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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022894 ID=TCONS_00022894|Name=TCONS_00022894|organism=Clytia hemisphaerica|type=transcript|length=1138bp
GCACATTATGTTTTTGATGGGATTACTTCGAAATCAGGCTGACGATCAAA
GACGAGATGAAGGTGAATCAGGAGGCTGCACAAATTCCTGGACTCGAAAC
CGAGGAGCGAtctttgagaaaattttaatgatTGGGGCAGGAGTTGGGca
atatttctttcaaaataatgtttttatctGCCCAGTGAAGGATTATACTG
AATACGcccttctcattttgatcaCGCCCATGTTGACTTTATTCTGTGTT
TCGATCATCATGGGAACAAACTCATCGAAAATTGGAAATGTCTTGAAAAG
CTGTTATAAAACTAGACGATTGCGTATTGGGCGTGTGTGCCACACAGAGC
TagttttcaactttttgtactATATCTCAATCAGTTTAATCACACCGATG
GTTTGGTTGATCATGTGTTTTCTTCGGAAGGACATCTATCTGTGTGCTGT
GGTGGGTCCTTTGATGTACAATGGTACTAAAGCAGCTCAGATACACTTGA
ATGATCACCGTGCGGCTTCAATGAAATGGGGTCTGGGTTTGCTACAAGGA
TCCGTTGGTGCAGTCATCGTCATCTATATTGTCAAAGAAGTATTGAAgca
taaaagaaaaaataatgCCAATGAATTGAAGATTTATCAGAGATACCAAA
AACGATGCGCTCAACAATTCTTCCATCAGTCAGCTAAACAATACATCCGT
CACTCACTCAAAAACAACATTGAGAATTTATTCTCCACTAAAGATGTCCA
GCAAAATAACAATACTTCTTCACCGTTGGATGTTTTGGAGAATCTGGAAT
CCATCTGGGAATCAATGAGAGCTGAATATCCTGGTGTTtgtttggaatgt
tttgatgAAGGAAAAGGGGAGGACTTCTTTGATGGGAATGCCATTGAATA
CGAGAAAGAGAGTGGGTCAAGTAATGAGGAAGAAACAATCAAGTTGACAC
TTAACGCTTGAAATTAATCTTAAAATTATCGCCCGTGATACTTAATGGTA
CtttgagcctaaaattgttcttatcctgttcttattacTAGGGCAAAGCT
GAGTTTTTTTAGGTTTGATATCCTACTTTTATCGATTTTTGTCCTTAATT
TGCTTAAAATTCAGTTATTCCAGGcttcttatttttcg Run BLAST on NCBI protein sequence of TCONS_00022894-protein >TCONS_00022894-protein ID=TCONS_00022894-protein|Name=TCONS_00022894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
HIMFLMGLLRNQADDQRRDEGESGGCTNSWTRNRGAIFEKILMIGAGVGQ
YFFQNNVFICPVKDYTEYALLILITPMLTLFCVSIIMGTNSSKIGNVLKS
CYKTRRLRIGRVCHTELVFNFLYYISISLITPMVWLIMCFLRKDIYLCAV
VGPLMYNGTKAAQIHLNDHRAASMKWGLGLLQGSVGAVIVIYIVKEVLKH
KRKNNANELKIYQRYQKRCAQQFFHQSAKQYIRHSLKNNIENLFSTKDVQ
QNNNTSSPLDVLENLESIWESMRAEYPGVCLECFDEGKGEDFFDGNAIEY
EKESGSSNEEETIKLTLNA Run BLAST on NCBI transcript from alignment at sc0000436:36322..39226+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022894 ID=TCONS_00022894|Name=TCONS_00022894|organism=Clytia hemisphaerica|type=transcript|length=2905bp|location=Sequence derived from alignment at sc0000436:36322..39226+ (Clytia hemisphaerica)
GCACATTATGTTTTTGATGGGATTACTTCGAAATCAGGTAGCTTTTTTAA
TTTCGATATCATGTTATAGATCAACTTTTGATGAACTCTGTGTATTGGAC
TTGCTACTtgagtctgaatcgcagacctatatagatatacttcctaaaTA
GGTATAAAGTATTAAAGCAGCCTCTATAAGAAGcacttttcgctagagga
tgagaaGAAGCGTAACTTTAGAGTATGACCATTCAAGGACAATCGTGAGA
gatttttggacaatttttttggGAATAATCAAGGATTTTTGCGTTAATTT
GAGTTTTTACTAAAAGGTTCTGTGGCGAAATGCTTTTCAAGTAGTATGTA
TGGGTTTTTATTCTGTTTTCTCATTTTATGGTCCCTCAAGACGtcaaaac
cagtttttgcctAGCTGGGGAAATTCCTATGGGGCATTATAGCGTAAGGT
CAGTTTGTGATAAAGCTTTAAGTGCAAATCTTCGAAGTCAGTCGTTCGTC
TCATTTGGTCCCCCAGAGAAATGGACGATATGTAATGTCCTCCAATATGC
AAATTCTTAAAATTCCGGAAAacggccgggtgaaaaataatattttgctg
