TCONS_00022948 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022948
Unique NameTCONS_00022948
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1007

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022948 ID=TCONS_00022948|Name=TCONS_00022948|organism=Clytia hemisphaerica|type=transcript|length=1007bp
tttagaTGCAATTGATGTATTGTAcattaaaaagaagaaagatgaaGAAG
ATTGCCAATCCGAAATCTTCCTTTTTAGACGTCTTGGAACATTTGTTGGA
TGGAATGTTCAAGAAAATGAGATACACAAACTTCGACAAGTGTTTCAAGA
ATTTGAATTATCACCATACAAAGAAGATGATATCCTTGAAGAAAGTGAAC
TCATGGATTTTGAAATGATTTCGGATACGCCAACCAACTTAATGGATGGT
AATATTTATGTGAATGACAAAACTGAAAACAACATTCAGACACTGGAAAA
GTTAGCTTTCTCCAATGCTATGGCTCTTTCAGTTCGATTGAGTATGTGGG
AAACAGCGGTGGATACCTTTTCAAATTCTATGAAGCAGATACCAGAGCAT
ATGAAGGAGGGTCATAAAGTAAACATGTCACGACAAGAAGTTTTACGGAA
AATTGGAGAACTTCTTACACTCAGGCATCAAATCAACTTGTATTCAGATT
TGTTGGCAACACCTGATTTCTTTTGGGACCGTGACGAACTAGAAAAATTG
TACGCCAAGACGTGCACTTATTTGGAAGTTGGTAAACGAACCAAGGTGAT
GAATGAGAAATTGAATTTATGTACGGAGTTGGTAGAGATGTTGAGAAGTC
ATTTGAATGAACAACATTCGCATCGATTGGAATGGATGATCATTTGGCTT
ATCACCATTGAGGTTGTATTTGAAGTCGCCCATTGGATAGACAGAGTACT
ATAGAAAATTAGAAGATATGGTGACCAACAGCAAGGACCATATATACCTG
ACCAATCTCTAATCTTATCTTTTGAATCAATACCTTAAGTATATATTAgg
gaaacaattttttaattcggtatTTTTAAAGATATAGCTTTATTTGATAC
ATTTCGCTCagaattttagatattttttattacttttacaATTAACTCTT
TATAACAATTATATTATAATAGGCAACTATGAATTCACTCagaaaattgg
ataaaaa
Run BLAST on NCBI

protein sequence of TCONS_00022948-protein

>TCONS_00022948-protein ID=TCONS_00022948-protein|Name=TCONS_00022948-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
LDAIDVLYIKKKKDEEDCQSEIFLFRRLGTFVGWNVQENEIHKLRQVFQE
FELSPYKEDDILEESELMDFEMISDTPTNLMDGNIYVNDKTENNIQTLEK
LAFSNAMALSVRLSMWETAVDTFSNSMKQIPEHMKEGHKVNMSRQEVLRK
IGELLTLRHQINLYSDLLATPDFFWDRDELEKLYAKTCTYLEVGKRTKVM
NEKLNLCTELVEMLRSHLNEQHSHRLEWMIIWLITIEVVFEVAHWIDRVL
Run BLAST on NCBI

transcript from alignment at sc0000437:166293..175664+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022948 ID=TCONS_00022948|Name=TCONS_00022948|organism=Clytia hemisphaerica|type=transcript|length=9372bp|location=Sequence derived from alignment at sc0000437:166293..175664+ (Clytia hemisphaerica)
tttagaTGCAATTGATGTATTGTAcattaaaaagaagaaagatgaaGAAG
ATTGCCAATCCGAAATCTTCCTTTTTAGGTGAAAAAGTAAATCCTttatt
atttatgtttttaattttaaagctCGGAGACAAGGCTACATTATTATCTC
CTTCATTTCGAGTGAAAAACTCCTACTAAGAGTAGGACCTAAAATCGAGG
AGCTGTATACATAAAACTAGATGACTTATAGTAGTTTAGGAGAACGCGAC
GATCTATTGAATAACAgattactccacatacattacttcCCCTCAGCCAA
TACAAACGAGATAAGATATCTTGTTCCTAGGTAACTGCTGTGTTGTAAAT
GAGAAAACAATACGATAACgttattgttaaaaaaaatctgctggAGTAAT
TAGTCATTCAAAAGACCGTCGCGTTCTCCCAAACGACTATAAGATGAGGC
AAGTATTGGAAGAAGTATCAATATTCATTTTAGTTGGCTACAACGAAGAA
GTAGACACTTGTATTGTCTATTCTCCATTAGAGAGATGGATTCATTAAAT
AAAGGCGACCCTGAGTTATGGTTCATTTATTAAGTTAGGTCGATAACAAT
AACAAAATCGGGCTTTAATTTTGAATCCCCTTATATCGCTTTTTCTTCAG
ACGTCTTGGAACATTTGTTGGATGGAATGTTCAAGAAAATGAGGTATGAT
AATTGCGGATAATTTCCTAACttaagttttaaaaatattcagtGGTGAAT
CTAAGGAGGACTTATATTATGACAGGGAGTGTTGATTATCAAAACTCTCT
TTAATTGATTTTGACCCCCTCCCCTCCGCCACGTTTGCATGGTCATCGTA
AAAACTCTTTCCTTTCGAATTTAGTTTAACTTAATAGAAGCAAAAAAact
