGGTATTTAAAACAAACTTGACAAAAGTCTTATG
CTAGAAATTAAACACATTTAGAAAAAAATCTAAAACTTAACAAAGGGCCA
TAAGCACATTTATTCAGACTTTGAGCTCATATTAGGCGTTGAGGTCGACG
AAAGTCGTCGGTCGCAGGCCTCAAATAAACTCTCTGTCCAATGTTTTTTG
AATTCATTTCAGGTGCAGAAAGCATTGAAGAGTATGAACC Coding sequence (CDS) from alignment at sc0000438:165190..166529- >TCONS_00022997 ID=TCONS_00022997|Name=TCONS_00022997|organism=Clytia hemisphaerica|type=CDS|length=1476bp|location=Sequence derived from alignment at sc0000438:165190..166529- (Clytia hemisphaerica)
GTGCAGAAAGCATTGAAGAGTATGAATCTGCTCTCAAAATGTTCAAAAAT
AAAGATGCAATCGGTGATGCTGGAACCTATCTACCCAATGCGCTAAAGAC
TGGAAACAAGAACGCACTAAGAAAAGTAGAGGACAAATTCCAAGAAGTCA
AGGAGTTCTTTGACATCGAAACTAAGGCTTTATTGGTTTCTGGATTTCTT
GAACAAGAAGCCTAGAAAATCTAAAAAGCAATATAGAGGACTTTTCATTC
ATTCCATTTCGTTTTCATTCAACTACAAGAACTTTCTAACTTTTTTCAAA
ATTTTCAAATTCAAATTTATTAGATATGTGGTAAAGGATGAATCAGGCAG
AAACAAGACATTTTTCGGAGGTGACCAGTTGACCGAGGAAAGGGGAAGAT
CAGTACAGAATGCTCGGGCAGATGGAAAGACACCTGAAGAACGTGTTACT
ACAAAATTTGAAGATTGGCGTGCAATAAGAACAGCATATGATGTGCAGAA
AGCATTGAAGAGTATGAATCTGCTCTCAAAATGTTCAAAAATAAAGATGC
AATCGGTGATGCTGGAACCTATCTACCCAATGCGCTAAAGACTGGAAACA
AGAACGCACTAAGAAAAGTAGAGGACAAATTCCAAGAAGTCAAGGAGTTC
TTTGACATCGAAACTAAGGCTTTATTGGTTTCTGGATTTCTTGAACAAGA
AGCCTAGAAAATCTAAAAAGCAATATAGAGGACTTTTCATTCATTCCATT
TCGTTTTCATTCAACTACAAGAACTTTCTAACTTTTTTCAAAATTTTCAA
ATTCAAATTTATTAGATATGTGGTAAAGGATGAATCAGGCAGAAACAAGA
CATTTTTCGGAGGTGACCAGTTGACCGAGGAAAGGGGAAGATCAGTACAG
AATGCTCGGGCAGATGGAAAGACACCTGAAGAACGTGTTACTACAAAATT
TGAAGATTGGCGTGCAATAAGAACAGCATATGATGTGCAGAAAGCATTGA
AGAGTATGAATCTGCTCTCAAAATGTTCAAAAATAAAGATGCAATCGGTG
ATGCTGGAACCTATCTACCCAATGCGCTAAAGACTGGAAACAAGAACGCA
CTAAGAAAAGTAGAGGACAAATTCCAAGAAGTCAAGGAGTTCTTTGACAT
CGAAACTAAGGCTTTATTGGTTTCTGGATTTCTTGAACAAGAAGCCTAGA
AAATCTAAAAAGCAATATAGAGGACTTTTCATTCATTCCATTTCGTTTTC
ATTCAACTACAAGAACTTTCTAACTTTTTTCAAAATTTTCAAATTCAAAT
TTATTAGATATGTGGTAAAGGATGAATCAGGCAGAAACAAGACATTTTTC
GGAGGTGACCAGTTGACCGAGGAAAGGGGAAGATCAGTACAGAATGCTCG
GGCAGATGGAAAGACACCTGAAGAACGTGTTACTACAAAATTTGAAGATT
GGCGTGCAATAAGAACAGCATATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022997-exon-sc0000438-1575043694:166247..166529 | TCONS_00022997-exon-sc0000438-1575043694:166247..166529 | Clytia hemisphaerica | exon |
| TCONS_00022997-exon-sc0000438-1575043694:165412..165595 | TCONS_00022997-exon-sc0000438-1575043694:165412..165595 | Clytia hemisphaerica | exon |
| TCONS_00022997-exon-sc0000438-1575043694:165190..165217 | TCONS_00022997-exon-sc0000438-1575043694:165190..165217 | Clytia hemisphaerica | exon |
| TCONS_00022997-exon-sc0000438-1510915933:166247..166529 | TCONS_00022997-exon-sc0000438-1510915933:166247..166529 | Clytia hemisphaerica | exon |
| TCONS_00022997-exon-sc0000438-1510915933:165412..165595 | TCONS_00022997-exon-sc0000438-1510915933:165412..165595 | Clytia hemisphaerica | exon |
| TCONS_00022997-exon-sc0000438-1510915933:165190..165217 | TCONS_00022997-exon-sc0000438-1510915933:165190..165217 | Clytia hemisphaerica | exon |
| TCONS_00022997-exon-sc0000438-1491911889:166247..166529 | TCONS_00022997-exon-sc0000438-1491911889:166247..166529 | Clytia hemisphaerica | exon |
| TCONS_00022997-exon-sc0000438-1491911889:165412..165595 | TCONS_00022997-exon-sc0000438-1491911889:165412..165595 | Clytia hemisphaerica | exon |
| TCONS_00022997-exon-sc0000438-1491911889:165190..165217 | TCONS_00022997-exon-sc0000438-1491911889:165190..165217 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000438 | supercontig | sc0000438:165190..166529 - |
Blast
The following BLAST results are available for this feature:
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