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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022899 ID=TCONS_00022899|Name=TCONS_00022899|organism=Clytia hemisphaerica|type=transcript|length=2958bp
TAAGGAGGTCATCAGAAGGATAAACCTCAAGAGACGAAGCATTTAACAGA
GAAGCTTTTAAAAGAGGTACGTCTAGCAGTTAGATCTCTGACACATAGAA
GtactgaaatttcaaaagatggATATAAATGAACTACTAAACAATACAAT
TGACAATTATTGGAGTTGGCGTTTATTAGATATTCCGGAATTCGCCACAT
TTGTCGGAGAGAACAAACACGATGACCAATTAATGGACATGAGTTTAAAC
GGATATCTCCGACGTAGAGATGATGCCAAAACATGGTTAGCAGAAGCTCA
CAAAATCCGCAAATTGGCCGAGAAAACCCCTCCATCAAATGAATGTCAAA
TTCATTTAGATTATCTTCAGCATGATACTGAAacatttcttgaaggattg
ACACATCAGACTTATCTCTGTCCTTTGAACCCTACTGACGGACCTCATAT
AAAATTTCCAAGGCTCCTTTCGTGGATGCCCAAAGACACAACAGAGGGTC
AAGAAAACATCAAACGACGCCTTCACCAGTTTTGCATCCAAATCGATCAA
ATGATCGAGCTGATGAAAGAAGGAATACGTTTAGAGAAGACAGTTGCTAT
CAACGTTGTTGAATGTTACCCAGCAATGTTGTTAGAATTCTGTAAAAGGC
CAAAGGAGGAATCAACTTTATTTCAGCCATTCCAGGATAAACCAACGAAG
CTGTCTGATGAAAACTGGAGCAATTTTGTTGATAATGTCAATCATTTGTT
GACCACACTTGTTCTTCCCGCGTATGAAAGACTGGCTATTTTCATTCGTG
ATGTCTATATACCAAAAACAAAACCAGGTCCTGGTTTACCACCTGAAGTT
TATGAATCATACGTTCGTTTCCATACCGATGGTGCTACTACTGCTAAAGA
AATATTTGATTTGGGAATGGAGAAACTGGAAATGTTGAAGCCGAAGCTTG
AAGAGCAACAGAAGAAAGTCGGGTTCGAAGGAACACAACGTGAATTCATC
GAATACCTGAGAACAGATCCAAAATTCTCCTTTTCATCACGCGAAGAGAT
GATGAAAGTCTACGAAAAGGAGAGTGAACGCGTTTACAGCCTTCTACCGA
AAGTCTTTTCTAAGCTTCCAAAATTGTCCTACAAAGTCGTTCCAGCACCG
GTGGAGATTGAAAAACATTATTGTGTTGGAGCTTATGTCGCTGGAGATGT
GGAAAAAGACCGGCCAGGGCTCTTCATTTTGAACACATATTCACCAAAAA
GCAGAAAGAAGTACGATGTATCAGGAATCATTCTTCANAGGGCTCTTCAT
TTTGAACACATTTTCACCAAAAAGCAGAAAGAAGTACGATGTATCAGGAA
TCATTCTTCACGAAGCTTTACCAGGTCACCACATCCAACTTGCTCTTGCT
GCAGAATCTGACCTTCGCGATTACCGACGTTTCGCTGATGAACTGAGATA
CTGGGATCTACCGGCACACGTTGGTATGAGGTCAGCTTATCATGAAGGTT
GGGCTACTTATGCAGAACATATCGGTCACGATCTAGGACTTTATGACGAT
CTTTATGATCATATTGGGAGTATATCACGAGAAATGGAATTAGCTTGTCG
TTATGTGGTGGATGTTGGTCTTCATTTGTATGGATGGTCGAGAGAGAAGG
CTTACCAATTCATGCTGGATAATTGTTGTTGTGATGAGTTGGAGCTTCGA
AATGAAGTCTTCAGATATATGTTTCTTCCTGGCCAAGCATTATGTTATCT
GTTTGGGAAAGATAAATTCCTTGAGTATCGTAAGAAAGCAGAAGAGAGTC
TGGGTGAGAGATTCAATGTGGGTGAATTTCATACAATGTTGTGTTCGTTA
GGTGATGTACCCATGTTCATTGTGGAAGGACAAGTTGACAATTTTATCGC
TGATCGAATTGAGAAAGCGGCATAAATAAAACAGTCTATATTTAATTACC
GAGTTTGTAATTAGTAAAAAAGTAGTATAACAATTCTTTGACCAAACttt
gttttaaaacaaattgAAGAAAGGTATGATAAGTAATTTACCagaaagca
aataaaatttatgatatcactctttcaatttcaattttaaattgatTAAA
TTCACAAATGTAATCTTATAATTTTATAAAAGCAAATATGTAAACCATAT
AGTGAAGAATTCTAACCGAAAAGTCATTTTCACTAATCATTACTTTATAT
TAGTTCCAAGACAATGAACAAATCTTTTAAAACATAAAGACAAGTTTATT
