TCONS_00022980 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00022980
Unique Name	TCONS_00022980
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3943

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000437:140291..146617-

transcript sequence

>TCONS_00022980 ID=TCONS_00022980|Name=TCONS_00022980|organism=Clytia hemisphaerica|type=transcript|length=3943bp
ACACTGAAGAAGAAGAACAAGAAAGTCATatggCAGAGTTAGCAGACATG
TTGATTTCAATGAAGGATAAACCTGGGACATTTGCAACTGATGGTGTTTT
GCAAAACTCACCTTTTCCTGGTCTCAATATTAAAGGAGTTGGTCCAATAT
GTTTACCTCTTTGTGATACTCAAGCCAAAAAGATAATCAATGTTGCTAAC
CAAGCACCCTTTGGATTAGGAGAGAAAACCTTGGTAGATGAGACTGTCAG
aaaaagttggGCCATCCAACCAGATAAAATTTTGTTGGAAAATCCCATTT
TTCAATCAAAGCTGCAATCAGTCGTTTCAAAAGTGAAAGAGGACCTTGGC
TGTGACAGCAATCACGTTAAAGCTGAACTCTACAAACTTCTTTTATATGA
AGAAGATGGTCATTTTAAACCTCACCGAGATTCTGAAAAAGAAGATGGGA
TGTTTGCAACTTTGATCGTTCAACTACCATCTATATTCACAGGAAATGAT
TTGATTGTCAACCACAATGGTAAaacaaaagttgtaaaatttgatCGCCA
AGAATCACGCTATGAAATTATATATGCTGCTCATTATGCGGATTGCGATC
ATGAAGTCACTCCATTGAAATGTGGTTATCGCATAGCACTTGTTTACAAT
TTGATTTGGACCATCCCAAATAAGCCACCTCCTAGTATGCAAAGTAATGA
AACGATAGCAAAGAAATTAACCATGTTGCTCAAAAAGGTTGGTGACACAc
atgaaaatgtttttggaTGGCCCCTGGAGCACAGATACAGTAAAGCTTCC
CTTACAAATGGACTAGCAGCTCTGAAAGGAAAAGACAGATTTATTGGCTT
GTCATTCAATTTAGCAAATAAAGCACTTTCAGAAGAAGAGAAGTTTTCGT
TTTACATTTCTAAACTTTCTCGTGAAACTGTTGAGGGCGGTGACCATGAT
TGGCAAGGCTGTTTCGAAGGAACCGGCGACCTCGATGAAGATGATACTTC
CATTGAAAAGGCGTACGGTTTTGATGGCCAACAAATCGAATTCAAAAGTG
TCAAATTTGATGTTGAGTCTGACCTTTTAGGTTTTGAAAAACAGTTTGAT
GGGGATGTTGAAAGTTTTTGGGGTGATCATGACAAAGAAGAAGTGGATGG
TCCAACTGGAAATGAAGGATCCTCCTGTAATCGTTGGTATTCTACATACA
TCATATTGGCTGTACCAGAAAAACTTAAATTTGCATTAGTTTGCAACTCT
GGTTTCAAGCAAGCTTTACGTCAAATAATGCAGGAATTTGAACAAAAGTT
ACCCAAATTGAAAGGGCACATGGTTacgtttttagaaaaattttcagcat
CTTCCTTTACTGACAAAGATGACCCATACCAGAGATACAATAGTCATGGA
AGAATGCAACAGAAAGGAGAGAAAAACATTGTCAAGGTGGTCAAAATATT
GACCAAATTGGCAGATCCAAAATTGACATCATTATTTATATCAAAGGTCT
TGGGGTCTCCCAGGTCATCATGGGGCTGCAGAAATGATAGTGAAATTTAT