aaatgttaaaaaattatgATCCTAATTTTATCTGGCATGTAAGAGCATCT
TCGTCTTGCAGAAATAAACCAAAcatgaataaaaatgttcaaattctGAC
AATTTTAAATGATAAAGTAGTGTTCATCTTTATTAAAGgaattatttttg
acattttgtatACCTTTTAAGCTTGGTGTCCACTGAAAAAAATGAGTTCG
TCGCAAATACCTGttgacaaaaaataaatccagacatATTTCTGGAATTA
GAaatctattgttcttttttacgacgaagtaaaaaataataaacgatgTA
GAttgaaaacgttttcattttacatcgcttttttctttttcgcccTATCG
caaataaaaaatagattttcgattCCAGACATCtgtttggatttattttt
tgcgaCAATCAAATACGCGATGAACTTATTTTTTCCAAGTGGACACCCAG
CTTTATGGTCCTAAGAAACACCTCTAAATACTTTGacccaattattttcc
aaattttcaaaattgggtCAAAAGATTTAGAGGTGTCACTCTGGACCATG
AAATGTAagacaaatataaaaaatcatctgataatccctttaaaGTAGTC
TCTGTGGTGCCTACCTTTTAGGCACAATAGTAATAGTTAAACTATTACAA
TACAAATTACCATACAACACTCTTCTATTTCAGATACACAAACTTCGACA
AGTGTTTCAAGAATTTGAATTATCACCATACAAAGAAGATGATATCCTTG
AAGAAAGTGAACTCATGGATTTTGAAATGATTTCGGAGTAAGTCTAGTGA
AATTTTTTAAGGTGGGACTAAGGTGGTTTGGTTGTAAAATTGAAACATCT
CATCAACATCAATCAATGATATATAACTTTAGTAGTTACCTTTTACTATT
GANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTTTACTATTGAAACCTAGTGGATAATCTTGTACATATGACCTGTATTAT
ACTTGAAAGAAGACTTAAGTTTTGCTTCCTAAATTCTGCTGGGAATTCAA
ATCTTGGTGGGGATATACTTAGTGGTGGGACCATGCATGATTGATTCTAG
GTGGGGGTTTTAATGTGTGCTGGGACCTTATTTTtttggtgggacctgga
accccccttgcacactatgagATCTCCCTCACCTTGTaatgtttttggac
ctaccccggtggaggtcctataaattaacctttgtccgttcgttcgttcg
ttcgttcgttagttaccaacttttctcgagattggctcattagttttttc
tgattttttgcacaaagatgcataactataaacccctcgaatgtgacgga
gcccgattttcgaaaaaaagaattggggcaaatttgtgccaaaaaacggc
taaaaaacgggttttttggactttgtgaaaaattggatcattaatttttc
tgattttttgcatgaaagtagggtaccatcataggtaaaagatggctcaa
gcagatctttgcaaaaaaaatttggttgactcaaaaaacgcatgtttatc
tataagaatcactattaacaagcatacatcaatgttcttagttaaattac
taaatttttttatgagatagatgtttttttgctcatgagggcttacttat
aaagaatatgtgtgtttagacatgaaattttggttgcttggcgtgttttt
atagaaaaactggccaaatttgatatttttttataagcacattatcaatt
acttaggtattagcttttctcgagattggctctttcattctttatgattt
tttgcacaaagatgcataactataaaccctcgaatgtgacggagctggat
ttttgggaaaaaaattttggggtaaatttcagcttaAAGACGactaaaaa
aaggattttttggactttgtgaaatattggatcattgtttttttatgact
ttttgcatgaaagtaggtaaaagatggctcaagcagatttttgtaaaaaa
aacattttcagctcaaaaaaagcatctttatctataataagaatcactat
taataagcatcatcaatgttcttaaaattactgaatgtttcgatgagata
tgttttttttgctcacgaagtcttaaatatgaaagaatatttcaagagca
tgaaattttggtttctaaacgtttttttataagaagcaaacgactaattt
taaaagatcgtcactatttgtgttctgaatgattgtttaatggtcacgct
cacgtagatatcaattatatatgtgttaaatgcataaccaggtaggtcca
taaaagtatcacttgtttcttataagaatatccaaaaaaaaattaagcat
tcggatgttcttagctttttaagttttaggcctaaaaatatctttatttt
caccaatttgttagtatttttatgcgatttcctaagaaattttgTGTTTC
AGAGTCTACAAAGCCTCAAAACgctctcaacttgttcttaatattttggc
catcgaaaccttttgttcttatttagtttgctcttataaaatagCGTGTA
TGTGGTTTAATGGTAATTTCctatttatataatttttccCCTGGAACTTA
ACTGATATAACCCAAATGCGCAAAATTCATTCTCTTGCTACATTTTATCA
ATCAATCCCATTCATGCTCCCTAGTTGATCGCTACTAAGCACTTGGGAGC
CATATCTTAATCTTCTGCACCGGCTTTTGGAAAGTTTGCTACTTCTTTCA
ATGTGGGAGGATTGACCGACATTTTACAACGTAGCACTTGTTCAAAACGT
TTTTATGATGATTATACTCTTACAAAAAAATGGCTCTTTACCTGTTTTTT
ATGCAGTCTTAATTCTCCACTTCGATCTTAATATCCCGGGACATTTAAAT
CCGAAAAGTCTTTATTTCCTGGAAAACTAGGAATTAAAAGTCCTAATTTC
CCAGGTTTCAATTTACTGCGGCACCGGTGTTATGTTATTTAACAGATTTG
