|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022919 ID=TCONS_00022919|Name=TCONS_00022919|organism=Clytia hemisphaerica|type=transcript|length=1926bp
GACggattttcccttttttttcgaaacaaatatggtagacaAAGGAGcgg
taaataaaaaatattctccTTTCGTTGTTCTGTTGTCTGGTCAGCACTGC
TACTCATTTCTCGCTCTGTTTCAATCTTTTCACGCTTCACAAGTACTTTA
ACTCGAGGAAGATCACATACTGAAAGATTTTCACATGAAGAATTGGATTT
TATAATATGGCATGTTTGCTACTTACAAGGAAGCTTTATGGTCAACCTGT
GGTTCGGTCTTTCacgcaaaatatctcaaatgtGTCCGTGAAAACAAGAT
TGTCATTGCCAACTAGAAAGCCACAACAACTTGTGACGAGAACGTTCCAA
ACAACATCAAAGGTTCATGCAGCACCTCTTGGACCATTACTTGTCAAGTT
ATCATCGCCTTTATATCGCTTCGGATTTCTCTACCTTGGTCGAAGGCTTC
GTCAGTATTGGAATAATTTACCACCTGGTAAACGAGCAAAGTAtactaaa
atattttctaatagTCGGAATGCAATATTTGGAGGTGTTTTTGCATTCGG
TGGTTTATCAGGGTTGTATTATATTTCACATTTAGAAGAAGCGCCGGTGA
CGCATCGTAAACGGTTTATGATTTTGAATCATTCACAACTAGAGAAAGTT
GCAGCCTTTGAATGGCAGAAAATGGATGAGATGCTTGAACGAAAGAAATT
GCCACCCCATCATCCTCTATTTAAGAAAGTTTACAAAATCGTAAAGCGAA
TACTGATAGCCAATCAATCGAGAGAAGTGAACGGGATAAAATGGGAGGTC
AATGTTGTTGATTCTGATGAAGTCAACGCATTTGTTTTGGCCAATGGTCA
AATATTCGTCTTCACTGGTATACTAAAtgaaatggaaaatgaaaacgAAC
TAGCAGGTGTGCTCGGTCATGAAATTGCTCATGCTATTATGGGACATTCT
GCCGAGCTTCTTAGCTTAGCAGGATTTTTTAATGTATTTTCACTTGCGAT
TTTGACGACATTATGGGCGGTCATCCCCACTGATATCGGGGCGTTTGCCG
CTTCACTACTGCAAAATACAATTGAAGACTTGATTATTAACTTACCTTAC
TCACGAAAATTAGAGCAAGAAGCGGACGAAGTTGGTCTCTTACTGGCCGC
GCGGGCGTGCTATGATGTTCGCTACGTGCCGAGATTCTGGCATCGAATGC
ATCTAAAAGACGGGGGTGGTAGTGACGCCATCATGAAATGGTTTTCAACT
CACCCAACAAACGCCAGTCGTGTTAAACAAATTGATGAACTGATGCCGGA
AGCTCTGGAGTTGAGGTCTTCTTTCCAATGTCCACAATTACAAGAATTCT
ATGATGCTTCTCATAGGTTTAGACATGTTCGATtgatttgaccattttta
gCAGTGAATATTCTGAACTTTctgaattgattgattgatgatttagtatt
ttacaaaactttgtAACACTCGGTGGATGTAATATTTTTGATATATTCTC
TCAGTCGAAAATGCCTTCATTTACTTCACGTAGGCTTTTCATCAATTCGC
CGATGATTTTACATGTTTTTGTGAGGCTTCTGTAAACAAACTTTCAGTAG
TAGCGTGGTGACTTAGGCAAGTACCTCACCAAAAAGAAGGATTTTTTCAT
TCTGTAACTTACTTCTCAGAGAAAAGGCCGTGAAATTGCCTGCTTCGTTA
ACACTTCCCCTTTTCCCTGCTAACACGCTACTGCTAACTCTCTAAAATAG
TATTATAGTTTAAAGTAAAGGATAGCATATTTAGAATATTTTGTTCagtt
tcaattcaattttgtaccattttgtaaattttatgatttttgtataGGCC
TAGGTGTTTTTACACAACGTGATGTAGTGGGAATCTAAAAagagataaat