GGTCTAATCCCCGAGTTGCCAATCCAATCATTTGCCACGCTTTTGTTGTC
TGTTCCTTGGCAAGGGATTGAAAAAGCAGTTATCGAACTTATCTCGCGTT
GTCCTACCGCTCAACTTTCCAAATGGCTTGATGTTTTTGCGCAAACTGAT
TTAACCGAAATTGCCGACAAAGTTATCGATGCAAGTTTCGGAAATGTTGT
TTTATTGACTAGCAGAGAACACTTTCCATTATTTCAGAAAGCTTTCCAAC
TGATTCTTAACAACGAGAAACTGCATTCATCTTGTTGGGAGAAAGTCACT
AAATCTGTTTCACTTATAAACAGTATTGAATTACTTGCATACCTATGTTC
CAGCTTTCCTCCGAAaagctttatttttgactttttgtttaaTTCTATTA
TCGGTTATGTGAAGAATGCTACTGATTTGATTGATACAGATCGTTACTCT
ACCATATTATTGGAAGCAGTCAAACCAATTCTTAATGATACAAGTTTCAA
AGATAAACTTTCGTTACTGTGTAGCCAGATCACTGCCAAGCAATGTTTCC
CTATTATTGGAAAGATTTTGAGTCACGTCGAGTTGTTCACAAACAAAGAA
ACATTTAACTTGTTTCTGCTAACATTTATGAAGCAGTTTTCTTCAATCAG
CTTGGAAGCATCACATATACCTGATATTGTCAACATTGCCAAAGTTTTGT
ACAGTCAAAACACATCCTCTGATATGGAACAGCGCAAACTTTTCATCGCC
ACCtgtcagaaaataaacaatcctgatATATTATGTGTTGTTATTACAGA
ACTATCAACAGTTTTTCACAAAGCAGAATTTTCTTTCACCTTGTCGCATT
TAATCAAATCACTTCTTATATTACTGCAGACACAACCATTCGGAAACACA
GATGCCATGGTAGCATTGCTACTTCTGATGTTCAATAAAGAGGAGGAAAA
AATGCTCGAGGAGTTTGTTTCCAATAAATTCATTGTCAATTCTGCTGAAA
TCCTTGGCAAAGTTTTGCTAACTCTTTGCTCGGACCAAAACAAGGAGAAC
TATGGATtgttgaaaataaacaaaagtttCCAAAATGTTTTAAGGTATTA
CATCAATCACTGCACTATCATGAAGCCTGATTCTCAATGCTTCTCGACAG
TTCTTATTTTCctctttaaaaatgaaaaatggtcgCTTGCTTCAGAGCTT
CTTCCAACACTACTGGAGattgatttcatcaaaaaagatttcaaaagttg
TTTTGAGTCAGTTATCaaaatcaagtcaaaaaatACTTCAAATTACATCA
AACTTTTAAACGTCTGCATAGATTCATTGGATTATTTTCTCGGTGCAAGA
AAGTCAGTATCAAGCAATAACTACAAACTGATTCTCGAATTTACCAAGAA
ACTTGCAAAAAGTGGTAACAAAGAACTTTCAGAAAAACTCTCGAATCTCA
ATCAATTGAAATGTAATGACATTGATAACATGTTCAGCAATACACCATCA
ATTTTAAAACAACTTTTGgatgacttgaaaacaaagcaTGAAAATACGAT
AACGTATCAACTTCTTACATCAACGCGAGCCAGGCATCTTCAAAACGTTC
AAGCAGCTGGACCACCGCTTTTAGATTGGAGCCAACCCAATGCTGTTATC
CAGGGTCAACCTGACGTTCAACACTTCCTTAGAAGTAACCAAGAAACATT
TatctacaaaattttcaaaagtgtttttgatGCCAGAAACTGGGTTTCAC
GCTATAGTGGAAAGAAGCCGTCTGATGGTTATAATTTTCAAACTGAAATT
AAAGGCACTGGAAAAAATACCAAAgttattcttcaaaaaaataGAGAAGA
TTATGATTTCAAGTTGAGAATGTATAGTGCGTTGATGGCAGAGCTAAAAG
TATTAAATGTCAAACTGCAAGCTCTTTCAAATAAACGACCATCAGCGGAG
