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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022954 ID=TCONS_00022954|Name=TCONS_00022954|organism=Clytia hemisphaerica|type=transcript|length=533bp
TAGGTTTACGTCATCCATCTGCGAAAACGAAGTCGTCGGCTATCAGGATA
TTGCATTACCTACTTACCATATGTTCCAAAGCTCAAGGGACCAAAGAAAA
GTTTGAAGTGAACAAACACACTGTACCATACTTAGCAGTACTAATGTCAG
TCAGTGACGAAGTCTTATCCAAACTCAACAACGAAAGACCAGTCTACACC
CCAAGCAACTTCAAAACGCTCAAACGTCTGAAATCCAAGAAAACGATAGA
CGTTTCTAGGAGAGATAGCGCACCATCCGTTGTCATAACGACTAGCTCAC
AAGTGGATTCGGATAGCGcgcaaaaacaacaaaagcgaCAGATCGATTTC
GATACAGGGACATACAATTGTTTGCTGAACCCCCGGATATTGGATACAGA
GAATTATCAAGTCCTCTTGGTCGTTATAttgTCTACCATGTTGGATCATT
CGATGGACGACTTTGAAGGAAGAATTATTTTGGAAGTTTTGGCTGAAGCT
TCATCACTTTATACAGATATCTTCCCTGTAACG Run BLAST on NCBI transcript from alignment at sc0000437:36160..38936- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022954 ID=TCONS_00022954|Name=TCONS_00022954|organism=Clytia hemisphaerica|type=transcript|length=2777bp|location=Sequence derived from alignment at sc0000437:36160..38936- (Clytia hemisphaerica)
TAGGTTTACGTCATCCATCTGCGAAAACGAAGTCGTCGGCTATCAGGATA
TTGCATTACCTACTTACCATATGTTCCAAAGCTCAAGGGTATGCTTTGCT
CTTTTTTATTTCATCTTGTCCACTCGTCCGGGGTCCACTTATTAAGGCCT
TTGAAGATTCTAGTTGTTTTTGGATGTTGAAAGTAGGGTAAAGAAATTAT
TTAATTGAAAATAATAATCTTTTACTCATGTAGGTTTCACTCTCATAATT
ATAGTATAGTTTTGTTGTCTTTTTNATTCATGTAGGTTTCACTCTCATAA
TTATGGTATAGTTTTGTTGTCTTTTTCAAAATGGCGACCTTGTCAAGTGC
TCGTTGTCTACTTCACTTGACTCAGCGTCATCAAAAATTATCAAAAAGCA
AAGTTCAGCCAGAAGTAAACTCTTGTTTGATTTTTGTGCACTGACATTCA
TGATATGACATCCAAGGGGGGCCGCCACACCTACTCTAAATAAGGGCGCT
TGAAATAGCTTAATTTTTGGTCCAGCTTAGAACATTTCGTTACAGTGCAT
TAGCATTTTTCTGTCCGTGGTGCTGTATGTCCGTTTTTGAAAAAGAAGCG
CTTTGTCAATACAAGTTCATTTTGGAAAAAACGGCGCCTCGCAAAAATTA
CTGCACTTCGAAAACTTTGACTTCTGGTACGAAGTGTACGCATTGCGAAC
AAACATTCGACTATTGCTATGTCGCTGGGCCATTTTACGTCGCTTCGGTT
TCTTGTTGTGTCTTGAAACATCGATAGGAAATGTAAAAATTGTTTCCATT
AACCTTAACTAGCTTGTGCTTTTCTAATTGACCCTTCCAGAAAATGTCCG
TACATGGGGGGCGGAGGATATAGTGTCCGGGGGGTAGTGAAAATCTACAA
AATTTGCCTTGTCCGGGCTTGGCTTGCCTTTTCACTTGCTCTATATTTGT
CTTGCTCTGTTTGAGGGTAATTTTGAATGGCTAGGGGGTCAACCGATGCT
TGTCCAGGGTGGTACACCTACTGTCCGGGGGATCAAATGTCACAATTTCC
AAGGGGTCAATTTCCAGAAAATGTTATATCCTCCACCAATTTTCATATCT
TGACTTTCAATGTTTTCTTAATCAATGCTTTTGCTTTCTCTCTCTCTAAC
AGGACCAAAGAAAAGTTTGAAGTGAACAAACACACTGTACCATACTTAGC
AGGTCAGTATGAGTCATCTATTATTGATTGATTGATTGATTGATTGATTG
ATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGAT
TGATTGATTGATTGATTGATTTTTGATTGATTTTTAGATTTTTTGATTGA
TTGATTTGATTTTTGATTGATTGATTTGATTTTTGATTGATTGATTTGAT
TTTTGATTGATTGATTTGATTTTTGATTGATTGATTTGATTTTTGATTGA
TTGATTTGATTTTTGATTGATTGATTTGATTTTTGATTGATTGATTTGAT
TTTTGATTGATTGATTTGATTTTTGATTGATTTATAGATTGATTGATTGA
TTGATTGATTGATTGATTGATTGATTTGTCGATATATTTTATTGTCTAAA
AGTAAAGCAAAATGAACATATAAGAGATGAGGGATGCAATTAAGATGAAT
ATTACGAAGCAAATTTATCTCCCTTTTATCTCCAGTACTAATGTCAGTCA
GTGACGAAGTCTTATCCAAACTCAACAACGAAAGACCAGTCTACACCCCA
AGCAACTTCAAAACGCTCAAACGTCTGAAATCCAAGAAAACGATAGACGT