gttttttttctaactCATTCCCGGAT Run BLAST on NCBI transcript from alignment at sc0000436:175570..181452- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022919 ID=TCONS_00022919|Name=TCONS_00022919|organism=Clytia hemisphaerica|type=transcript|length=5883bp|location=Sequence derived from alignment at sc0000436:175570..181452- (Clytia hemisphaerica)
GACGGATTTTCCCTTTTTTTTCGAAACAAATATGGTAGACAAAGGAGCGG
TAAATAAAAAATATTCTCCTTTCGTTGTTCTGTTGTCTGGTCAGCACTGC
TACTCATTTCTCGCTCTGTTTCAATCTTTTCACGCTTCACAAGTACTTTA
ACTCGAGGAAGATCACATACTGAAAGATTTTCACATGAAGAATTGGATTT
TGTAAGTGTTTTTTTATTTTAATGTTCTTATTTTTGTTTTGCACAAAGAG
TCAAGACATATAAGTATAGACAAATCAAATTTTTCAATCTGGCAGACCAC
AAGGACTGGACTGGAGTTTGGTTATTAATAGACAAAGGCCTTCTTAGGGG
CACTGACCTTGTACCCTGTGACTTGACTTTGGATCCCGTAGGATCCTATG
TTTGCTTCCACTGATGCAAATTTTTTACGTTCTCACACACAGCGGTAGGA
AGGGTTGGGAGAGCTGTTTCTATTAAATTCTGTAAATTTCATAAATGACA
GTATTCCGTTGTGTCTCGGTGGCGTCTCGGTGACGCAAGCAGTTAGGCAT
AGACCTTTTCGCCTTTCAATCCGCCATATTGATTGAATACACCTTATCGG
AAATTCCACCTCCTCGCGTTGTTTATGCTACGCAACACTTTTTGGGAGGT
AAACAAAGCGCGATATTGCGGTTTTCAGGCAAAAAGCCTTACAAAACACC
CAAAATATTGATGCCAAAAGAGCCTCAAAAGGGCTGCCATTGGTCCCATT
TATGTTTACCTCCCAATTTCAACGGATCCATTTTTATAGCGCGATTGTTT
TTGTGGAATTTCCAACAAGGTGTATTGTATGCAAAAACTATGATGGTGGC
CGAACATGCATAATTGACATTATACCGTGAGATTGGGTAAGTTGCATCAG
TGGAGGCTAACATGCATAAAATACAAATTTAAATCAAAACAAAGATGGTA
GAGTGTAGAGCTGCGAGCGGAGCTGCGTAGTTGTATTTTAATGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTAGAAATAA
TCAAATTCGCTCATCTCTTAGAACAAGCACTTCAAAAAACCATAACATTA
GACATAAACTCAAGCTGAAAAATCACCCGCGAAGGTACAATGATAATCCT
TTTTTAGCTGAGGGCGGTAAATTATTCTCCTGGGAATAGAACAGCCAAAC
GATCAAATCAAAACATTGATCTGAACCCGCTGAATGTGTGACGTCATAAT
TACTGTTTTCAGTTTGCGTGTTTTGAAAGTTGATGTGTGTACTTTGTCTT
GGTGGAATTTTACTAAACTAAATCCAACCACGGCTTTTTCCTTCCTCTAT
TTTTGCACACAATTCAAGATGGCGAATGGAAAGGCGAAAAGGTCTATTGG
GGTTGATAAACCAAAGGTTGCTATAATCCCCATGAATTGCATCTCCCAAA
TGATCTCTCTCTTGATACTTTAATCAGATTAAATTTGCCCAAAGATTAAA
TTTCGCTAGCGAGAAAGATCCTGAAATTTTCTGGATTTAATTTTGCGAGT
CACAGTTTTGAAAATTTTTGCGTGGATTTAATTTCGTGAGTAAGCCTGAA
AACAGCTGAAAAATAGCCATTTTTGCCACAAAATGGAGACTTCAGACTGG
TTTTTCCGCTGAAAATGTGATTAAAAAAATTTTGTGGTAGATTTAATTTT
GCGAGTCAGAAATCATATACATTTTCGCAAGTTTTAATTTCGTGAAAGAT
GCAAAAATTTGCGAAATCGTGAAATATAATTTCGCAAAAGTTAATCTGAT
TAAAGTATGCAACGGGCTTAAGAACTGACATCTTGTTATTTAGAATTTTC