TCAGTCTTCCTTTTAGAAGAGTTTACGGGAAATTCATGTGTTCACTCGAT
CGATTTCGAAGTCAGATAAAACCAATTTCACATAGTTTGAGATGAAATTT
TCTGTTATAAGCCTCATTTTTGGCAGATGAGGGATGTTTGATCACCGATG
TTTCTTGAGGCATTCAATCGTCTCAAAACAATTTcgtaagaaactaatca
attgATTTCTCTGCTCCAAATTGGCTTCTTGAATCGATAAATTATGATTA
GCCCATGCAATTTGAGCATAAATACATTCAATAGAACGTTCAACAGTCTG
TTTCTCACTTTCGCTATTACTGAATGCAGTTGAGTTGGTTGGCTCGTTTC
TAGATGTTGGTGTCGACCGACTATCTAACTCTATTCGTCCccctgaaaaa
tggaaaaaataaaataattaggGATTTGCTTTGATCATTTAACTTTATGT
GATTCgtaactgtcgaacgtgctaaccgcactgggctcaacttcagtgtt
tttaaatcattcgtaggcccaattgtaaaattgtaaccaatttcaactaa
aaactgataaccacgcccttaaaatggaaattttaaaataatgaaaaacc
aCCACAGGGATTCGCCTAAGGATcgagtgtgccaaatttcagccaaatct
aaccacttttgaagtctccagccccaaagttttagcctcgtattggtgaa
aactcgtg Run BLAST on NCBI protein sequence of TCONS_00022899-protein >TCONS_00022899-protein ID=TCONS_00022899-protein|Name=TCONS_00022899-protein|organism=Clytia hemisphaerica|type=polypeptide|length=430bp
MDINELLNNTIDNYWSWRLLDIPEFATFVGENKHDDQLMDMSLNGYLRRR
DDAKTWLAEAHKIRKLAEKTPPSNECQIHLDYLQHDTETFLEGLTHQTYL
CPLNPTDGPHIKFPRLLSWMPKDTTEGQENIKRRLHQFCIQIDQMIELMK
EGIRLEKTVAINVVECYPAMLLEFCKRPKEESTLFQPFQDKPTKLSDENW
SNFVDNVNHLLTTLVLPAYERLAIFIRDVYIPKTKPGPGLPPEVYESYVR
FHTDGATTAKEIFDLGMEKLEMLKPKLEEQQKKVGFEGTQREFIEYLRTD
PKFSFSSREEMMKVYEKESERVYSLLPKVFSKLPKLSYKVVPAPVEIEKH
YCVGAYVAGDVEKDRPGLFILNTYSPKSRKKYDVSGIILXRALHFEHIFT
KKQKEVRCIRNHSSRSFTRSPHPTCSCCRI Run BLAST on NCBI transcript from alignment at sc0000436:221538..224547+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022899 ID=TCONS_00022899|Name=TCONS_00022899|organism=Clytia hemisphaerica|type=transcript|length=3010bp|location=Sequence derived from alignment at sc0000436:221538..224547+ (Clytia hemisphaerica)
TAAGGAGGTCATCAGAAGGATAAACCTCAAGAGACGAAGCATTTAACAGA
GAAGCTTTTAAAAGAGGTACGTCTAGCAGTTAGATCTCTGACACATAGAA
GtactgaaatttcaaaagatggATATAAATGAACTACTAAACAATACAAT
TGACAATTATTGGAGTTGGCGTTTATTAGATATTCCGGAATTCGCCACAT
TTGTCGGAGAGAACAAACACGATGACCAATTAATGGACATGAGTTTAAAC
GGATATCTCCGACGTAGAGATGATGCCAAAACATGGTTAGCAGAAGCTCA
CAAAATCCGCAAATTGGCCGAGAAAACCCCTCCATCAAATGAATGTCAAA
TTCATTTAGATTATCTTCAGCATGATACTGAAacatttcttgaaggattg
ACACATCAGACTTATCTCTGTCCTTTGAACCCTACTGACGGACCTCATAT
AAAATTTCCAAGGCTCCTTTCGTGGATGCCCAAAGACACAACAGAGGGTC
AAGAAAACATCAAACGACGCCTTCACCAGTTTTGCATCCAAATCGATCAA
ATGATCGAGCTGATGAAAGAAGGAATACGTTTAGAGAAGACAGTTGCTAT
CAACGTTGTTGAATGTTACCCAGCAATGTTGTTAGAATTCTGTAAAAGGC
CAAAGGAGGAATCAACTTTATTTCAGCCATTCCAGGATAAACCAACGAAG
CTGTCTGATGAAAACTGGAGCAATTTTGTTGATAATGTCAATCATTTGTT
GACCACACTTGTTCTTCCCGCGTATGAAAGACTGGCTATTTTCATTCGTG