CAGTCAAACCTTTCGGGTGTCTCTCAGAAGGTTCAAGTCATCCAGATTGA
TTGAatctttaaatggattttaatAGTTCTGTTTTTAagtattctttttt
taattttaaatttctgaaCCATTTCTGAACTTTCCAACGCAACCGTTTTT
CAGAGGTACCATATTGTTATATCTGAATTTTATCGGAGTGATTGTACCtg
aattattttgataaatctaaACTTGACAGGCTTTTTACCTACCAAATAGA
AAACAGTTACTGTATATAGGATCCTTCTTAGACACAGATCCATGGACTTG
GAATAGATTTTTACATCTGCTggtttaaaattcattttcaacCTCCACGT
TAACAGATTTCAAGGATATCTTAGCacattttgttttattatttttcagt
atcatttttcttcacttttacACGCAGCGTCTCTAATagtacc

Run BLAST on NCBI

transcript from alignment at sc0000437:140291..146617-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00022980 ID=TCONS_00022980|Name=TCONS_00022980|organism=Clytia hemisphaerica|type=transcript|length=6327bp|location=Sequence derived from alignment at sc0000437:140291..146617- (Clytia hemisphaerica)
ACACTGAAGAAGAAGAACAAGAAAGTCATGTGAGTCTTGATCAAAATGGT
ATTTTATAGATGGAATGAACTTGTAAACTTGAACTTACTCATAGTATAAA
ATAATCTTTTGCTAGAAATAAGTTACTCTCAGGTGCCAAAAAACGGGCTC
CTCTACTTGTTAATTTTTCTATTTTTGAACCCCCAGACTTAAGTAGGAAC
TTAAATAGACCCCCTTGTTTATTGATTTTTGAAAATATTTTCAGCTGTCG
AAAGAAGAGTCCCATATTTTGCCCTAAATAGTCAGCTTTTGCCTATAATT
ACCTTATTTTGGAGGTATTTAGAGGTACAATTTCCAACCTCCTAAGTTAT
TAAAACAATAAACAAGCATCTAAAAATTACCATTCAACAAAAAAACAATG
ACTTTAGGCTACAAACAATAATTTCCTTTTAGCATAAATTCCACTATCAT
GGATTTGCTAACAAATCCCAGCATTACTTTGAATTTTTTGGGGTTTTAAC
CATAATTAGACTCGATTTTAGATAAATGAATTTAGAGGTCTTTTAGAGAT
GTTTTCAAGATTTCACTGTCTCTTGCTCAATAGAAGTTTAATGTTTTGGC
ATTTTCTAGCTTAACTTTTGATCTTCTGGACCAAATTCAATAAATGAATC
ATCACAATCTTTGTTATCCTTTCTCTTTCTAATGAAAAAGGTTTGTTTCC
TTAAAAGAAGTCATATGACATGAGAAGTTTCACATCAAACAGGGGAATTT
ATTTGGGGCACACCTAGTAACGGTTATAATTTTTAAATCTTTTTTTGACT
CCCTTTTTTAAGGAGGAAATTGACAATACGGATGAAGAAGATTCAAATTC
AGATGAAAATGATGGCCATGACAATACACGGAAAATAGAGCCTAAGCACC
CAATAGTAAATATCATTTTTAGAGAAAAAGATTACGTTTTTCTCTTTTTC
TAAATTTCTTTCTTTTTCTAAACTTATTTTTANTTACGTTTTTCTCTTTT
TCTAAATTTCTTTCTTTTTCTAAACTTATTTTTAGGTGTCAGAAATGTTT
TTCATCTTAGATCTGCTTGGATATCTTTCCCCTGAGATTTGCAAGCAATA
GCTTTAACCAATACTTAGCCTGTTTGTTGTTTAGCTTACAATGAGTTTTT