AAAAGACTCACTCTAGATCATTAAAAAATTGCGTCATTAGTTATATCTTT
GTGATATCTTTTTAGTTATATCTTTGTGATGCAAGAGGTAAGGGCATTTT
TCATTGATGTCCCTAGCGGTTTAGTCGCGCGGCTGAGGTCGAAAAAAGTG
GCTAGAAAATGATTTTCGTGATACACCTCTTAGATTCCACTTTTTTCGAT
GGAAACTCTCGAATTAGTATGTGTAGATTACAAAATCAAAAAGTTTCCAC
GATATTATCGTGCAAGTAACGAGTAATTGGCGATGTTTTGTGTTTCCAGG
CAAAATTGCAAGGCCTGGAAATTCATGATTTTTGGGAGGTCTTCAAATTA
AAAAAAGGCCTGTATCACATGATAGAGATCTTCAAACTGAGCAAAAAAGT
GTATTACAGCAAAGTCCCAACTTCTCTAGATCAAAAGTTATGGGCCTATT
TGTGGTCAAAAAGGTGTTTAATTTTGCATAAATTAATGCAGATTGTGGGG
AAATTCCCTGTTTTCCATCAGTTTTTTAAAAAGATGAAAAACAAAGAAAA
TTTAAGAATTGACTTTTTTAATATTTCAACACGAGTGATTCATTCACCTT
AGAAGATCATTACAATATCAACAAGACGACTCTAAGTCGAAAATTTCGCA
TATTATGTGAAAAAATAAGCCCAAATTAATGTTCAAAAACAGAAATATTA
ATGCTAAAAAAAGAGCTTTATAAAAGCTTTAAAAATGGATAAAATGATAC
AAATTATACCGCGTTGTTTTCTTATAAAAAACTTCTTATAAGAAAAATAA
TTGTGCTCAAATATTCTGCCCCATCCCTTAATTACTTTGTAATATCTAAT
TGCCGAAGCCCAACGAACTTTAGTTCAATATTTATCAATTGTATTCTTAT
AAAAAAAACTTTATCTTTTAAGAAAAAGAAATGTAATCAAATTCTGCCTC
ATCTTATAATTACTTTGCAATATCTAATTGCCGAAGCCTAATGAGCTTTA
GTAGTTACATACTTCAATAGTTACTAACTGTGTTCTTACAGAAAAACTTC
TTATAAGAAAAATAAATGTATTCAAATTCTGCCCCATCCCTTAATTACTT
TGCAACATCTAATTGTAGCCAAATGGACTTTAGTTCAATAGTTATTAATT
AAATTCTTATAAAAAATTTCTTATAAGAAAAATAAATGTCCTTTAATTTG
TTTACGTAATTGCTGAAAAGAAATATCATTTGGATCAAAATTTGTTATAA
CAATATTCTTGCAAAGAAATCAGCGAAATAATTAGATCTTTAGAAAGTTC
TAGAACATTCTAGAAATCATGTGAGACAGGGAGATGTACTTCTTGAAAAA
AATATTCCGAGGACGCAGGCACGCACACAGAAGGCTATCGTAATAATTCG
CTAAGGCGAAATTAATAATTTTACAAAAATATTTATTCAATCGTAAGATA
TATTCCAGAGTTTGATTCTTGTCTCCTCTGCAGATTATATCGAGAACGAT
TTTTTTAAAGACACAGCTTATTATTTCAAACTTTGAAGTATCAATTTAGA
CGAAATATTACTATTTATTTCTCACTTTTTAAAATAACATCTTTTCACGC
AAAATCCACTATATTTCCTTGTGACGTCATCAACTACTCAATAATTCTAC
CAGACTAATAGTACTAGGAGATCTGTTTGAGTCCCGATAAAAGTTTGGAA
AAATATAGCTACGAAATATTTAATTAGGAAAAAAATACTTCACTCTTAAT
TATCTTTTCAACAATAAGAAAACTACTATCTAATTCAAATTCTATAAAAG
AGTTATAACCATTCTTTTCTCAGCTCCAGATAATTGAAACACAACTTTTC
CCCTGCTTTTTTATTCTGAATAGCAAACTCAGTTTTTTTGAAAATTAAAA
ATTTCTCCCTATTTTCCTTCAGATAATATGGCATGTTTGCTACTTACAAG
GAAGCTTTATGGTCAACCTGTGGTTCGGTCTTTCACGCAAAATATCTCAA
ATGTGTCCGTGAAAACAAGATTGTCATTGCCAACTAGAAAGCCACAACAA
CTTGTGACGAGAACGTTCCAAACAACATCAAAGGTTCATGCAGCACCTCT
TGGACCATTACTTGTCAAGTTATCATCGCCTTTATATCGCTTCGGATTTC
