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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022977 ID=TCONS_00022977|Name=TCONS_00022977|organism=Clytia hemisphaerica|type=transcript|length=1225bpRun BLAST on NCBI protein sequence of TCONS_00022977-protein >TCONS_00022977-protein ID=TCONS_00022977-protein|Name=TCONS_00022977-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp TISFFRMTNKRMEQIEGKDSESKLGVLSPNFQSTPLVKKDYGMKGISPRSRun BLAST on NCBI transcript from alignment at sc0000437:122139..135793- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022977 ID=TCONS_00022977|Name=TCONS_00022977|organism=Clytia hemisphaerica|type=transcript|length=13655bp|location=Sequence derived from alignment at sc0000437:122139..135793- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000437:122139..135793- >TCONS_00022977 ID=TCONS_00022977|Name=TCONS_00022977|organism=Clytia hemisphaerica|type=CDS|length=19584bp|location=Sequence derived from alignment at sc0000437:122139..135793- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00022977 vs. Swiss-Prot (Human)
Match: CCD62 (Coiled-coil domain-containing protein 62 OS=Homo sapiens GN=CCDC62 PE=1 SV=2) HSP 1 Score: 183.726 bits (465), Expect = 4.824e-51 Identity = 113/292 (38.70%), Postives = 180/292 (61.64%), Query Frame = 2
Query: 308 SDVDSSTVLRQRHELQLMIAELKDRDRELNELVSSHHQQLVAWELDRQRLITVEKQMAKFKSELKKRHSQCKILKDRLKEVEGQYSMKTTELESTQKHLHQVSQKASDNEIEVEEYRATNVTLKETVTELTKSLAESQSRQQEIATILRLKDKDIEDANSRIGELTEKLQTSNKDLKKSKQFENQSKIHIDKLTQEKTSLKSQLEKLEEAVIKQNTTNDESMEEFNNMKQEMVVVQKELLLAGEREKRKDSLLQLSRSKQERTEMELKQVRKVLT-----LKFIYSRVPNSQ 1168
S+V+ ST+ +QR ELQL+I ELKDRD+ELN++V+ H QQL++WE DRQ+++T+E++ +K + EL KR + L ++K +E T L+ TQ L +++QKA+ + + E+ A N TL T+ EL+ + + Q+R+Q + T+++LKDKDI +A + I + + K + L+ +K E Q+ +LK ++ KL+E + ++ T N+E EE +KQE + ELL EREKRKD LL +++SKQERT EL +R++ L+F+ V NSQ
Sbjct: 16 SEVEISTIEKQRKELQLLIGELKDRDKELNDMVAVHQQQLLSWEEDRQKVLTLEERCSKLEGELHKRTEIIRSLTKKVKALESNQMECQTALQKTQLQLQEMAQKATHSSLLSEDLEARNETLSNTLVELSAQVGQLQAREQALTTMIKLKDKDIIEAVNHIADCSGKFKMLEHALRDAKMAETCIVKEKQDYKQKLKALKIEVNKLKEDLNEKTTENNEQREEIIRLKQEKSCLHDELLFTVEREKRKDELLNIAKSKQERTNSELHNLRQIYVKQQSDLQFLNFNVENSQ 307 The following BLAST results are available for this feature:
BLAST of TCONS_00022977 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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