TTCTAGGAGAGATAGCGCACCATCCGTTGTCATAACGACTAGCTCACAAG
TGGATTCGGATAGCGCGCAAAAACAACAAAAGCGACAGATCGATTTCGAT
ACAGGGACATACAATTGTTTGCTGAACCCCCGGATATTGGATACAGAGAA
TTATCAAGTCCTCTTGGTCGTTATATTGGTAAGTTTTTTATTTGTTTTAC
AAACTATGCTGAGATCATGGTTTTTTCGTCAATATTGCATAGACCCTCCT
GGATTTTTAGGAAAGTTTTAAGGCACTTTATTAGATTTTTATTTAAATTT
CAGAGATCTTCTCTGGATTTTGACCCTTGATTTTCCGAGTTTTAGATTCT
TGAAAAAAACAAAAACAGCGAGTCAAGATTAATTCGAAGATCTACCCACT
ATAACTTAAAACTTTTAGCTAAACGTCATTTAATTAACGGTATGAGATAT
TTTGCCTGCAGATTCCTTTCATGGTATTGAGTAAAAGTTTCAAATCATTT
TGCCTAAGTTTTCACCTCACTCGAGATATTCAAGTTACAAGTTTTTAACT
TTTAGCAAGAAAACAATAGAATTATGACGAAGAACCCAAACTCAAATTGT
CATATCTCGATTTTATATTTGACTTGGGAAAATATATTTTGAGGTTTTCC
CGATGACCAAGGAAAGATACAGGCAAAAGATATGAACCCATCTGATTTAT
CCCTCTGAGTCCTTTAAAGTGGGGTCTGCCGAGGGTACAAAATACCGGAA
TACCGGGAATTTGTTCTTAAAATATGGCGTATCGGCCAAAAATTTCTCGG
AAGCCTCTTTAAGCTAAAATTGTATAAATAGAATTATCTGTTGAAGAAAA
TGCTTGTCGTTATTTTCAACTTCAGTCTACCATGTTGGATCATTCGATGG
ACGACTTTGAAGGAAGAATTATTTTGGAAGTTTTGGCTGAAGCTTCATCA
CTTTATACAGATATCTTCCCTGTAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022954-exon-sc0000437-1575043694:38849..38936 | TCONS_00022954-exon-sc0000437-1575043694:38849..38936 | Clytia hemisphaerica | exon |
| TCONS_00022954-exon-sc0000437-1575043694:37735..37784 | TCONS_00022954-exon-sc0000437-1575043694:37735..37784 | Clytia hemisphaerica | exon |
| TCONS_00022954-exon-sc0000437-1575043694:36959..37251 | TCONS_00022954-exon-sc0000437-1575043694:36959..37251 | Clytia hemisphaerica | exon |
| TCONS_00022954-exon-sc0000437-1575043694:36160..36261 | TCONS_00022954-exon-sc0000437-1575043694:36160..36261 | Clytia hemisphaerica | exon |
| TCONS_00022954-exon-sc0000437-1510915933:38849..38936 | TCONS_00022954-exon-sc0000437-1510915933:38849..38936 | Clytia hemisphaerica | exon |
| TCONS_00022954-exon-sc0000437-1510915933:37735..37784 | TCONS_00022954-exon-sc0000437-1510915933:37735..37784 | Clytia hemisphaerica | exon |
| TCONS_00022954-exon-sc0000437-1510915933:36959..37251 | TCONS_00022954-exon-sc0000437-1510915933:36959..37251 | Clytia hemisphaerica | exon |
| TCONS_00022954-exon-sc0000437-1510915933:36160..36261 | TCONS_00022954-exon-sc0000437-1510915933:36160..36261 | Clytia hemisphaerica | exon |
| TCONS_00022954-exon-sc0000437-1491911889:38849..38936 | TCONS_00022954-exon-sc0000437-1491911889:38849..38936 | Clytia hemisphaerica | exon |
| TCONS_00022954-exon-sc0000437-1491911889:37735..37784 | TCONS_00022954-exon-sc0000437-1491911889:37735..37784 | Clytia hemisphaerica | exon |
| TCONS_00022954-exon-sc0000437-1491911889:36959..37251 | TCONS_00022954-exon-sc0000437-1491911889:36959..37251 | Clytia hemisphaerica | exon |
| TCONS_00022954-exon-sc0000437-1491911889:36160..36261 | TCONS_00022954-exon-sc0000437-1491911889:36160..36261 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000437 | supercontig | sc0000437:36160..38936 - |
Blast
The following BLAST results are available for this feature:
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