AATTGTGATTATACTTTTGTCCCGCCTtctttattatatttttgttcGCT
CTTTATCTTAGTACGCCAACCAACTTAATGGATGGTAATATTTATGTGAA
TGACAAAACTGAAAACAACATTCAGACACTGGAAAAGTTAGCTTTCTCCA
ATGCTATGGCTCTTTCAGGTAATTCAAATATTAAGACCCAACCTTTTTTA
AGCGAGGTCACATTTCATGTCGTCAAGCGTCTGACTTAAAGGGACAGTAG
GACGGTGCAGGACGGTGTGGTAAGGAATAATACTGGCCGGTGTTttgggc
tgtactgagaaatattgcccgaggtcaagtaacgatcAAGCTTGCGAGGC
TGATGCATTGaccgaaaaaaaccggtcattattgtatttgttaaccgttt
cctttaacttcgattgatttttcgccctttatgcaaaaaaaaacgaaaaa
aagcgagaaaacaagcgaaaagagatcaaaattgttttaatttcttagtc
aaaaatgaaacttgagacaaatgatgtcaacgcagtgttcattttccttt
gaaaaaaactgacgtcacagTGAATTTGCCTAACGACGGACAACTCTGTG
CAGTGTaggcactgacctttatatacactggaccaagcttctcaatcccg
gccaagctaAATTTTTGATAGGTGTCTTTTGAAAAGTGGTAGCccaatgg
cggcactactcaatagcggtgtaaatacATCGACAgtgctagatctactt
tccctcgaaaacttttgatgatgtagcgtcGCTAGATGTTAATTTTTGAA
CCTACcacggaggtcctttaaattaaccgacgttcgttcgttcgttcgtt
cgtctgttactagcttttctcgggattggctcattagttttttctgatat
tttgtacagtgatgcaaaatggtgattcccaaaaagtgacggagcccgat
tttcgaaaaaagtttgggccaaaaagtgcctaaaaatgggtttttttgga
ctgAGTGTGAAAttgactcattagtttttcagattttttgcataaagata
gaggcaaggttctctaaaaagtggctcaagaagttttttcggaaaattct
ttttgtcgtaaaaatcggattttcttatttggggaaattcccttatgtaa
tttttagggaaaatgagaatttctcgagattggcttggtattttttcgta
ttttcgtattttttttcgtattttttctgatacaaatttgatactgtctt
ttctgacgttttttgactgttttttataatgacttttgactttatacctc
catatcttgataactacttttccaaaattagaaaatgatacattaaaatt
taagtttgcctttcctctttaccacgaaaagagaatttagttaaaattca
attttttcggacacagttaccctccaaactcttatactttttcgtgggtc
acccggtatattaccattttatatcactaaatatcgcaaaaaataatttt
tggggcaaatctgggccaaatttaaaaactcacggtaatctattcaagct
gctACATCACACTtttttactctcttgctatttgtcctatttttatgtGA
TTCTCatcaccaggtaggtccattcagcatgttgcttgttaacactgcaa
tggcgtTTTTACGGctaaaaaaaactttggatgGCGGATgacggatatag
cttggtccagggatatataaaggtcagtgagtgTAGGCCCGTcatcatgc
gaaaagaaccaattgcattgcgcaaaaagccgtgtagcctgcttcgaaaa
agtaaccggttaataATATCATATAACACCTACCCAAAACACGTATTACT
GACAACTCTAGTTAGTTGACGAAATTCGGTCTCGAAATTAAAATTGTTAG
AAGAACAATTGACTATGGGATGCACAAATTGTATCGAATTGTATGCTTAT
GAATTCGACGTTGAAAGGGAGATTCTACGGGTAAGGGGTTGGTCTCCTGC
TAATAGATCTTATTTTCCGTTTgatgtttgtgtgaaaaccaggCGGTCGA
TAAACGGTTAATAAAGTCTTCTTTCATATAGATCTATTAGAAACTGATTG
AAATACCTTTTTAGTTCGATTGAGTATGTGGGAAACAGCGGTGGATACCT
TTTCAAATTCTATGAAGCAGATACCAGAGGTATTTtacttttctattttc
attcgTATTTCGAGTTTGGTAAATATTTAAGCATACTATTAATAATAGAG
ATTAACTCTAGACTACTGATCGTTATAAACCCTGGACTAAGCAATATCCG
CCATTTTTGATCGgggtatttttgaaaattgtactcGCAAAGTATAAGTG
TTAAGAGTGTTGgagtgttaaaaattaatggCGAACGGCACTACATCAGC
acaagttttgaaaatatagacctagcgctctcgatgcattttacACCGCT
CTCGAGTAATGCTACCATCAGTCTACCACTTTCctaaaaactccaatcaa
agatttttgtTGGTCGGGATTGAGAAACTGCAGGGTCAATTAGACCAAAA
ACAAAAGTAGACGGTAAAcgctactttaggcgtacaaactttcgcgagca
gaaactttcgcgaatttcgcgaattttggcccttttcgcgaaagtaaatg
tatttaaaaattctaggaagggccttTCGCGAAAgcaagtcaaaggacaa
atgttttaagccaatccaagaagtatttgtccctctaagccattttttca
tgtgaaaattctcaattctacgtcttgattcgcgaaagtttatgctcgcg
aaatatatttttccgttaaattcgcgacagtaaatgtcgtgaatttcgcg
atttttcgtcctcgcgaaagtttgtgctcgcgaaatatatttttccgtta
aattcgcgacagtaaatgtcgtgaatttcgcgatttttcgtcctcgcgaa