CGTTAATTTCAATAATTTTATGAAACTAATCTTTACATCATAATGTAATA
TTCAAGGTCCTTTTTATTTTTAAGATGGCAGAGTTAGCAGACATGTTGAT
TTCAATGAAGGATAAACCTGGGACATTTGCAACTGATGGTGTTTTGCAAA
ACTCACCTTTTCCTGGTCTCAATATTAAAGGAGTTGGTCCAATATGTTTA
CCTCTTTGTGATACTCAAGCCAAAAAGATAATCAATGTTGCTAACCAAGC
ACCCTTTGGATTAGGAGAGAAAACCTTGGTAGATGAGACTGTCAGGTATG
TCTATAAACGAGAATATTTGATAAAACCTACTTTTTCGACAAGATTTACC
CAAACTTTTTTCTGAAATCAATGCTTTTCATTTAAAATTATTATACTAAA
AGAATAATTACCTACCCTATTTTATCCAATTTTGTTTTAATTCATTTTAG
AAAAAGTTGGGCCATCCAACCAGATAAAATTTTGTTGGAAAATCCCATTT
TTCAATCAAAGCTGCAATCAGTCGTTTCAAAAGTGAAAGAGGACCTTGGC
TGTGACAGCAATCACGTTAAAGCTGAACTCTACAAACTTCTTTTATATGA
AGAAGATGGTCATTTTAAACCTCACCGAGATTCTGAAAAAGAAGATGGGA
TGTTTGCAACTTTGATCGTTCAACTACCATCTATATTCACAGGAAATGAT
TTGATTGTCAACCACAATGGTAAAACAAAAGTTGTAAAATTTGATCGCCA
AGAATCACGCTATGAAATTATATATGCTGCTCATTATGCGGATTGCGATC
ATGAAGTCACTCCATTGAAATGTGGTTATCGCATAGCACTTGTTTACAAT
TTGATTTGGACCATCCCAAATAAGCCACCTCCTAGTATGCAAAGTAATGA
AACGATAGCAAAGAAATTAACCATGTTGCTCAAAAAGGTAAAATAACCTT
AATTACACTTTAAGTTTAGTAAGAAATCCTATTTCGTTTACACAATTATG
TGTTTCCCTTTTCATGAAGAGTTTGCGTATTGACCAACCTTTTTGGTGCT
TTTTAAATCAATACAGTATTACCGAAAGCAACCGGTGAGACAACCATTTT
TTCCGATATGTTCTGTGAAATTTCAATCTGTTCTGATTGGATCAAAAAGT
ATCTGAAGTATGATAAAGGTCTCCTAGAAATTAGAACACGTTTGTATACT
ATAAGAATTTGAAGATCATAACATGTAGTAGATAAAAACACATACCACAC
GTACAATTTCTTTGCCGGTTGCTTTTGTATTACATTGGGATTATTAAAAT
TTGATCAAGCAATGTGTTGAAAAACATCTTTATAATAGCTTTATGTCCCT
TGTTAAAAATTTCGATGTTGTGTAAAAAAATGATTTCTTTGGTCACACTG
AGGTATTATTGAGGTGAATTTAACATACTTATTATTGGATGAAAATTCTT
CATCTATTTGCACAAATCCTTTTTCATTTAAAATGTGTCCAAAATGAATT
TGGAATGTTTGATGAAATATTGGATTTATTAAGGCTTTATTGTTATATAA
TAAGATTTGTTGACAATATATTTAACATCATTCTAAAAATAGGTTGGTGA
CACACATGAAAATGTTTTTGGATGGCCCCTGGAGCACAGATACAGTAAAG
CTTCCCTTACAAATGGACTAGCAGCTCTGAAAGGAAAAGACAGATTTATT
GGCTTGTCATTCAATTTAGCAAATAAAGCACTTTCAGAAGAAGAGAAGTT
TTCGTTTTACATTTCTAAACTTTCTCGTGAAACTGTTGAGGGCGGTGACC
ATGATTGGCAAGGCTGTTTCGAAGGTCAGTTTCAAGTTTCACCTGTCTTA
TCTTTTTCCTTATAATTTGTTTTTATTAGAATATTTTTTTCAAAATGCCT
ACAGGCCAAACAAAATTAAATATAGATGTAATACAGTTGGGCTGCCTCAA
