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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022944 ID=TCONS_00022944|Name=TCONS_00022944|organism=Clytia hemisphaerica|type=transcript|length=2503bp
ATTATTAcaacaaaattatatttatcaTTGATAAGTAATAATCTGTCGAT
TCTtccattttattgaaaataattttttctaacaatcataaatgaaaaag
aaaaaaaattgtaaaaaattataattcaaacattttcaaatttaaaagca
atattcttaaaataaaaagttaatattttactgaaataagtaaaaaatat
tttttttgtaaaataaaacaaaaaacaaaaaagtcgcAAGCAAATACAAT
AACAAGGAAGATAATAAAAACAGaggaaattatattttattacctCGCCG
TTCATAAATAAAATCTCTACATACTTTcgtcaacaaaaaaaaaattgtaa
taaaaattttagaagAATATGCTCTTAGTCCATCTTTTTAAGAACCAGAA
AATTTAGTAGGAAAAGAAAGTACATTTATCGAAGTTACTCGCTATATATT
GGATGTGGAAATTTTCTTGCCACATGCCAAAGCTCAGAAGGTCGGAAATT
TATTTAGAGCTTTAGGGTGGGTAGCCCGGTAGCCCTAAATCATGAAATCC
GCCGTTGGAATATCAGATATAACACAAAGAGATACAACCCCTTTGGGACA
AACTTGGGTTGTGACTTTGAGGTTTTGGAGTAAGCAAATTTAGATTTTAC
CAACTGAAAGCTATTTGTAAAGACTGTGTGTCCTATATTTAAAATTGACC
TAATTAACCCGTCATAttgatattttagtgaaaagaaaagaaacagtCCG
AAATTTATAACATGATACAAAATTTACATACACAcatcaaaaaagtgaaa
ttagaaagaaaaaaaaaggagaTTACCTAGATATGTACATATAAAATTCA
TAAAAGTgcattaagaaaattttaacgTTGTAAAAAAACAACTGAAAAAC
AAATTCTATAGAATATTCTAGAAATGTTTTCTTCGAATAACTTTGTGATG
TTGATGGATGTGAAGTCATGGGTCAGGGTCAGGGGAAGGGAGCCATGACC
CCTCACTTTTTGTAGACTATGTAATTGCAGAAATGTTTCTTCGAATAACT
TTGGGATTGGGATACCTTTTATGGTGATGAGGccccaagcggttttcgtg
atgacgtgatagggactttttttgCAGCATGATGacgtgatttggaaaat
tttttcttcgtaattgcgtgatgagaggtcaaaacgtgatcgtgatttga
aagatttttaagccGTGATACTTGATTTAGACTTTTTAAAAGTGATGCGT
GATTGTCTATTTTTTTGGCCgatttgcgtgatcgtgattgaaaactaaaa
attgcgtgatatcgtgatcagagttaccgcatGGGGGCCTCGTTGGTGGT
TTTGAAGTCCAGATGACTAGGGTTGAGACCTGACGGGTCGGCCTGACCTG
ACCTGGCGCCCAAACTTCTACCCTCGGACCATTATCTGGACTAACAAGGA
GGAAAAAAGTGTAATTATTTTCACAActcttattgggactaatttgatcA
ACTTTTGATTTATTAAGGGGCAAAGAAgtcgcaatttttttttcatatcc
tTACAGGGCCTTCCAGgttaaaaaatcacttttcacttacaattaaggtc
ataatatattgagaattttggttattttaacgtttttcaagatttaaagt
tctggcgagaaagtcgattttgggctatctttttaatgtaatcgaatatt
tcaatttgggaggggttggcagacttccaggctatattctgagtcttatg
taagtcttaagtcttatgttaaaactcagagttaaaactctacccttcca
acctactttagagcacttacaaatcgattgtggttcaaaaacttcccggt
gaatttcccttttttctcaaatattatgaccttgattgtagtcgGGACTT
GAAGAATTTAACACATAAGATAGCAACAATAAAAGGAAAAGCTAAGATCA
ATAACTATAcctatacctatatacctaaaAGACATGTCCTTATACAAATA
TTCCAAAGCAGTAGTAgtataataaaatatttctatataaaaaatatcac
aaataaAGCATTTCACCAACAAAAAAAATCCATTTCCATTTCAACTTAAG
AGCCACTATCTTGAGCTCTTGAACCGATAAATAGAAGTCGGGACAAGTTA
