TCONS_00022933 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022933
Unique NameTCONS_00022933
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022933 ID=TCONS_00022933|Name=TCONS_00022933|organism=Clytia hemisphaerica|type=transcript|length=641bp
TCAAACGACTCAATATCGATCATTGGAATTCCACCAGAATCTCTACGATA
AAGAGGGATATTACGACTATCCAAAATTTTATCATACAAAAAGAAACTGC
TAGAACCAAACACACCCTATTAAAGAAATcccaaaaaataaagataaaac
gaGACTTCAACGATGAAAATTGACGTATTTACAAAACTCCATGGTGAAAT
TCAAAGGACGTCATTAGCTTAGTCGGCATTACGGTTTTGATCTTTTGTCC
ATTGATACACTgcgaaaatcaaaatattccaaATAATTTTCCTGGAGAGC
TTGATCGACCAGTTTAACGTTCGTTACTGAAATTGAACCGATGAAGACGA
CAACTGGATTGTTACTTCCATAACATAGGATTCGCCACCTTCCAAACAAG
GTACAAGCTGTGAAaagtagaaaaagtaatgagttTTGGTACAACAGTCC
AGTCTTTGTGGCTCAAGCAGAGTCCAGTATACTACGACTACGTAGTCGTT
CGAGTTATGGGGTGTTCGAGTTTTAGAGAAGAAAAATAGCCTAAGATTTT
CTcaaaggaacaagaaaaactgTTCGAGTTATATATTGTGAGACAtcagg
agacattcgagttatggagagtcGACCTGGTCGACTGTAGT
Run BLAST on NCBI

transcript from alignment at sc0000436:439..1079

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022933 ID=TCONS_00022933|Name=TCONS_00022933|organism=Clytia hemisphaerica|type=transcript|length=641bp|location=Sequence derived from alignment at sc0000436:439..1079 (Clytia hemisphaerica)
ACTACAGTCGACCAGGTCgactctccataactcgaatgtctcctgaTGTC
TCACAATATATAACTCGAAcagtttttcttgttcctttgAGAAAATCTTA
GGCTATTTTTCTTCTCTAAAACTCGAACACCCCATAACTCGAACGACTAC
GTAGTCGTAGTATACTGGACTCTGCTTGAGCCACAAAGACTGGACTGTTG
TACCAAaactcattactttttctacttTTCACAGCTTGTACCTTGTTTGG
AAGGTGGCGAATCCTATGTTATGGAAGTAACAATCCAGTTGTCGTCTTCA
TCGGTTCAATTTCAGTAACGAACGTTAAACTGGTCGATCAAGCTCTCCAG
GAAAATTATttggaatattttgattttcgcAGTGTATCAATGGACAAAAG
ATCAAAACCGTAATGCCGACTAAGCTAATGACGTCCTTTGAATTTCACCA
TGGAGTTTTGTAAATACGTCAATTTTCATCGTTGAAGTCtcgttttatct
ttattttttgggATTTCTTTAATAGGGTGTGTTTGGTTCTAGCAGTTTCT
TTTTGTATGATAAAATTTTGGATAGTCGTAATATCCCTCTTTATCGTAGA
GATTCTGGTGGAATTCCAATGATCGATATTGAGTCGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012888XLOC_012888Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022933-exon-sc0000436-1491911889:439..1079TCONS_00022933-exon-sc0000436-1491911889:439..1079Clytia hemisphaericaexon
TCONS_00022933-exon-sc0000436-1510915933:439..1079TCONS_00022933-exon-sc0000436-1510915933:439..1079Clytia hemisphaericaexon
TCONS_00022933-exon-sc0000436-1575043694:439..1079TCONS_00022933-exon-sc0000436-1575043694:439..1079Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000436supercontigsc0000436:439..1079 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.395575	0.424398	0.651186	0.192189	60.533	45.0726	29.9814	32.5058	18.763	14.0202	10.4087	10.3058	1.69377	0.730344	0.713413	0.626056	1.57949	1.86293	0.873001	1.312	1.78244	1.33183	0.539484	0.638804	0.753135	0.62654	0.837831	0.295693	0.783888	0.657802
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022933 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top