TCTACCTTGGTCGAAGGCTTCGTCAGTATTGGAATAATTTACCACCTGGT
AAACGAGCAAAGTATACTAAAATATTTTCTAATAGTCGGAATGCAATATT
TGGAGGTGTTTTTGCATTCGGTGGTTTATCAGGGTTGTATTATATTTCAC
ATTTAGAAGAAGCGCCGGTGACGCATCGTAAACGGTTTATGATTTTGAAT
CATTCACAACTAGAGAAAGTTGCAGCCTTTGAATGGCAGAAAATGGATGA
GATGCTTGAACGAAAGAAATTGCCACCCCATCATCCTCTATTTAAGAAAG
TTTACAAAATCGTGAAGCGAATACTGATAGCCAATCAATCGAGAGAAGTG
AATGGGATAAAATGGGAGGTCAACNATTCAAGAAGGTTTACAAAATCGTA
AAGCGAATACTGATAGCCAATCAATCGAGAGAAGTGAACGGGATAAAATG
GGAGGTCAATGTTGTTGATTCTGATGAAGTCAACGCATTTGTTTTGGCCA
ATGGTCAAATATTCGTCTTCACTGGTATACTAAATGAAATGGAAAATGAA
AACGAACTAGCAGGTGTGCTCGGTCATGAAATTGCTCATGCTATTATGGG
ACATTCTGCCGAGCTTCTTAGCTTAGCAGGATTTTTTAATGTATTTTCAC
TTGCGATTTTGACGACATTATGGGCGGTCATCCCCACTGATATCGGGGCG
TTTGCCGCTTCACTACTGCAAAATACAATTGAAGACTTGATTATTAACTT
ACCTTACTCACGAAAATTAGAGCAAGAAGCGGACGAAGTTGGTCTCTTAC
TGGCCGCGCGGGCGTGCTATGATGTTCGCTACGTGCCGAGATTCTGGCAT
CGAATGCATCTAAAAGACGGGGGTGGTAGTGACGCCATCATGAAATGGTT
TTCAACTCACCCAACAAACGCCAGTCGTGTTAAACAAATTGATGAACTGA
TGCCGGAAGCTCTGGAGTTGAGGTCTTCTTTCCAATGTCCACAATTACAA
GAATTCTATGATGCTTCTCATAGGTTTAGACATGTTCGATTGATTTGACC
ATTTTTAGCAGTGAATATTCTGAACTTTCTGAATTGATTGATTGATGATT
TAGTATTTTACAAAACTTTGTAACACTCGGTGGATGTAATATTTTTGATA
TATTCTCTCAGTCGAAAATGCCTTCATTTACTTCACGTAGGCTTTTCATC
AATTCGCCGATGATTTTACATGTTTTTGTGAGGCTTCTGTAAACAAACTT
TCAGTAGTAGCGTGGTGACTTAGGCAAGTACCTCACCAAAAAGAAGGATT
TTTTCATTCTGTAACTTACTTCTCAGAGAAAAGGCCGTGAAATTGCCTGC
TTCGTTAACACTTCCCCTTTTCCCTGCTAACACGCTACTGCTAACTCTCT
AAAATAGTATTATAGTTTAAAGTAAAGGATAGCATATTTAGAATATTTTG
TTCAGTTTCAATTCAATTTTGTACCATTTTGTAAATTTTATGATTTTTGT
ATAGGCCTAGGTGTTTTTACACAACGTGATGTAGTGGGAATCTAAAAAGA
GATAAATGTTTTTTTTCTAACTCATTCCCGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022919-exon-sc0000436-1575043694:181252..181452 | TCONS_00022919-exon-sc0000436-1575043694:181252..181452 | Clytia hemisphaerica | exon |
| TCONS_00022919-exon-sc0000436-1575043694:176854..177380 | TCONS_00022919-exon-sc0000436-1575043694:176854..177380 | Clytia hemisphaerica | exon |
| TCONS_00022919-exon-sc0000436-1575043694:175570..176767 | TCONS_00022919-exon-sc0000436-1575043694:175570..176767 | Clytia hemisphaerica | exon |
| TCONS_00022919-exon-sc0000436-1510915933:181252..181452 | TCONS_00022919-exon-sc0000436-1510915933:181252..181452 | Clytia hemisphaerica | exon |