ATGTCTATATACCAAAAACAAAACCAGGTCCTGGTTTACCACCTGAAGTT
TATGAATCATACGTTCGTTTCCATACCGATGGTGCTACTACTGCTAAAGA
AATATTTGATTTGGGAATGGAGAAACTGGAAATGTTGAAGCCGAAGCTTG
AAGAGCAACAGAAGAAAGTCGGGTTCGAAGGAACACAACGTGAATTCATC
GAATACCTGAGAACAGATCCAAAATTCTCCTTTTCATCACGCGAAGAGAT
GATGAAAGTCTACGAAAAGGAGAGTGAACGCGTTTACAGCCTTCTACCGA
AAGTCTTTTCTAAGCTTCCAAAATTGTCCTACAAAGTCGTTCCAGCACCG
GTGGAGATTGAAAAACATTATTGTGTTGGAGCTTATGTCGCTGGAGATGT
GGAAAAAGACCGGCCAGGGCTCTTCATTTTGAACACATATTCACCAAAAA
GCAGAAAGAAGTACGATGTATCAGGAATCATTCTTCANAGGGCTCTTCAT
TTTGAACACATTTTCACCAAAAAGCAGAAAGAAGTACGATGTATCAGGAA
TCATTCTTCACGAAGCTTTACCAGGTCACCACATCCAACTTGCTCTTGCT
GCAGAATCTGACCTTCGCGATTACCGACGTTTCGCTGATGAACTGAGATA
CTGGGATCTACCGGCACACGTTGGTATGAGGTCAGCTTATCATGAAGGTT
GGGCTACTTATGCAGAACATATCGGTCACGATCTAGGACTTTATGACGAT
CTTTATGATCATATTGGGAGTATATCACGAGAAATGGAATTAGCTTGTCG
TTATGTGGTGGATGTTGGTCTTCATTTGTATGGATGGTCGAGAGAGAAGG
CTTACCAATTCATGCTGGATAATTGTTGTTGTGATGAGTTGGAGCTTCGA
AATGAAGTCTTCAGATATATGTTTCTTCCTGGCCAAGCATTATGTTATCT
GTTTGGGAAAGATAAATTCCTTGAGTATCGTAAGAAAGCAGAAGAGAGTC
TGGGTGAGAGATTCAATGTGGGTGAATTTCATACAATGTTGTGTTCGTTA
GGTGATGTACCCATGTTCATTGTGGAAGGACAAGTTGACAATTTTATCGC
TGATCGAATTGAGAAAGCGGCATAAATAAAACAGTCTATATTTAATTACC
GAGTTTGTAATTAGTAAAAAAGTAGTATAACAATTCTTTGACCAAACttt
gttttaaaacaaattgAAGAAAGGTATGATAAGTAATTTACCagaaagca
aataaaatttatgatatcactctttcaatttcaattttaaattgatTAAA
TTCACAAATGTAATCTTATAATTTTATAAAAGCAAATATGTAAACCATAT
AGTGAAGAATTCTAACCGAAAAGTCATTTTCACTAATCATTACTTTATAT
TAGTTCCAAGACAATGAACAAATCTTTTAAAACATAAAGACAAGTTTATT
TCAGTCTTCCTTTTAGAAGAGTTTACGGGAAATTCATGTGTTCACTCGAT
CGATTTCGAAGTCAGATAAAACCAATTTCACATAGTTTGAGATGAAATTT
TCTGTTATAAGCCTCATTTTTGGCAGATGAGGGATGTTTGATCACCGATG
TTTCTTGAGGCATTCAATCGTCTCAAAACAATTTCGTAANTGATCACCGA
TGTTTCTTGAGACATTCAATCGTCTCAAAACAATTTcgtaagaaactaat
caattgATTTCTCTGCTCCAAATTGGCTTCTTGAATCGATAAATTATGAT
TAGCCCATGCAATTTGAGCATAAATACATTCAATAGAACGTTCAACAGTC
TGTTTCTCACTTTCGCTATTACTGAATGCAGTTGAGTTGGTTGGCTCGTT
TCTAGATGTTGGTGTCGACCGACTATCTAACTCTATTCGTCCccctgaaa
aatggaaaaaataaaataattaggGATTTGCTTTGATCATTTAACTTTAT
GTGATTCgtaactgtcgaacgtgctaaccgcactgggctcaacttcagtg
tttttaaatcattcgtaggcccaattgtaaaattgtaaccaatttcaact
aaaaactgataaccacgcccttaaaatggaaattttaaaataatgaaaaa
ccaCCACAGGGATTCGCCTAAGGATcgagtgtgccaaatttcagccaaat
ctaaccacttttgaagtctccagccccaaagttttagcctcgtattggtg
aaaactcgtg Coding sequence (CDS) from alignment at sc0000436:221538..224547+ >TCONS_00022899 ID=TCONS_00022899|Name=TCONS_00022899|organism=Clytia hemisphaerica|type=CDS|length=1293bp|location=Sequence derived from alignment at sc0000436:221538..224547+ (Clytia hemisphaerica)