TGAactataaaaaaattcttacaaCTAACTTTTCATCAATGTTTCCCGTC
TTTGCTTCTGGCTGACAGGCTTCCGTCTATTTTTTTCTGTCGTCGGGCGG
GCGAGTACGAGCCCACCCGCTTAAAGGCGGAAAAAAGTCCTGAGCCACTA
CTTGCACCCGTATCAGTAGTCGCCGATATGGCGTTTAATGAGTTTGAGCT
ACTCGACGTGCAGATGGCTACATCATCTACCGATGaaggcgctttaaaga
tttgtcCTGATGATGAACGCCCTTCTGAGGAGAGGGCGACAGGAGCGGAT
TGATCCAAAACAGTCGATAAGAAACGAGCAAACATTTGGGGTGCTGTTTG
GGG Run BLAST on NCBI transcript from alignment at sc0000437:30827..33849+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022944 ID=TCONS_00022944|Name=TCONS_00022944|organism=Clytia hemisphaerica|type=transcript|length=3023bp|location=Sequence derived from alignment at sc0000437:30827..33849+ (Clytia hemisphaerica)
ATTATTAcaacaaaattatatttatcaTTGATAAGTAATAATCTGTCGAT
TCTtccattttattgaaaataattttttctaacaatcataaatgaaaaag
aaaaaaaattgtaaaaaattataattcaaacattttcaaatttaaaagca
atattcttaaaataaaaagttaatattttactgaaataagtaaaaaatat
tttttttgtaaaataaaacaaaaaacaaaaaagtcgcAAGCAAATACAAT
AACAAGGAAGATAATAAAAACAGaggaaattatattttattacctCGCCG
TTCATAAATAAAATCTCTACATACTTTcgtcaacaaaaaaaaaattgtaa
taaaaattttagaagAATATGCTCTTAGTCCATCTTTTTAAGAACCAGAA
AATTTAGTAGGAAAAGAAAGTACATTTATCGAAGTTACTCGCTATATATT
GGATGTGGAAATTTTCTTGCCACATGCCAAAGCTCAGAAGGTCGGAAATT
TATTTAGAGCTTTAGGGTGGGTAGCCCGGTAGCCCTAAATCATGAAATCC
GCCGTTGGAATATCAGATATAACACAAAGAGATACAACCCCTTTGGGACA
AACTTGGGTTGTGACTTTGAGGTTTTGGAGTAAGCAAATTTAGATTTTAC
CAACTGAAAGCTATTTGTAAAGACTGTGTGTCCTATATTTAAAATTGACC
TAATTAACCCGTCATAttgatattttagtgaaaagaaaagaaacagtCCG
AAATTTATAACATGATACAAAATTTACATACACAcatcaaaaaagtgaaa
ttagaaagaaaaaaaaaggagaTTACCTAGATATGTACATATAAAATTCA
TAAAAGTGCATNattgaaataaaaattttagaagAATATGCTCTTAGTCC
ATCTTTTTAAGAACCAGAAAATTTAGCAGGAAAAGAAAGTACATTTATCG
AAGTTACTCGCTATATATTGGATGTGGAAATTTTCTTGCAACATGCCAAA
GCTCAGAAGGTCGGAAATTTATTTAGAGCTTTAGGGTGGATAGCCCGGTA
GCCCTAAATCATGAAATCCGCCGTTGGAATATCAGATATAACACAAAGAG
ATACAACCCCTTTGGGACAAACGTGGATTGTGGCTTTGAGGTTTTGGAGT
AAGCAAATTTAGATTTTACCAACTGAAAGCTATTTGTAAAGACTGTGTGT
CCTATATTTAAAATTGACCTATTTAACCCGTCATAttgatattttagtga
aaagatAAGAAACAGTCAGAAATTTATAACATGATACAAAATTTACATAC
ACAcatcaaaaaagtgaaattagaaaggaaaaaaaaaagagattacCTAG
ATATGTACATATAAAATTCATAAAAGTgcattaagaaaattttaacgTTG
TAAAAAAACAACTGAAAAACAAATTCTATAGAATATTCTAGAAATGTTTT
CTTCGAATAACTTTGTGATGTTGATGGATGTGAAGTCATGGGTCAGGGTC
AGGGGAAGGGAGCCATGACCCCTCACTTTTTGTAGACTATGTAATTGCAG
AAATGTTTCTTCGAATAACTTTGGGATTGGGATACCTTTTATGGTGATGA
GGccccaagcggttttcgtgatgacgtgatagggactttttttgCAGCAT
GATGacgtgatttggaaaattttttcttcgtaattgcgtgatgagaggtc