agtttgtgctcgcgaaatatatttttccgttaaattcgcgacagtaaatg
tcgtgaatttcgcgatttttcgtcctcgcgaaagtttgtgctcgcgaaat
atatttttccgttaaattcgcgacagtaaatgtcgtgaatttcgcgattt
ttcgtcctcgcgaaagtttctgctcgcgaaagtttgtacgcctaaagtaa
ttgTTGATAATTATATGTGAGCTTCTTCATAATTGGTGCCTTCAAAACTA
ATTGTGGACTCTTGCTTAATTTTTGTTGTGGTTCATTATTCTTTATAGCA
TATGAAGGAGGGTCATAAAGTAAACATGTCACGACAAGAAGTTTTACGGA
AAATTGGAGAACTTCTTACACTCAGGTAAATTTTTGACACTGAAGCATTA
TCTTAATTCTTATCATAACTTGCAGGCTCTAGGGGGTTGATTGTATTTCA
TAAACGAACTCAGTTTTTTTCGTTTCCCGTTCTTTCCTCTATCCTTTCGT
TTTCACTCCTATTTTTTCCGTGTTAAATCTTTTCAATCTTTTAGCTTCCC
ccatacatattttttttattataagattCGCTTCTAACATCTAGCTTTAA
ATTCATAGATATTCGCTTTAATTATGTTGATTAACCCAAAAAGGTCTAGA
GCCGAAGGCTAGATTCTAATCCATTATGTAAGATTTGATGCCACTCATTT
CCTTCATAAAGTTGCGCGGCCCGCTTAGTTTTTACATCGTACACTTAACA
TTTAACATTTACCTCCAGAATTCGAAAAACgcgaaaacaagaaaaatgac
aGATTCGACCTTTCATCTGAGCTACGGTGCAGCTTTAAGGTATCACTTGC
CTATGAAAGGTCGAAGATTCCTCTCAAGCCTTTGGCTATTTATCCTTGGG
CTAACCGCTTAACAATGATtacaaaaaagaatttcttaaTATATTTTCTT
AACCTGGGATAAAATATTTGACAATTACCCTCATCATTTTCTCTCAACAG
GCATCAAATCAACTTGTATTCAGATTTGTTGGCAACACCTGATTTCTTTT
GGGACCGTGACGAACTAGAAAAATTGTACGCCAAGACGTGCACTTATTTG
GAAGTTGGTAAACGAACCAAGGTAATGCCTTGTATGTATACAGACCCAAT
ATCTacgctaatttcaaaattcattgccgtagagggtctgttgtcattgt
cttttctcatttgagatttttcgaaccgaccgctgcgatgaagtgttggt
gagagagggtagacgatgagagaagtttTGCTATCTATAAATCATACTTC
Tttgcagaggtctccgtacgggaattttttatcaaagagtcaatgcgcac
agagtgtactacgaagcgataaacgtgagatacactctggtacagtgTAG
GTAATGCCCTGCGTAAATTATAGTCAGAATCAACTTGGTTTGTTGTTTTA
CGAGTAAGTAAGTTAATGCGTATGCTCGGTCGGctagaaaaaggggaaaa
tatACAAATTTGTGCAAAACTCCCCTTCGAGAAagacgttaatttttttt
tgggaatTCACGAACTCTTTTCCACTGTTGTTGCCTTTGTAAAACTTATA
ATCCCGATTTCGTGATGTAGAAAAAATGATATATTACAAACACAAATCCA
CAATTAGACCTGTTACTTTTTCATTCCTTCCTTCTTCTGAAATTAATTAA
TAATTCACTACCAGGTGATGAATGAGAAATTGAATTTATGTACGGAGTTG
GTAGAGATGTTGAGAAGTCATTTGAATGAACAACATTCGCATCGATTGGA
ATGGATGATCATTTGGCTTATCACCATTGAGGTAGCCAACCTTTTGTATT
TGTAGAAGTTAATCTTAGTTAGCCCCGATGACTCTTCAAATCGTTTCAAT
GTTTTTTCGGAGGCCttttaaattaacctttgttcgcTTGTCCATTCAtg
tgttcgtctgttaccattTTTTGGAACATTAGTCTTTTCTGTTTCTTTCC
CAaagtgatgtaaaatggcaGTACTTAAAAagtgtgacggagcccgatta
gttttttctcttttttttgcataaatctttaaaaagtggctgaagccGTT
TTTCCTGAAATCATTTTAAATTGATGACTCAAAGAGACTGCAGGtaaata
atttgtttttgtttgttctgATTTCAGGTTGTATTTGAAGTCGCCCATTG
GATAGACAGAGTACTATAGAAAATTAGAAGATATGGTGACCAACAGCAAG
GACCATATATACCTGACCAATCTCTAATCTTATCTTTTGAATCAATACCT
TAAGTATATATTAgggaaacaattttttaattcggtatTTTTAAAGATAT
AGCTTTATTTGATACATTTCGCTCagaattttagatattttttattactt
ttacaATTAACTCTTTATAACAATTATATTATAATAGGCAACTATGAATT
CACTCagaaaattggataaaaa

Coding sequence (CDS) from alignment at sc0000437:166293..175664+

>TCONS_00022948 ID=TCONS_00022948|Name=TCONS_00022948|organism=Clytia hemisphaerica|type=CDS|length=6777bp|location=Sequence derived from alignment at sc0000437:166293..175664+ (Clytia hemisphaerica)
ttagaTGCAATTGATGTATTGTAcattaaaaagaagaaagatgaaGAAGA
TTGCCAATCCGAAATCTTCCTTTTTAGACGTCTTGGAACATTTGTTGGAT
GGAATGTTCAAGAAAATGAGATACACAAACTTCGACAAGTGTTTCAAGAA
TTTGAATTATCACCATACAAAGAAGATGATATCCTTGAAGAAAGTGAACT
CATGGATTTTGAAATGATTTCGGATACGCCAACCAACTTAATGGATGGTA
