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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022896 ID=TCONS_00022896|Name=TCONS_00022896|organism=Clytia hemisphaerica|type=transcript|length=2366bpRun BLAST on NCBI transcript from alignment at sc0000436:60308..68834+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022896 ID=TCONS_00022896|Name=TCONS_00022896|organism=Clytia hemisphaerica|type=transcript|length=8527bp|location=Sequence derived from alignment at sc0000436:60308..68834+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00022896 vs. Swiss-Prot (Human)
Match: BAT1 (b(0,+)-type amino acid transporter 1 OS=Homo sapiens GN=SLC7A9 PE=1 SV=1) HSP 1 Score: 333.569 bits (854), Expect = 1.976e-104 Identity = 192/418 (45.93%), Postives = 272/418 (65.07%), Query Frame = 3
Query: 699 FLSPKNVLLETGSVGLSLCVWLLCGLIALFGALCYVELGTEIPLSGAEYSYLYDAFKQSILGRILAFLYSWTATLIIRPSAVAIIATIFAEYVSKPFYDDGVVPIWVIKTTAFXXXXXXXXXXXXXXRWAVIMQNVFTAAKLXXXXXXXXXXXXXXXKGNFKNFEKPFEGSEKNVFTISKGFYSGLWAYDGWNTLNFVTEEMHNPSRDMPRTLIISMSIVIICYLLCNVSYILVLGGDQIAKSSTVALDVANAYLGKASVIIPILVGLSCFGAVNGLAFSSGRLVYAAAREGHLPKVLSMVQMKRRTPIPSLIFTAVISIIMLIPNTSQFETLVGLFSFASWLFYGACFVVLLYLRFSRKTMIRPYKVFLPIPVIMVAVSVFLIVFPFLG----EWIGCTIALGVILLGIPVYIIFVH 1940
F+SPK+VL T +VG L +W CG++A GALC+ ELGT I SG EY YL +A+ G I A+L+SW + ++I+P++ AII F+EYV PFY P V+K A I+ I+ VN +SVR +QN+FTAAKLV VAIII+ G + + +GN KNF+ FEG++ +V IS FY+GLWAYDGWN LN++TEE+ NP R++P +II + +V CY+L NVSY V+ ++ +S VA+ + L AS I+P+ V S GA NG F++GRL+Y A REGH+ KVLS + ++R TP P++IF +I+ I +IP +LV FSFA+WLFYG + L+ +RF+RK + RP KV + IPV+M +SVFL++ P + E++ C + IL G+ Y +FVH
Sbjct: 49 FVSPKSVLSNTEAVGPCLIIWAACGVLATLGALCFAELGTMITKSGGEYPYLMEAY-----GPIPAYLFSWASLIVIKPTSFAIICLSFSEYVCAPFYVGCKPPQIVVKCLAAAAILFISTVNSLSVRLGSYVQNIFTAAKLVIVAIIIISGLVLLAQGNTKNFDNSFEGAQLSVGAISLAFYNGLWAYDGWNQLNYITEELRNPYRNLPLAIIIGIPLVTACYILMNVSYFTVMTATELLQSQAVAVTFGDRVLYPASWIVPLFVAFSTIGAANGTCFTAGRLIYVAGREGHMLKVLSYISVRRLTPAPAIIFYGIIATIYIIPG--DINSLVNYFSFAAWLFYGLTILGLIVMRFTRKELERPIKVPVVIPVLMTLISVFLVLAPIISKPTWEYLYCVL---FILSGLLFYFLFVH 456 The following BLAST results are available for this feature:
BLAST of TCONS_00022896 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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