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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022985 ID=TCONS_00022985|Name=TCONS_00022985|organism=Clytia hemisphaerica|type=transcript|length=2884bpRun BLAST on NCBI protein sequence of TCONS_00022985-protein >TCONS_00022985-protein ID=TCONS_00022985-protein|Name=TCONS_00022985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp MLKRNLVPVFKRLLIQTSQSAKKSTFPSYGLEKKWAHYNQAAIIDQAGKPRun BLAST on NCBI transcript from alignment at sc0000437:189891..200848- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022985 ID=TCONS_00022985|Name=TCONS_00022985|organism=Clytia hemisphaerica|type=transcript|length=10958bp|location=Sequence derived from alignment at sc0000437:189891..200848- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000437:189891..200848- >TCONS_00022985 ID=TCONS_00022985|Name=TCONS_00022985|organism=Clytia hemisphaerica|type=CDS|length=10773bp|location=Sequence derived from alignment at sc0000437:189891..200848- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00022985 vs. Swiss-Prot (Human)
Match: BCKD ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Homo sapiens GN=BCKDK PE=1 SV=2) HSP 1 Score: 333.954 bits (855), Expect = 4.598e-104 Identity = 172/359 (47.91%), Postives = 240/359 (66.85%), Query Frame = 3
Query: 393 YNQAAIIDQAGKPVRLLTPEKLMFAGKSKDGRHLMKSVRFLQSELPRRIARRVMDFQGLPYVVAINPNVQHVYELYLRAFHKLSSFPEIKTLEEEKEYSDLIQRLLDDHKDVISCLAKAFHEV-KHLISYEVLGALTERTIRSRLGIRLLAEHHVALRHQKNDYIGIICTRTSPKAIIEKCVYNSRRMCEHELGHSPSVFLSGHTKSCFPHFPSPLEYILQELLKNSMKANILQHKKLNTEKPLPSLEVTICNNSDHFIIKISDRGGGIPEDRMEEIFRY----SESSTPAEDEERFEQGGMLDGLVNAANVTAVGGRISGHGFGLPSSRAYTEFLGGNLTLMPMVGLGTDVFLRIAHI 1454
YNQ+AI A KP LTP +++AG+S+DG HL+KS R+LQ ELP RIA R+ F+ LP+++ NP + HV+ELY+RAF KL+ FP IK +E +Y L+++LLDDHKDV++ LA+ E KH+ +++ ++T+ SRLGIR+LA HH+AL K D++GIICTR SPK IIEK V +RR+CEH+ G++P V ++GH + FP P PL+YIL ELLKN+M+A + H L+T +P + +TI NN II+ISDRGGGI ++ + Y +E+ST +D G LD + A G + G GFGLP+SRAY E+LGG+L L + G+GTDV+LR+ HI
Sbjct: 54 YNQSAIDAAAEKPSVRLTPTMMLYAGRSQDGSHLLKSARYLQQELPVRIAHRIKGFRCLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESH--LDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEAST--QDPRISPLFGHLD-----MHSGAQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHI 403 The following BLAST results are available for this feature:
BLAST of TCONS_00022985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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