TCONS_00022994 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022994
Unique NameTCONS_00022994
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length296

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022994 ID=TCONS_00022994|Name=TCONS_00022994|organism=Clytia hemisphaerica|type=transcript|length=296bp
AGGAGATCAGGCTTGAAAGAAACCTCTACAAAGACGTTCAAATCACTTTG
AATGTCAAAAACTTGAACATTGCTAATATCATTGCTATTGATGTCGGCAA
AGAAATCGACGAAAAAACAGAAATCGTATATGAAGGATTACAACAAAACG
AATACTTGACCAGACCATTGAATGATATACTGTTAGTGCAGATTCGTAAG
GAGATGGCATCGGGGTTCGTTCATTCtattaaaatgaaaacattgcaAAC
TGATGGCACCAATCAAGAGTTTGTTGTTGATGTCAAAGGAAGAGGT
Run BLAST on NCBI

transcript from alignment at sc0000438:268287..268827+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022994 ID=TCONS_00022994|Name=TCONS_00022994|organism=Clytia hemisphaerica|type=transcript|length=541bp|location=Sequence derived from alignment at sc0000438:268287..268827+ (Clytia hemisphaerica)
AGGAGATCAGGTAACTTTTCGCCCGAAATTCGCCGGTAAAAAGTGTCGAA
GAGATTACTCAGTTACTTAAAAGCTTTTTTACCGACGAATATTTGAGGTT
GAACATAAATTTTTGCCGACTGACGTTTGTGAGCAAGGGCTATCAGAGGG
ACAATGTGACCTTGACAGTTTGTATTTTATCTTGGTTTTATAATGTAGTT
TAATGCTTCGGTTGTTTTCAgttaatttttaaaatgtatgaattttattt
tgcagGCTTGAAAGAAACCTCTACAAAGACGTTCAAATCACTTTGAATGT
CAAAAACTTGAACATTGCTAATATCATTGCTATTGATGTCGGCAAAGAAA
TCGACGAAAAAACAGAAATCGTATATGAAGGATTACAACAAAACGAATAC
TTGACCAGACCATTGAATGATATACTGTTAGTGCAGATTCGTAAGGAGAT
GGCATCGGGGTTCGTTCATTCtattaaaatgaaaacattgcaAACTGATG
GCACCAATCAAGAGTTTGTTGTTGATGTCAAAGGAAGAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012920XLOC_012920Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022994-exon-sc0000438-1491911889:268287..268296TCONS_00022994-exon-sc0000438-1491911889:268287..268296Clytia hemisphaericaexon
TCONS_00022994-exon-sc0000438-1510915933:268287..268296TCONS_00022994-exon-sc0000438-1510915933:268287..268296Clytia hemisphaericaexon
TCONS_00022994-exon-sc0000438-1575043694:268287..268296TCONS_00022994-exon-sc0000438-1575043694:268287..268296Clytia hemisphaericaexon
TCONS_00022994-exon-sc0000438-1491911889:268542..268827TCONS_00022994-exon-sc0000438-1491911889:268542..268827Clytia hemisphaericaexon
TCONS_00022994-exon-sc0000438-1510915933:268542..268827TCONS_00022994-exon-sc0000438-1510915933:268542..268827Clytia hemisphaericaexon
TCONS_00022994-exon-sc0000438-1575043694:268542..268827TCONS_00022994-exon-sc0000438-1575043694:268542..268827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000438supercontigsc0000438:268287..268827 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.18496	0	0.281002	0	0	0	0	0	0	0	0	0.00615194	4.90472	3.16939	2.55026	1.94574	0	0.390607	4.74855	6.83977	2.91066	2.47194	0.741472	2.25306	2.6213	1.16972	1.93362	5.82523	7.67793	3.87102
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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