atggATATAAATGAACTACTAAACAATACAATTGACAATTATTGGAGTTG
GCGTTTATTAGATATTCCGGAATTCGCCACATTTGTCGGAGAGAACAAAC
ACGATGACCAATTAATGGACATGAGTTTAAACGGATATCTCCGACGTAGA
GATGATGCCAAAACATGGTTAGCAGAAGCTCACAAAATCCGCAAATTGGC
CGAGAAAACCCCTCCATCAAATGAATGTCAAATTCATTTAGATTATCTTC
AGCATGATACTGAAacatttcttgaaggattgACACATCAGACTTATCTC
TGTCCTTTGAACCCTACTGACGGACCTCATATAAAATTTCCAAGGCTCCT
TTCGTGGATGCCCAAAGACACAACAGAGGGTCAAGAAAACATCAAACGAC
GCCTTCACCAGTTTTGCATCCAAATCGATCAAATGATCGAGCTGATGAAA
GAAGGAATACGTTTAGAGAAGACAGTTGCTATCAACGTTGTTGAATGTTA
CCCAGCAATGTTGTTAGAATTCTGTAAAAGGCCAAAGGAGGAATCAACTT
TATTTCAGCCATTCCAGGATAAACCAACGAAGCTGTCTGATGAAAACTGG
AGCAATTTTGTTGATAATGTCAATCATTTGTTGACCACACTTGTTCTTCC
CGCGTATGAAAGACTGGCTATTTTCATTCGTGATGTCTATATACCAAAAA
CAAAACCAGGTCCTGGTTTACCACCTGAAGTTTATGAATCATACGTTCGT
TTCCATACCGATGGTGCTACTACTGCTAAAGAAATATTTGATTTGGGAAT
GGAGAAACTGGAAATGTTGAAGCCGAAGCTTGAAGAGCAACAGAAGAAAG
TCGGGTTCGAAGGAACACAACGTGAATTCATCGAATACCTGAGAACAGAT
CCAAAATTCTCCTTTTCATCACGCGAAGAGATGATGAAAGTCTACGAAAA
GGAGAGTGAACGCGTTTACAGCCTTCTACCGAAAGTCTTTTCTAAGCTTC
CAAAATTGTCCTACAAAGTCGTTCCAGCACCGGTGGAGATTGAAAAACAT
TATTGTGTTGGAGCTTATGTCGCTGGAGATGTGGAAAAAGACCGGCCAGG
GCTCTTCATTTTGAACACATATTCACCAAAAAGCAGAAAGAAGTACGATG
TATCAGGAATCATTCTTCANAGGGCTCTTCATTTTGAACACATTTTCACC
AAAAAGCAGAAAGAAGTACGATGTATCAGGAATCATTCTTCACGAAGCTT
TACCAGGTCACCACATCCAACTTGCTCTTGCTGCAGAATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022899-exon-sc0000436-1491911889:221538..223948 | TCONS_00022899-exon-sc0000436-1491911889:221538..223948 | Clytia hemisphaerica | exon |
| TCONS_00022899-exon-sc0000436-1510915933:221538..223948 | TCONS_00022899-exon-sc0000436-1510915933:221538..223948 | Clytia hemisphaerica | exon |
| TCONS_00022899-exon-sc0000436-1575043694:221538..223948 | TCONS_00022899-exon-sc0000436-1575043694:221538..223948 | Clytia hemisphaerica | exon |
| TCONS_00022899-exon-sc0000436-1491911889:224001..224547 | TCONS_00022899-exon-sc0000436-1491911889:224001..224547 | Clytia hemisphaerica | exon |
| TCONS_00022899-exon-sc0000436-1510915933:224001..224547 | TCONS_00022899-exon-sc0000436-1510915933:224001..224547 | Clytia hemisphaerica | exon |
| TCONS_00022899-exon-sc0000436-1575043694:224001..224547 | TCONS_00022899-exon-sc0000436-1575043694:224001..224547 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000436 | supercontig | sc0000436:221538..224547 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010281 | DUF885 |
Blast
The following BLAST results are available for this feature:
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