ATATTTATGTGAATGACAAAACTGAAAACAACATTCAGACACTGGAAAAG
TTAGCTTTCTCCAATGCTATGGCTCTTTCAGTTCGATTGAGTATGTGGGA
AACAGCGGTGGATACCTTTTCAAATTCTATGAAGCAGATACCAGAGCATA
TGAAGGAGGGTCATAAAGTAAACATGTCACGACAAGAAGTTTTACGGAAA
ATTGGAGAACTTCTTACACTCAGGCATCAAATCAACTTGTATTCAGATTT
GTTGGCAACACCTGATTTCTTTTGGGACCGTGACGAACTAGAAAAATTGT
ACGCCAAGACGTGCACTTATTTGGAAGTTGGTAAACGAACCAAGGTGATG
AATGAGAAATTGAATTTATGTACGGAGTTGGTAGAGATGTTGAGAAGTCA
TTTGAATGAACAACATTCGCATCGATTGGAATGGATGATCATTTGGCTTA
TCACCATTGAGGTTGTATTTGAAGTCGCCCATTGGATAGACAGAGTACTA
TAGttagaTGCAATTGATGTATTGTAcattaaaaagaagaaagatgaaGA
AGATTGCCAATCCGAAATCTTCCTTTTTAGACGTCTTGGAACATTTGTTG
GATGGAATGTTCAAGAAAATGAGATACACAAACTTCGACAAGTGTTTCAA
GAATTTGAATTATCACCATACAAAGAAGATGATATCCTTGAAGAAAGTGA
ACTCATGGATTTTGAAATGATTTCGGATACGCCAACCAACTTAATGGATG
GTAATATTTATGTGAATGACAAAACTGAAAACAACATTCAGACACTGGAA
AAGTTAGCTTTCTCCAATGCTATGGCTCTTTCAGTTCGATTGAGTATGTG
GGAAACAGCGGTGGATACCTTTTCAAATTCTATGAAGCAGATACCAGAGC
ATATGAAGGAGGGTCATAAAGTAAACATGTCACGACAAGAAGTTTTACGG
AAAATTGGAGAACTTCTTACACTCAGGCATCAAATCAACTTGTATTCAGA
TTTGTTGGCAACACCTGATTTCTTTTGGGACCGTGACGAACTAGAAAAAT
TGTACGCCAAGACGTGCACTTATTTGGAAGTTGGTAAACGAACCAAGGTG
ATGAATGAGAAATTGAATTTATGTACGGAGTTGGTAGAGATGTTGAGAAG
TCATTTGAATGAACAACATTCGCATCGATTGGAATGGATGATCATTTGGC
TTATCACCATTGAGGTTGTATTTGAAGTCGCCCATTGGATAGACAGAGTA
CTATAGttagaTGCAATTGATGTATTGTAcattaaaaagaagaaagatga
aGAAGATTGCCAATCCGAAATCTTCCTTTTTAGACGTCTTGGAACATTTG
TTGGATGGAATGTTCAAGAAAATGAGATACACAAACTTCGACAAGTGTTT
CAAGAATTTGAATTATCACCATACAAAGAAGATGATATCCTTGAAGAAAG
TGAACTCATGGATTTTGAAATGATTTCGGATACGCCAACCAACTTAATGG
ATGGTAATATTTATGTGAATGACAAAACTGAAAACAACATTCAGACACTG
GAAAAGTTAGCTTTCTCCAATGCTATGGCTCTTTCAGTTCGATTGAGTAT
GTGGGAAACAGCGGTGGATACCTTTTCAAATTCTATGAAGCAGATACCAG
AGCATATGAAGGAGGGTCATAAAGTAAACATGTCACGACAAGAAGTTTTA
CGGAAAATTGGAGAACTTCTTACACTCAGGCATCAAATCAACTTGTATTC
AGATTTGTTGGCAACACCTGATTTCTTTTGGGACCGTGACGAACTAGAAA
AATTGTACGCCAAGACGTGCACTTATTTGGAAGTTGGTAAACGAACCAAG
GTGATGAATGAGAAATTGAATTTATGTACGGAGTTGGTAGAGATGTTGAG
AAGTCATTTGAATGAACAACATTCGCATCGATTGGAATGGATGATCATTT
GGCTTATCACCATTGAGGTTGTATTTGAAGTCGCCCATTGGATAGACAGA
GTACTATAGttagaTGCAATTGATGTATTGTAcattaaaaagaagaaaga
tgaaGAAGATTGCCAATCCGAAATCTTCCTTTTTAGACGTCTTGGAACAT
TTGTTGGATGGAATGTTCAAGAAAATGAGATACACAAACTTCGACAAGTG
TTTCAAGAATTTGAATTATCACCATACAAAGAAGATGATATCCTTGAAGA
AAGTGAACTCATGGATTTTGAAATGATTTCGGATACGCCAACCAACTTAA
TGGATGGTAATATTTATGTGAATGACAAAACTGAAAACAACATTCAGACA
CTGGAAAAGTTAGCTTTCTCCAATGCTATGGCTCTTTCAGTTCGATTGAG
TATGTGGGAAACAGCGGTGGATACCTTTTCAAATTCTATGAAGCAGATAC
CAGAGCATATGAAGGAGGGTCATAAAGTAAACATGTCACGACAAGAAGTT
TTACGGAAAATTGGAGAACTTCTTACACTCAGGCATCAAATCAACTTGTA
TTCAGATTTGTTGGCAACACCTGATTTCTTTTGGGACCGTGACGAACTAG
AAAAATTGTACGCCAAGACGTGCACTTATTTGGAAGTTGGTAAACGAACC
AAGGTGATGAATGAGAAATTGAATTTATGTACGGAGTTGGTAGAGATGTT
GAGAAGTCATTTGAATGAACAACATTCGCATCGATTGGAATGGATGATCA
TTTGGCTTATCACCATTGAGGTTGTATTTGAAGTCGCCCATTGGATAGAC
AGAGTACTATAGttagaTGCAATTGATGTATTGTAcattaaaaagaagaa
agatgaaGAAGATTGCCAATCCGAAATCTTCCTTTTTAGACGTCTTGGAA
CATTTGTTGGATGGAATGTTCAAGAAAATGAGATACACAAACTTCGACAA
GTGTTTCAAGAATTTGAATTATCACCATACAAAGAAGATGATATCCTTGA
AGAAAGTGAACTCATGGATTTTGAAATGATTTCGGATACGCCAACCAACT
