TCONS_00022902 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022902
Unique NameTCONS_00022902
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022902 ID=TCONS_00022902|Name=TCONS_00022902|organism=Clytia hemisphaerica|type=transcript|length=368bp
GCCCCATTGTCAAAATGTCGTCGTCCAAAGTAGCTGTAGTTTTGGTCGCT
GGAGGGGCTTTAACtgttggatttcattttttgatgCAGTCCATTTCACC
TTCGAAAGATGATATGATCAGAAGACTCCCGCCTGACAAGGTTACACCAG
AAGCTCTATCAAAGATTGAGAAGCGCAATCAACTGATATTTGATTCTTTG
AAAGAAACTATGAACTCTGATGAGCCTGTTTGGAAATTACAAGCCAAAGT
TCAAGAGATGCAGAAGAAAATGCCCCGAGAACattctAAAACTATTTTTT
ACTGCTGTCATTGTAACGAATATCAAAGGCTTAAAGGCATTCAAGTCTTT
CTCAAAAGTGAAAGACCA
Run BLAST on NCBI

protein sequence of TCONS_00022902-protein

>TCONS_00022902-protein ID=TCONS_00022902-protein|Name=TCONS_00022902-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
PIVKMSSSKVAVVLVAGGALTVGFHFLMQSISPSKDDMIRRLPPDKVTPE
ALSKIEKRNQLIFDSLKETMNSDEPVWKLQAKVQEMQKKMPREHSKTIFY
CCHCNEYQRLKGIQVFLKSERP
Run BLAST on NCBI

transcript from alignment at sc0000436:5198..8899-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022902 ID=TCONS_00022902|Name=TCONS_00022902|organism=Clytia hemisphaerica|type=transcript|length=3702bp|location=Sequence derived from alignment at sc0000436:5198..8899- (Clytia hemisphaerica)
GCCCCATTGTCAAAATGTCGTCGTCCAAAGTAGCTGTAGTTTTGGTCGCT
GGAGGGGCTTTAACTGTTGGATTTCATTTTTTGATGCAGTCCATTTCACC
TTCGAAAGATGATATGATCAGAGTAAGTATATTTTTTTACATCTTAGCCC
TAAGAAGTCCGAGAATCATTTTGCAGTCTTTGCATTTTGACGAGTTTCTA
TCTATTATATGTATGTTGAGTTGCATAACTTTCCAATAATAATTTTTATA
GCTATATATATAACTGTTTTAAACCACTTTAACCCTACTATATGTATTTT
CTTTTACAGAGACTCCCGCCTGACAAGGTTACACCAGAAGCTCTATCAAA
GATTGAGAAGCGCAATCAACTGATATTTGATTCTTTGAAAGAAACTATGA
ACTCTGATGAGCCTGTTTGGAAATTACAAGCCAAAGTTCAAGAGATGCAG
AAGAAAATGCCCCGAGAACGTTAGGAATTGATTAAGCTAAATTGAAATGG
TGTTGTAGAGTGCAAAAAATGGTTTGTAGGGTGAAAAAATGGTTTGAATC
TTACCATTGCAATACTCCTTTTTTTATAAGAACAATGAGACTCAAAATCG
CCGAAAATATGAAGAATTTAAGTACAATGCTTGTTGATGAGCCTGAAATT
ACTCAATTTCAAGCAATTTAGGGGTTAAAGTAGTAAAAACTGTGTATAAC
GCCTAAAATACCTTAGTTACACCCTGTAAATAAAAGAATATGATTAGAAC
TATTTGAGACTCAAAGTGCCAAAAAAAATAAGAACAGGCTCAGCATTTTA
CTGGTTCTTATAAAAACAAGTGATACTTTGATGGACCTACCTGGATTATG
CATTTAACACGTTTATAAGTTAGGTCACGTTTTTTTAGCTGAAATATACC
CCAAAATTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNAAAAAGTGTACTAGCCGAAAAGGCAATTCAC
AACTTATATTTTTCAGATTCTAAAACTATTTTTTACTGCTGTCATTGTAA
CGAATATCAAAGGCTTAAAGGCATTCAAGTCTTTCTCAAAAGTGAAAGAC
CA