GCTGAATTTAGGCTCTTATTGAGAAACAACTATTATAAGTCAAGTGAAAC
AAATATGTACTCTGTAACCCATAAAAAGGAAATTCAAAAGGATAAGAATC
ATATTGGCAGCTCTGTTGGAACGTATTTCGAATTTTGGGAAAGTACTTTT
TGTGCAAAGGCCAGTGTAGATTTCTAGATTTTCATTTTTGAAATTAGCCA
TAATTTTACCAATTTTATGTGATAATTTGATTTATTCATTATTTCTCAAA
CAGGAACCGGCGACCTCGATGAAGATGATACTTCCATTGAAAAGGCGTAC
GGTTTTGATGGCCAACAAATCGAATTCAAAAGTGTCAAATTTGATGTTGA
GTCTGACCTTTTAGGTTTTGAAAAACAGTTTGATGGGGATGTTGAAAGTT
TTTGGGGTGATCATGACAAAGAAGAAGTGGATGGTCCAACTGGAAATGAA
GGATCCTCCTGTAATCGTTGGTATTCTACATACATCATATTGGCTGTACC
AGAAAAACTTAAATTTGCATTAGTTTGCAACTCTGGTTTCAAGCAAGCTT
TACGTCAAATAATGCAGGAATTTGAACAAAAGTTACCCAAATTGAAAGGG
CACATGGTTACGTTTTTAGAAAAATTTTCAGCATCTTCCTTTACTGACAA
AGATGACCCATACCAGAGATACAATAGTCATGGAAGAATGCAACAGAAAG
GAGAGAAAAACATTGTCAAGGTGGTCAAAATATTGACCAAATTGGCAGAT
CCAAAATTGACATCATTATTTATATCAAAGGTCTTGGGGTCTCCCAGGTC
ATCATGGGGCTGCAGAAATGATAGTGAAATTTATGGTCTAATCCCCGAGT
TGCCAATCCAATCATTTGCCACGCTTTTGTTGTCTGTTCCTTGGCAAGGG
ATTGAAAAAGCAGTTATCGAACTTATCTCGCGTTGTCCTACCGCTCAACT
TTCCAAATGGCTTGATGTTTTTGCGCAAACTGATTTAACCGAAATTGCCG
ACAAAGTTATCGATGCAAGTTTCGGAAATGTTGTTTTATTGACTAGCAGA
GAACACTTTCCATTATTTCAGAAAGCTTTCCAACTGATTCTTAACAACGA
GAAACTGCATTCATCTTGTTGGGAGAAAGTCACTAAATCTGTTTCACTTA
TAAACAGTATTGAATTACTTGCATACCTATGTTCCAGCTTTCCTCCGAAA
AGCTTTATTTTTGACTTTTTGTTTAATTCTATTATCGGTTATGTGAAGAA
TGCTACTGATTTGATTGATACAGATCGTTACTCTACCATATTATTGGAAG
CAGTCAAACCAATTCTTAATGATACAAGTTTCAAAGATAAACTTTCGTTA
CTGTGTAGCCAGATCACTGCCAAGCAATGTTTCCCTATTATTGGAAAGAT
TTTGAGTCACGTCGAGTTGTTCACAAACAAAGAAACATTTAACTTGTTTC
TGCTAACATTTATGAAGCAGTTTTCTTCAATCAGCTTGGAAGCATCACAT
ATACCTGATATTGTCAACATTGCCAAAGTTTTGTACAGTCAAAACACATC
CTCTGATATGGAACAGCGCAAACTTTTCATCGCCACCTGTCAGAAAATAA
ACAATCCTGATATATTATGTGTTGTTATTACAGAACTATCAACAGTTTTT
CACAAAGCAGAATTTTCTTTCACCTTGTCGCATTTAATCAAATCACTTCT
TATATTACTGCAGACACAACCATTCGGAAACACAGATGCCATGGTAGCAT
TGCTACTTCTGATGTTCAATAAAGAGGAGGAAAAAATGCTCGAGGAGTTT
GTTTCCAATAAATTCATTGTCAATTCTGCTGAAATCCTTGGCAAAGTTTT
GCTAACTCTTTGCTCGGACCAAAACAAGGAGAACTATGGATTGTTGAAAA
TAAACAAAAGTTTCCAAAATGTTTTAAGGTATTACATCAATCACTGCACT
