TCONS_00022942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022942
Unique NameTCONS_00022942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length943

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022942 ID=TCONS_00022942|Name=TCONS_00022942|organism=Clytia hemisphaerica|type=transcript|length=943bp
GGAAAATTGCTCTAaaattcttaggttcagttgtcAAATTCCACGATGGT
GGTGTTCTTAGCTAGTTCctaattttttgaataattttatcATAATAGTA
TAataagtatattcttataaaagaagaattGCTTATCTTTGATTTTGTGA
AGAAAAGTTCTTCACAAAAAATCAATTGAAACAACCCAAAATGACTTTAA
GTTGCAGCAAAATATGACAAAGTAAAAGCCAGACTCCAACACATATTGTG
GTTTTAGGGCTAGGAATGTTACCCGCCGCACACGTGTAAAAGTAATTGCA
GTTGACTGTGATTGACAATATTTGACCTTTTATTCTATCACTTTCAGGTA
AACACAAAATATAGATTGGTAATAATGTCAAGCCCAAAAAATGATCAGGG
TCTACCCTTTTATTCAAAGCTTATGTTTTATGGTATGAATGGATTTTTTC
TTGAGATTGTCTTTACAGCAATATGGTATTTTGTTGACCCAGCTTACAAT
CATGGCTGGAAACTTCATGGTTCAACTTCATTATGGTCTTTTCCAATTTA
TGGAATCTCAATCTATGTCCTAGAAAAGATATCAGATACAATCAAACCAC
ATGTTTTGTTACCTTTCCGAGCTGTGATTTACATTATGTGGACCTATCTT
TGGGAATATTCTACGGGCTACATTCTTCAGAAGTTTGACGCGTGCCCTTG
GGATTACAAAGACTACACCACCTACCATCTTCATGGTTTGATCACCTTTG
ATTATGCCCCTTTATGGTTACTTGCTGTTGTTTTATGTGAAAAGGTCACC
ATTGATATAGCTCAGAATCTGAGCTATAACACGTCATCTGAAAAAGCAAa
agctaaataaataaatgggCTCTTCCTCAAAAGCTGGATaaaactaccgg
gtgcgccacaaaaaagtttctctctttataGTGAACTTTCCCA
Run BLAST on NCBI

protein sequence of TCONS_00022942-protein

>TCONS_00022942-protein ID=TCONS_00022942-protein|Name=TCONS_00022942-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MSSPKNDQGLPFYSKLMFYGMNGFFLEIVFTAIWYFVDPAYNHGWKLHGS
TSLWSFPIYGISIYVLEKISDTIKPHVLLPFRAVIYIMWTYLWEYSTGYI
LQKFDACPWDYKDYTTYHLHGLITFDYAPLWLLAVVLCEKVTIDIAQNLS
YNTSSEKAKAK
Run BLAST on NCBI

transcript from alignment at sc0000436:230735..231677

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022942 ID=TCONS_00022942|Name=TCONS_00022942|organism=Clytia hemisphaerica|type=transcript|length=943bp|location=Sequence derived from alignment at sc0000436:230735..231677 (Clytia hemisphaerica)
TGGGAAAGTTCACtataaagagagaaacttttttgtggcgcacccggtag
ttttATCCAGCTTTTGAGGAAGAGcccatttatttatttagcttTTGCTT
TTTCAGATGACGTGTTATAGCTCAGATTCTGAGCTATATCAATGGTGACC
TTTTCACATAAAACAACAGCAAGTAACCATAAAGGGGCATAATCAAAGGT
GATCAAACCATGAAGATGGTAGGTGGTGTAGTCTTTGTAATCCCAAGGGC
ACGCGTCAAACTTCTGAAGAATGTAGCCCGTAGAATATTCCCAAAGATAG
GTCCACATAATGTAAATCACAGCTCGGAAAGGTAACAAAACATGTGGTTT
GATTGTATCTGATATCTTTTCTAGGACATAGATTGAGATTCCATAAATTG
GAAAAGACCATAATGAAGTTGAACCATGAAGTTTCCAGCCATGATTGTAA
GCTGGGTCAACAAAATACCATATTGCTGTAAAGACAATCTCAAGAAAAAA
TCCATTCATACCATAAAACATAAGCTTTGAATAAAAGGGTAGACCCTGAT
CATTTTTTGGGCTTGACATTATTACCAATCTATATTTTGTGTTTACCTGA
AAGTGATAGAATAAAAGGTCAAATATTGTCAATCACAGTCAACTGCAATT
ACTTTTACACGTGTGCGGCGGGTAACATTCCTAGCCCTAAAACCACAATA
TGTGTTGGAGTCTGGCTTTTACTTTGTCATATTTTGCTGCAACTTAAAGT
CATTTTGGGTTGTTTCAATTGATTTTTTGTGAAGAACTTTTCTTCACAAA
ATCAAAGATAAGCaattcttcttttataagaatatacttatTATACTATT
ATgataaaattattcaaaaaattagGAACTAGCTAAGAACACCACCATCG
TGGAATTTgacaactgaacctaagaatttTAGAGCAATTTTCC