Coding sequence (CDS) from alignment at sc0000436:5198..8899-

>TCONS_00022902 ID=TCONS_00022902|Name=TCONS_00022902|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at sc0000436:5198..8899- (Clytia hemisphaerica)
ATTCTAAAACTATTTTTTACTGCTGTCATTGTAACGAATATCAAAGGCTT
AAAGGCATTCAAGTCTTTCTCAAAAGTGAAAGACCAAGACTCCCGCCTGA
CAAGGTTACACCAGAAGCTCTATCAAAGATTGAGAAGCGCAATCAACTGA
TATTTGATTCTTTGAAAGAAACTATGAACTCTGATGAGCCTGTTTGGAAA
TTACAAGCCAAAGTTCAAGAGATGCAGAAGAAAATGCCCCGAGAACCCCA
TTGTCAAAATGTCGTCGTCCAAAGTAGCTGTAGTTTTGGTCGCTGGAGGG
GCTTTAACTGTTGGATTTCATTTTTTGATGCAGTCCATTTCACCTTCGAA
AGATGATATGATCAGAATTCTAAAACTATTTTTTACTGCTGTCATTGTAA
CGAATATCAAAGGCTTAAAGGCATTCAAGTCTTTCTCAAAAGTGAAAGAC
CAAGACTCCCGCCTGACAAGGTTACACCAGAAGCTCTATCAAAGATTGAG
AAGCGCAATCAACTGATATTTGATTCTTTGAAAGAAACTATGAACTCTGA
TGAGCCTGTTTGGAAATTACAAGCCAAAGTTCAAGAGATGCAGAAGAAAA
TGCCCCGAGAACCCCATTGTCAAAATGTCGTCGTCCAAAGTAGCTGTAGT
TTTGGTCGCTGGAGGGGCTTTAACTGTTGGATTTCATTTTTTGATGCAGT
CCATTTCACCTTCGAAAGATGATATGATCAGAATTCTAAAACTATTTTTT
ACTGCTGTCATTGTAACGAATATCAAAGGCTTAAAGGCATTCAAGTCTTT
CTCAAAAGTGAAAGACCAAGACTCCCGCCTGACAAGGTTACACCAGAAGC
TCTATCAAAGATTGAGAAGCGCAATCAACTGATATTTGATTCTTTGAAAG
AAACTATGAACTCTGATGAGCCTGTTTGGAAATTACAAGCCAAAGTTCAA
GAGATGCAGAAGAAAATGCCCCGAGAACCCCATTGTCAAAATGTCGTCGT
CCAAAGTAGCTGTAGTTTTGGTCGCTGGAGGGGCTTTAACTGTTGGATTT
CATTTTTTGATGCAGTCCATTTCACCTTCGAAAGATGATATGATCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012878XLOC_012878Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022902-proteinTCONS_00022902-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022902-exon-sc0000436-1575043694:8778..8899TCONS_00022902-exon-sc0000436-1575043694:8778..8899Clytia hemisphaericaexon
TCONS_00022902-exon-sc0000436-1575043694:8431..8590TCONS_00022902-exon-sc0000436-1575043694:8431..8590Clytia hemisphaericaexon
TCONS_00022902-exon-sc0000436-1575043694:5198..5283TCONS_00022902-exon-sc0000436-1575043694:5198..5283Clytia hemisphaericaexon
TCONS_00022902-exon-sc0000436-1510915933:8778..8899TCONS_00022902-exon-sc0000436-1510915933:8778..8899Clytia hemisphaericaexon
TCONS_00022902-exon-sc0000436-1510915933:8431..8590TCONS_00022902-exon-sc0000436-1510915933:8431..8590Clytia hemisphaericaexon
TCONS_00022902-exon-sc0000436-1510915933:5198..5283TCONS_00022902-exon-sc0000436-1510915933:5198..5283Clytia hemisphaericaexon
TCONS_00022902-exon-sc0000436-1491911889:8778..8899TCONS_00022902-exon-sc0000436-1491911889:8778..8899Clytia hemisphaericaexon
TCONS_00022902-exon-sc0000436-1491911889:8431..8590TCONS_00022902-exon-sc0000436-1491911889:8431..8590Clytia hemisphaericaexon
TCONS_00022902-exon-sc0000436-1491911889:5198..5283TCONS_00022902-exon-sc0000436-1491911889:5198..5283Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000436supercontigsc0000436:5198..8899 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
72.9034	86.8979	24.7279	19.4556	22.5375	19.82	17.1508	23.3044	36.7676	24.7062	37.5724	31.9516	21.7591	19.6649	19.4763	33.961	61.4312	66.9087	22.9192	22.3099	58.5977	58.3251	45.9052	47.1303	18.4546	14.9026	21.9293	14.9205	21.0354	21.4799
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012420Cbp4
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022902 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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