ATCATGAAGCCTGATTCTCAATGCTTCTCGACAGTTCTTATTTTCCTCTT
TAAAAATGAAAAATGGTCGCTTGCTTCAGAGCTTCTTCCAACACTACTGG
AGATTGATTTCATCAAAAAAGATTTCAAAAGTTGTTTTGAGTCAGTTATC
AAAATCAAGTCAAAAAATACTTCAAATTACATCAAACTTTTAAACGTCTG
CATAGATTCATTGGATTATTTTCTCGGTGCAAGAAAGTCAGTATCAAGCA
ATAACTACAAACTGATTCTCGAATTTACCAAGAAACTTGCAAAAAGTGGT
AACAAAGAACTTTCAGAAAAACTCTCGAATCTCAATCAATTGAAATGTAA
TGACATTGATAACATGTTCAGCAATACACCATCAATTTTAAAACAACTTT
TGGATGACTTGAAAACAAAGCATGAAAATACGATAACGTATCAACTTCTT
ACATCAACGCGAGCCAGGCATCTTCAAAACGTTCAAGCAGCTGGACCACC
GCTTTTAGATTGGAGCCAACCCAATGCTGTTATCCAGGGTCAACCTGACG
TTCAACACTTCCTTAGAAGTAACCAAGAAACATTTATCTACAAAATTTTC
AAAAGTGTTTTTGATGCCAGAAACTGGGTTTCACGCTATAGTGGAAAGAA
GCCGTCTGATGGTTATAATTTTCAAACTGAAATTAAAGGCACTGGAAAAA
ATACCAAAGTTATTCTTCAAAAAAATAGAGAAGATTATGATTTCAAGTTG
AGAATGTATAGTGCGTTGATGGCAGAGCTAAAAGTATTAAATGTCAAACT
GCAAGCTCTTTCAAATAAACGACCATCAGCGGAGCAGTCAAACCTTTCGG
GTGTCTCTCAGAAGGTTCAAGTCATCCAGATTGATTGAATCTTTAAATGG
ATTTTAATAGTTCTGTTTTTAAGTATTCTTTTTTTAATTTTAAATTTCTG
AACCATTTCTGAACTTTCCAACGCAACCGTTTTTCAGAGGTACCATATTG
TTATATCTGAATTTTATCGGAGTGATTGTACCTGAATTATTTTGATAAAT
CTAAACTTGACAGGCTTTTTACCTACCAAATAGAAAACAGTTACTGTATA
TAGGATCCTTCTTAGACACAGATCCATGGACTTGGAATAGATTTTTACAT
CTGCTGGTTTAAAATTCATTTTCAACCTCCACGTTAACAGATTTCAAGGA
TATCTTAGCACATTTTGTTTTATTATTTTTCAGTATCATTTTTCTTCACT
TTTACACGCAGCGTCTCTAATAGTACC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012910	XLOC_012910	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000437	supercontig	sc0000437:140291..146617 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.10234	2.70281	1.05115	0.615207	0	0	0.231366	1.96578e-09	0.105041	0	0	0.0626965	0.000486751	0.0671545	0.170651	1.63268e-10	0.00546582	0	0.202294	0	0.929126	0.000319518	4.36644	4.56062	0	0.835671	0.372214	0.275877	1.79962	4.54048

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00022980 vs. Swiss-Prot (Human)

BLAST of TCONS_00022980 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00022980 (transcript) - C. hemisphaerica