TAATGGATGGTAATATTTATGTGAATGACAAAACTGAAAACAACATTCAG
ACACTGGAAAAGTTAGCTTTCTCCAATGCTATGGCTCTTTCAGTTCGATT
GAGTATGTGGGAAACAGCGGTGGATACCTTTTCAAATTCTATGAAGCAGA
TACCAGAGCATATGAAGGAGGGTCATAAAGTAAACATGTCACGACAAGAA
GTTTTACGGAAAATTGGAGAACTTCTTACACTCAGGCATCAAATCAACTT
GTATTCAGATTTGTTGGCAACACCTGATTTCTTTTGGGACCGTGACGAAC
TAGAAAAATTGTACGCCAAGACGTGCACTTATTTGGAAGTTGGTAAACGA
ACCAAGGTGATGAATGAGAAATTGAATTTATGTACGGAGTTGGTAGAGAT
GTTGAGAAGTCATTTGAATGAACAACATTCGCATCGATTGGAATGGATGA
TCATTTGGCTTATCACCATTGAGGTTGTATTTGAAGTCGCCCATTGGATA
GACAGAGTACTATAGttagaTGCAATTGATGTATTGTAcattaaaaagaa
gaaagatgaaGAAGATTGCCAATCCGAAATCTTCCTTTTTAGACGTCTTG
GAACATTTGTTGGATGGAATGTTCAAGAAAATGAGATACACAAACTTCGA
CAAGTGTTTCAAGAATTTGAATTATCACCATACAAAGAAGATGATATCCT
TGAAGAAAGTGAACTCATGGATTTTGAAATGATTTCGGATACGCCAACCA
ACTTAATGGATGGTAATATTTATGTGAATGACAAAACTGAAAACAACATT
CAGACACTGGAAAAGTTAGCTTTCTCCAATGCTATGGCTCTTTCAGTTCG
ATTGAGTATGTGGGAAACAGCGGTGGATACCTTTTCAAATTCTATGAAGC
AGATACCAGAGCATATGAAGGAGGGTCATAAAGTAAACATGTCACGACAA
GAAGTTTTACGGAAAATTGGAGAACTTCTTACACTCAGGCATCAAATCAA
CTTGTATTCAGATTTGTTGGCAACACCTGATTTCTTTTGGGACCGTGACG
AACTAGAAAAATTGTACGCCAAGACGTGCACTTATTTGGAAGTTGGTAAA
CGAACCAAGGTGATGAATGAGAAATTGAATTTATGTACGGAGTTGGTAGA
GATGTTGAGAAGTCATTTGAATGAACAACATTCGCATCGATTGGAATGGA
TGATCATTTGGCTTATCACCATTGAGGTTGTATTTGAAGTCGCCCATTGG
ATAGACAGAGTACTATAGttagaTGCAATTGATGTATTGTAcattaaaaa
gaagaaagatgaaGAAGATTGCCAATCCGAAATCTTCCTTTTTAGACGTC
TTGGAACATTTGTTGGATGGAATGTTCAAGAAAATGAGATACACAAACTT
CGACAAGTGTTTCAAGAATTTGAATTATCACCATACAAAGAAGATGATAT
CCTTGAAGAAAGTGAACTCATGGATTTTGAAATGATTTCGGATACGCCAA
CCAACTTAATGGATGGTAATATTTATGTGAATGACAAAACTGAAAACAAC
ATTCAGACACTGGAAAAGTTAGCTTTCTCCAATGCTATGGCTCTTTCAGT
TCGATTGAGTATGTGGGAAACAGCGGTGGATACCTTTTCAAATTCTATGA
AGCAGATACCAGAGCATATGAAGGAGGGTCATAAAGTAAACATGTCACGA
CAAGAAGTTTTACGGAAAATTGGAGAACTTCTTACACTCAGGCATCAAAT
CAACTTGTATTCAGATTTGTTGGCAACACCTGATTTCTTTTGGGACCGTG
ACGAACTAGAAAAATTGTACGCCAAGACGTGCACTTATTTGGAAGTTGGT
AAACGAACCAAGGTGATGAATGAGAAATTGAATTTATGTACGGAGTTGGT
AGAGATGTTGAGAAGTCATTTGAATGAACAACATTCGCATCGATTGGAAT
GGATGATCATTTGGCTTATCACCATTGAGGTTGTATTTGAAGTCGCCCAT
TGGATAGACAGAGTACTATAGttagaTGCAATTGATGTATTGTAcattaa
aaagaagaaagatgaaGAAGATTGCCAATCCGAAATCTTCCTTTTTAGAC
GTCTTGGAACATTTGTTGGATGGAATGTTCAAGAAAATGAGATACACAAA
CTTCGACAAGTGTTTCAAGAATTTGAATTATCACCATACAAAGAAGATGA
TATCCTTGAAGAAAGTGAACTCATGGATTTTGAAATGATTTCGGATACGC
CAACCAACTTAATGGATGGTAATATTTATGTGAATGACAAAACTGAAAAC
AACATTCAGACACTGGAAAAGTTAGCTTTCTCCAATGCTATGGCTCTTTC
AGTTCGATTGAGTATGTGGGAAACAGCGGTGGATACCTTTTCAAATTCTA
TGAAGCAGATACCAGAGCATATGAAGGAGGGTCATAAAGTAAACATGTCA
CGACAAGAAGTTTTACGGAAAATTGGAGAACTTCTTACACTCAGGCATCA
AATCAACTTGTATTCAGATTTGTTGGCAACACCTGATTTCTTTTGGGACC
GTGACGAACTAGAAAAATTGTACGCCAAGACGTGCACTTATTTGGAAGTT
GGTAAACGAACCAAGGTGATGAATGAGAAATTGAATTTATGTACGGAGTT
GGTAGAGATGTTGAGAAGTCATTTGAATGAACAACATTCGCATCGATTGG
AATGGATGATCATTTGGCTTATCACCATTGAGGTTGTATTTGAAGTCGCC
CATTGGATAGACAGAGTACTATAGttagaTGCAATTGATGTATTGTAcat
taaaaagaagaaagatgaaGAAGATTGCCAATCCGAAATCTTCCTTTTTA
GACGTCTTGGAACATTTGTTGGATGGAATGTTCAAGAAAATGAGATACAC
AAACTTCGACAAGTGTTTCAAGAATTTGAATTATCACCATACAAAGAAGA
TGATATCCTTGAAGAAAGTGAACTCATGGATTTTGAAATGATTTCGGATA