aaaacgtgatcgtgatttgaaagatttttaagccGTGATACTTGATTTAG
ACTTTTTAAAAGTGATGCGTGATTGTCTATTTTTTTGGCCgatttgcgtg
atcgtgattgaaaactaaaaattgcgtgatatcgtgatcagagttaccgc
atGGGGGCCTCGTTGGTGGTTTTGAAGTCCAGATGACTAGGGTTGAGACC
TGACGGGTCGGCCTGACCTGACCTGGCGCCCAAACTTCTACCCTCGGACC
ATTATCTGGACTAACAAGGAGGAAAAAAGTGTAATTATTTTCACAActct
tattgggactaatttgatcAACTTTTGATTTATTAAGGGGCAAAGAAgtc
gcaatttttttttcatatcctTACAGGGCCTTCCAGgttaaaaaatcact
tttcacttacaattaaggtcataatatattgagaattttggttattttaa
cgtttttcaagatttaaagttctggcgagaaagtcgattttgggctatct
ttttaatgtaatcgaatatttcaatttgggaggggttggcagacttccag
gctatattctgagtcttatgtaagtcttaagtcttatgttaaaactcaga
gttaaaactctacccttccaacctactttagagcacttacaaatcgattg
tggttcaaaaacttcccggtgaatttcccttttttctcaaatattatgac
cttgattgtagtcgGGACTTGAAGAATTTAACACATAAGATAGCAACAAT
AAAAGGAAAAGCTAAGATCAATAACTATAcctatacctatatacctaaaA
GACATGTCCTTATACAAATATTCCAAAGCAGTAGTAgtataataaaatat
ttctatataaaaaatatcacaaataaAGCATTTCACCAACAAAAAAAATC
CATTTCCATTTCAACTTAAGAGCCACTATCTTGAGCTCTTGAACCGATAA
ATAGAAGTCGGGACAAGTTATGAactataaaaaaattcttacaaCTAACT
TTTCATCAATGTTTCCCGTCTTTGCTTCTGGCTGACAGGCTTCCGTCTAT
TTTTTTCTGTCGTCGGGCGGGCGAGTACGAGCCCACCCGCTTAAAGGCGG
AAAAAAGTCCTGAGCCACTACTTGCACCCGTATCAGTAGTCGCCGATATG
GCGTTTAATGAGTTTGAGCTACTCGACGTGCAGATGGCTACATCATCTAC
CGATGaaggcgctttaaagatttgtcCTGATGATGAACGCCCTTCTGAGG
AGAGGGCGACAGGAGCGGATTGATCCAAAACAGTCGATAAGAAACGAGCA
AACATTTGGGGTGCTGTTTGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022944-exon-sc0000437-1491911889:30827..31664 | TCONS_00022944-exon-sc0000437-1491911889:30827..31664 | Clytia hemisphaerica | exon |
| TCONS_00022944-exon-sc0000437-1510915933:30827..31664 | TCONS_00022944-exon-sc0000437-1510915933:30827..31664 | Clytia hemisphaerica | exon |
| TCONS_00022944-exon-sc0000437-1575043694:30827..31664 | TCONS_00022944-exon-sc0000437-1575043694:30827..31664 | Clytia hemisphaerica | exon |
| TCONS_00022944-exon-sc0000437-1491911889:32185..33849 | TCONS_00022944-exon-sc0000437-1491911889:32185..33849 | Clytia hemisphaerica | exon |
| TCONS_00022944-exon-sc0000437-1510915933:32185..33849 | TCONS_00022944-exon-sc0000437-1510915933:32185..33849 | Clytia hemisphaerica | exon |
| TCONS_00022944-exon-sc0000437-1575043694:32185..33849 | TCONS_00022944-exon-sc0000437-1575043694:32185..33849 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000437 | supercontig | sc0000437:30827..33849 + |
Blast
The following BLAST results are available for this feature:
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