TCONS_00022923 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022923
Unique NameTCONS_00022923
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length220

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022923 ID=TCONS_00022923|Name=TCONS_00022923|organism=Clytia hemisphaerica|type=transcript|length=220bp
CCTCTAGAACTTGTTCTTGGGAAGTTAACGTGTTTACAATTCGAATCTTT
CGCGTTTTTTGAGAAAGTACACCAATACAGTAATTTTCATTCTTCCACCA
GGGTCTCCCAAAATCATTTGCCCAATCCGTCCTTGGACAAAGAGGAGGTG
TGTGTATGATACGTCCAAAAGGAGTATAGGGAAACTGACATTTGGTGATC
GGGTCTACGTACATTCGAAT
Run BLAST on NCBI

transcript from alignment at sc0000436:242822..245357-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022923 ID=TCONS_00022923|Name=TCONS_00022923|organism=Clytia hemisphaerica|type=transcript|length=2536bp|location=Sequence derived from alignment at sc0000436:242822..245357- (Clytia hemisphaerica)
CCTCTAGAACTTGTTCTTGGGAAGTTAACGTGTTTACAATTCGAATCTTT
CGCGTTTTTTGAGAAAGTACACCAATACAGTAATTTTCATTCTTCCACCA
GGGTCTCCCAAAATCATTTGCCCAATCCGTCCTTGGACAAAGAGGAGGTG
TGTGTATGATACGTCCAAAAGGAGTATAGGGAAACTGACATTTGGTGATC
GGGTCTACGTACATTCGAATCTGAAGAAAAAAGTGTGTTGTGATTTATCT
GCTAAATGTATCATACAAAAACAATCCAGAATTCTTCCATAAAATACAGC
TTTAAGTAACTTTATGTTATTTAAATCACTGCAGGGCCGGCGAATCAATT
TTGAAAGTGGAGGGGCCAAATAGTAAGTGTCTAAGGAACACAGTCAAAAA
TAAAGGGGGGTTTTGTGACATTTCTACCTTCTGTCATATCTGATACCATA
TCTGGTGGAATTTTGAGGTTACCATATCAAAACTTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGC
CTAAAAATGATTATTTATGATTTTATTCTAAATTTACCAAAAAGAGCAAT
TTTTTGACTTTCCAAAAATGTCACACAATTTTTGACTGTGTTCTAAGGAG
GCGCCACCATAGTTGGCGCCGACGGGACTTTCTTAGCAAAAAAGTGGGGT
GGCCATGGCCCCCCGGCCCCCCCCAGTTTCGCCGGCCCTGCACTGCACAC
TCAGTGAAAAGTTATTGAAAGCTGCTTTTCCTGACGAGCGGCTTTATTTT
AATTCCGATGTAGAAGATGTTCTAGTGAAGCTTGTAAAAGTACCCGGGAG
GTACTAGGGTTGACGAATGAGGGGTATGTGCGGACGGGACCTCCGAAAAC
CGACTCTTAGAGAGACTGATTTTTGCTGAAAAGGTGACCCTTAGAGAGAC
TTTTTGAATTTTTTTTTTCGATTTTTGAAAAAAGTTATACCCTTAGAGAG
ACTTTATTACATTTTTANGTCTTCCAAAATCATTCGCCCAATCCGTCCTT
GGACAAAGAGGAGGTGTGTGTATGATTCGCCCGAAAGGAGTATAGGGAAA
CTGACATTTGGTGATCGGGTCTACGTACATTCGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012885XLOC_012885Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022923-exon-sc0000436-1575043694:245169..245357TCONS_00022923-exon-sc0000436-1575043694:245169..245357Clytia hemisphaericaexon
TCONS_00022923-exon-sc0000436-1575043694:242822..242852TCONS_00022923-exon-sc0000436-1575043694:242822..242852Clytia hemisphaericaexon
TCONS_00022923-exon-sc0000436-1510915933:245169..245357TCONS_00022923-exon-sc0000436-1510915933:245169..245357Clytia hemisphaericaexon
TCONS_00022923-exon-sc0000436-1510915933:242822..242852TCONS_00022923-exon-sc0000436-1510915933:242822..242852Clytia hemisphaericaexon
TCONS_00022923-exon-sc0000436-1491911889:245169..245357TCONS_00022923-exon-sc0000436-1491911889:245169..245357Clytia hemisphaericaexon
TCONS_00022923-exon-sc0000436-1491911889:242822..242852TCONS_00022923-exon-sc0000436-1491911889:242822..242852Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000436supercontigsc0000436:242822..245357 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	3.82899	1.94825	0	2.58513	1.76823	0	0	0.177745	0	0	0	0	0	1.06742	0	0	0
Blast
[Close]
BLAST of TCONS_00022923 vs. Swiss-Prot (Human)
Match: CB5D1 (Cytochrome b5 domain-containing protein 1 OS=Homo sapiens GN=CYB5D1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.459e-25
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = -1 
Query:    2 IRMYVDPITKCQFPYTPFGRIIHTPPLCPRTDWANDFGRPWWKNENYCIGVLSQKTRKIRIVNTLTSQEQVLE 220
            IR ++DP+T C    TP GR +H PP  P +DWANDFG+PWW+   Y +G LS KTR IRI+NTLTSQE  LE
Sbjct:   80 IRKHIDPLTGCLRYCTPRGRFVHVPPQLPCSDWANDFGKPWWQGSYYEVGRLSAKTRSIRIINTLTSQEHTLE 152
The following BLAST results are available for this feature:
BLAST of TCONS_00022923 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CB5D12.459e-2558.90Cytochrome b5 domain-containing protein 1 OS=Homo ... [more]
back to top