CGCCAACCAACTTAATGGATGGTAATATTTATGTGAATGACAAAACTGAA
AACAACATTCAGACACTGGAAAAGTTAGCTTTCTCCAATGCTATGGCTCT
TTCAGTTCGATTGAGTATGTGGGAAACAGCGGTGGATACCTTTTCAAATT
CTATGAAGCAGATACCAGAGCATATGAAGGAGGGTCATAAAGTAAACATG
TCACGACAAGAAGTTTTACGGAAAATTGGAGAACTTCTTACACTCAGGCA
TCAAATCAACTTGTATTCAGATTTGTTGGCAACACCTGATTTCTTTTGGG
ACCGTGACGAACTAGAAAAATTGTACGCCAAGACGTGCACTTATTTGGAA
GTTGGTAAACGAACCAAGGTGATGAATGAGAAATTGAATTTATGTACGGA
GTTGGTAGAGATGTTGAGAAGTCATTTGAATGAACAACATTCGCATCGAT
TGGAATGGATGATCATTTGGCTTATCACCATTGAGGTTGTATTTGAAGTC
GCCCATTGGATAGACAGAGTACTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012901XLOC_012901Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022948-exon-sc0000437-1491911889:166293..166370TCONS_00022948-exon-sc0000437-1491911889:166293..166370Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1510915933:166293..166370TCONS_00022948-exon-sc0000437-1510915933:166293..166370Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1575043694:166293..166370TCONS_00022948-exon-sc0000437-1575043694:166293..166370Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1491911889:166943..166985TCONS_00022948-exon-sc0000437-1491911889:166943..166985Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1510915933:166943..166985TCONS_00022948-exon-sc0000437-1510915933:166943..166985Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1575043694:166943..166985TCONS_00022948-exon-sc0000437-1575043694:166943..166985Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1491911889:167876..167979TCONS_00022948-exon-sc0000437-1491911889:167876..167979Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1510915933:167876..167979TCONS_00022948-exon-sc0000437-1510915933:167876..167979Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1575043694:167876..167979TCONS_00022948-exon-sc0000437-1575043694:167876..167979Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1491911889:170304..170410TCONS_00022948-exon-sc0000437-1491911889:170304..170410Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1510915933:170304..170410TCONS_00022948-exon-sc0000437-1510915933:170304..170410Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1575043694:170304..170410TCONS_00022948-exon-sc0000437-1575043694:170304..170410Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1491911889:172357..172421TCONS_00022948-exon-sc0000437-1491911889:172357..172421Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1510915933:172357..172421TCONS_00022948-exon-sc0000437-1510915933:172357..172421Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1575043694:172357..172421TCONS_00022948-exon-sc0000437-1575043694:172357..172421Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1491911889:173491..173567TCONS_00022948-exon-sc0000437-1491911889:173491..173567Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1510915933:173491..173567TCONS_00022948-exon-sc0000437-1510915933:173491..173567Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1575043694:173491..173567TCONS_00022948-exon-sc0000437-1575043694:173491..173567Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1491911889:174193..174313TCONS_00022948-exon-sc0000437-1491911889:174193..174313Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1510915933:174193..174313TCONS_00022948-exon-sc0000437-1510915933:174193..174313Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1575043694:174193..174313TCONS_00022948-exon-sc0000437-1575043694:174193..174313Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1491911889:174907..175023TCONS_00022948-exon-sc0000437-1491911889:174907..175023Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1510915933:174907..175023TCONS_00022948-exon-sc0000437-1510915933:174907..175023Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1575043694:174907..175023TCONS_00022948-exon-sc0000437-1575043694:174907..175023Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1491911889:175370..175664TCONS_00022948-exon-sc0000437-1491911889:175370..175664Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1510915933:175370..175664TCONS_00022948-exon-sc0000437-1510915933:175370..175664Clytia hemisphaericaexon
TCONS_00022948-exon-sc0000437-1575043694:175370..175664TCONS_00022948-exon-sc0000437-1575043694:175370..175664Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022948-proteinTCONS_00022948-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000437supercontigsc0000437:166293..175664 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.64558	2.818	1.00676	0.837214	3.11764	2.93737	9.54542	11.0232	12.513	9.00265	9.45887	9.41566	6.91887	5.71141	10.7291	12.3267	7.50931	8.03888	1.22876	2.47272	3.30983	3.14497	17.6374	15.4325	6.39621	7.66809	2.68229	2.79756	10.9547	12.1666
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003734DUF155
Blast
[Close]
BLAST of TCONS_00022948 vs. Swiss-Prot (Human)
Match: RMND1 (Required for meiotic nuclear division protein 1 homolog OS=Homo sapiens GN=RMND1 PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.200e-65
Identity = 108/242 (44.63%), Postives = 162/242 (66.94%), Query Frame = 2 
Query:    5 DAIDVLYIKKKKDEEDCQSEIFLFRRLGTFVGWNVQENEIHKLRQVFQEFELSPYKEDDILEESELMDFEMISDTPTNLMDGNIYVNDKTENNIQTLEKLAFSNAMALSVRLSMWETAVDTFSNSMKQIPEHMKEGHKVNMSRQEVLRKIGELLTLRHQINLYSDLLATPDFFWDRDELEKLYAKTCTYLEVGKRTKVMNEKLNLCTELVEMLRSHLNEQHSHRLEWMIIWLITIEVVFEVA 730
            DA ++L +  +   ++       F R G  V WNV++  +  + +V ++ E+ PY+   +  E+E +++  I +  + L  G I +N + + +   LEK AFSNA+ LSV+L++WE ++D F  S++ IPE +K G KV +S +EV++KIGEL  LRH+INL SD L TPDF+WDR+ LE LY KTC +L +G+R KVMNEKL  C EL +++R+HLNE+ + RLEWMI+ LITIEV+FE+ 
Sbjct:  205 DAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKDKTMKHVMKVLEKHEIQPYEIALVHWENEELNYIKI-EGQSKLHRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKKVKLSHEEVMQKIGELFALRHRINLSSDFLITPDFYWDRENLEGLYDKTCQFLSIGRRVKVMNEKLQHCMELTDLMRNHLNEKRALRLEWMIVILITIEVMFELG 445
The following BLAST results are available for this feature:
BLAST of TCONS_00022948 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RMND11.200e-6544.63Required for meiotic nuclear division protein 1 ho... [more]
back to top