Coding sequence (CDS) from alignment at sc0000436:230735..231677

>TCONS_00022942 ID=TCONS_00022942|Name=TCONS_00022942|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0000436:230735..231677 (Clytia hemisphaerica)
ttatttagcttTTGCTTTTTCAGATGACGTGTTATAGCTCAGATTCTGAG
CTATATCAATGGTGACCTTTTCACATAAAACAACAGCAAGTAACCATAAA
GGGGCATAATCAAAGGTGATCAAACCATGAAGATGGTAGGTGGTGTAGTC
TTTGTAATCCCAAGGGCACGCGTCAAACTTCTGAAGAATGTAGCCCGTAG
AATATTCCCAAAGATAGGTCCACATAATGTAAATCACAGCTCGGAAAGGT
AACAAAACATGTGGTTTGATTGTATCTGATATCTTTTCTAGGACATAGAT
TGAGATTCCATAAATTGGAAAAGACCATAATGAAGTTGAACCATGAAGTT
TCCAGCCATGATTGTAAGCTGGGTCAACAAAATACCATATTGCTGTAAAG
ACAATCTCAAGAAAAAATCCATTCATACCATAAAACATAAGCTTTGAATA
AAAGGGTAGACCCTGATCATTTTTTGGGCTTGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012897XLOC_012897Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022942-proteinTCONS_00022942-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022942-exon-sc0000436-1491911889:230735..231677TCONS_00022942-exon-sc0000436-1491911889:230735..231677Clytia hemisphaericaexon
TCONS_00022942-exon-sc0000436-1510915933:230735..231677TCONS_00022942-exon-sc0000436-1510915933:230735..231677Clytia hemisphaericaexon
TCONS_00022942-exon-sc0000436-1575043694:230735..231677TCONS_00022942-exon-sc0000436-1575043694:230735..231677Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000436supercontigsc0000436:230735..231677 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.64014	4.52626	1.36854	0.642694	9.64696	4.99626	12.9877	13.2643	13.646	10.3486	7.68823	10.3341	4.98394	3.67223	2.77256	2.71971	5.40643	5.80563	2.10662	3.66155	6.7773	7.59061	11.9707	11.3911	8.0982	9.12405	7.68809	4.95235	8.26434	7.10677
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010540CmpB_TMEM229
Blast
[Close]
BLAST of TCONS_00022942 vs. Swiss-Prot (Human)
Match: T229B (Transmembrane protein 229B OS=Homo sapiens GN=TMEM229B PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.368e-31
Identity = 56/146 (38.36%), Postives = 88/146 (60.27%), Query Frame = 3 
Query:  414 SKLMFYGMNGFFLEIVFTAIWYFVDPAYNHGWKLHGSTSLWSFPIYGISIYVLEKISDTIKPHVLLPFRAVIYIMWTYLWEYSTGYILQKFDACPWDYKDYTTYHLHGLITFDYAPLWLLAVVLCEKVTIDIAQNLSYNTSSEKAK 851
            S+   Y ++G+F E++FTA W FV    N  WK  G TS+W+  IYG SI ++E++   ++    L  R +IY +WTYLWE++TG+IL++F+ACPWDY  +  +   GLIT +YA  W    ++ E+  I     L ++  +E  +
Sbjct:   11 SRWYLYAIHGYFCEVMFTAAWEFV---VNLNWKFPGVTSVWALFIYGTSILIVERMYLRLRGRCPLLLRCLIYTLWTYLWEFTTGFILRQFNACPWDYSQF-DFDFMGLITLEYAVPWFCGALIMEQFIIRNTLRLRFDKDAEPGE 152
The following BLAST results are available for this feature:
BLAST of TCONS_00022942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
T229B3.368e-3138.36Transmembrane protein 229B OS=Homo sapiens GN=TMEM... [more]
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