| TCONS_00022919-exon-sc0000436-1510915933:176854..177380 | TCONS_00022919-exon-sc0000436-1510915933:176854..177380 | Clytia hemisphaerica | exon |
| TCONS_00022919-exon-sc0000436-1510915933:175570..176767 | TCONS_00022919-exon-sc0000436-1510915933:175570..176767 | Clytia hemisphaerica | exon |
| TCONS_00022919-exon-sc0000436-1491911889:181252..181452 | TCONS_00022919-exon-sc0000436-1491911889:181252..181452 | Clytia hemisphaerica | exon |
| TCONS_00022919-exon-sc0000436-1491911889:176854..177380 | TCONS_00022919-exon-sc0000436-1491911889:176854..177380 | Clytia hemisphaerica | exon |
| TCONS_00022919-exon-sc0000436-1491911889:175570..176767 | TCONS_00022919-exon-sc0000436-1491911889:175570..176767 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000436 | supercontig | sc0000436:175570..181452 - |
Blast
BLAST of TCONS_00022919 vs. Swiss-Prot (Human)
Match: OMA1 (Metalloendopeptidase OMA1, mitochondrial OS=Homo sapiens GN=OMA1 PE=1 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 2.658e-68 Identity = 121/336 (36.01%), Postives = 202/336 (60.12%), Query Frame = 3
Query: 339 RTFQTTSKVHAAPLGPLLVKLSSPXXXXXXXXXXXXXXQYWNNLPPGKRAKYTKIFSNSRNAIFGGVFAFGGLSGLYYISHLEEAPVTHRKRFMILNHSQLEKVAAFEWQKMDEMLERXXXXXXXXXXXXVYKIVKRILIANQSRE-VNGIKWEVNVVDSDEVNAFVLANGQIFVFTGILNEMENENELAGVLGHEIAHAIMGHSAELLSLAGFFNVFSLAILTTLWAVIPTDIGAFAASLLQNTIEDLIINLPYSRKLEQEADEVGLLLAARACYDVRYVPRFWHRMHLKDG-GGSDAIMKWFSTHPTNASRVKQIDELMPEALELRSSFQCPQL 1340
R F T+ + AAP+ PLL+ + P+ + + +GR +R++W LPP K+ + ++ +F G+ +FG L ++Y +HLE +P+T R + ++L Q ++ E++ E + L + V +++ ++ N+ ++ I W ++VVDS +NAFVL NGQ+FVFTG LN + + ++L+ +LGHEIAHA++GH+AE + + + LT +WA+ P D A +Q+ +++ + N PYSRKLE EAD++GLLLAA+AC D+R FW +M D G + +W STHP++ +RV+ +D L+P+AL++R CP L
Sbjct: 134 RNFHTSPRFQAAPV-PLLLMILKPVQKLFAIIVGRGIRKWWQALPPNKKEVVKENIRKNKWKLFLGLSSFGLLFVVFYFTHLEVSPITGRSKLLLLGKEQFRLLSELEYEAWMEEFKNDMLTEKDARYLAVKEVLCHLIECNKDVPGISQINWVIHVVDSPIINAFVLPNGQMFVFTGFLNSVTDIHQLSFLLGHEIAHAVLGHAAEKAGMVHLLDFLGMIFLTMIWAICPRDSLALLCQWIQSKLQEYMFNRPYSRKLEAEADKIGLLLAAKACADIRASSVFWQQMEFVDSLHGQPKMPEWLSTHPSHGNRVEYLDRLIPQALKIREMCNCPPL 468
The following BLAST results are available for this feature:
|