ACTCGGCCACAGACTTCGTTAGTAGTtcgatacattagtattcagctcag
ggcttacttcatactgtttgcacataaaagttatctttaaagttctgtTT
CAATTGTCTTAAGTtgtcaaaatagcaaaaaaaacattttccggccggcc
gcatgagagcttttttccttgacccgcattccggaaacactacttttttt
tattttcgcctgacATCAgtatttttgggaatatttttgacaaaaaaaat
aaatttgggaGTTGCTTCTCGTAGAGTAGTATCGATTAGAGGTGTAGTTA
GTAGGGTATCCATGGCtagatcttgagatatttgagtttgaaattctgCT
GATTTAGCAGAAAAGGCCCGCAAAAATGCtgagtattttttttcttttcg
tcaAAACTGTCCAGagggaccatataatgagaaaTTAGAATATACTGGGT
CAACCAAGACCGCCACTGGACTAAATGAGGAATCTTAACCTGATATACGT
TTCATGTTTCAAATTATCGAAAAAGCACAATTAATCTTAAAGGTGACGAG
TTCTCTCAAGGTCGAGTTAATTAATCTTGACAAGCTTAATTAGATCTGAT
TTGAGCTCTTGATAACGCTTTTGAAAACAACTTGATATCTATCTGTACAC
TGTGCGTTAGTTGCTTGAAGTTTCTTTACCTTCATGTAGAGTACTGTTTT
GTTTTAAACTGACGCTCGTAGATATTTTCAGAATGGAGGTAGGTATAATA
TTTAATTAAGTTAAAATAAGATAACTTTAGATGAAACATTTACTTTTGAG
TCTGTTTTTCAATGTCATTCCTCAAACACAAAAACTGCCATTGGTGATTT
AATACAAGAATGGTTTTTAACTTCACCTCTTCTTACTTCCAGGCTGACGA
TCAAAGACGAGATGAAGGTGAATCAGGAGGCTGCACAAATTCCTGGACTC
GAAACCGAGGAGCGAtctttgagaaaattttaatgatTGGGGCAGGAGTT
GGGcaatatttctttcaaaataatgtttttatctGCCCAGTGAAGGATTA
TACTGAATACGcccttctcattttgatcaCGCCCATGTTGACTTTATTCT
GTGTTTCGATCATCATGGGAACAAACTCATCGAAAATTGGAAATGTCTTG
AAAAGCTGTTATAAAACTAGACGATTGCGTATTGGGCGTGTGTGCCACAC
AGAGCTagttttcaactttttgtactATATCTCAATCAGTTTAATCACAC
CGATGGTTTGGTTGATCATGTGTTTTCTTCGGAAGGACATCTATCTGTGT
GCTGTGGTGGGTCCTTTGATGTACAATGGTACTAAAGCAGCTCAGATACA
CTTGAATGATCACCGTGCGGCTTCAATGAAATGGGGTCTGGGTTTGCTAC
AAGGATCCGTTGGTGCAGTCATCGTCATCTATATTGTCAAAGAAGTATTG
AAgcataaaagaaaaaataatggtgcgtatttttcttctttcatatTTCC
ACTGTCGAAGCCTCAATCACAAATTTCATTCcttcatttattcattcatt
ctgACAATTTCCGAATGTCTTTAGGACACAATAAATTTGCCAATATTCTC
CCAAGCTTGTATCCAGAGTCATTTGTAcccttttttgattttacttcgGG
GCGTTTGACCTTGCGTGCCATCAAAATAATACAACAGCGGAACTAAGGGT
TTGAGTTTAGTGAGTACTATCAGATTAATGAAGTAGCGAACTATTAGAAC
TGGATTCAGtttacttttctctttttttaaacaGCCAATGAATTGAAGAT
TTATCAGAGATACCAAAAACGATGCGCTCAACAATTCTTCCATCAGTCAG
CTAAACAATACATCCGTCACTCACTCAAAAACAACATTGAGAATTTATTC
TCCACTAAAGATGTCCAGCAAAATAACAATACTTCTTCACCGTTGGATGT
TTTGGAGAATCTGGAATCCATCTGGGAATCAATGAGAGCTGAATATCCTG
GTGTTtgtttggaatgttttgatgAAGGAAAAGGGGAGGACTTCTTTGAT
GGGAATGCCATTGAATACGAGAAAGAGAGTGGGTCAAGTAATGAGGAAGA
AACAATCAAGTTGACACTTAACGCTTGAAATTAATCTTAAAATTATCGCC
CGTGATACTTAATGGTACtttgagcctaaaattgttcttatcctgttctt
attacTAGGGCAAAGCTGAGTTTTTTTAGGTTTGATATCCTACTTTTATC
GATTTTTGTCCTTAATTTGCTTAAAATTCAGTTATTCCAGGcttcttatt
tttcg Coding sequence (CDS) from alignment at sc0000436:36322..39226+ >TCONS_00022894 ID=TCONS_00022894|Name=TCONS_00022894|organism=Clytia hemisphaerica|type=CDS|length=2880bp|location=Sequence derived from alignment at sc0000436:36322..39226+ (Clytia hemisphaerica)
CACATTATGTTTTTGATGGGATTACTTCGAAATCAGGCTGACGATCAAAG
ACGAGATGAAGGTGAATCAGGAGGCTGCACAAATTCCTGGACTCGAAACC
GAGGAGCGAtctttgagaaaattttaatgatTGGGGCAGGAGTTGGGcaa
tatttctttcaaaataatgtttttatctGCCCAGTGAAGGATTATACTGA
ATACGcccttctcattttgatcaCGCCCATGTTGACTTTATTCTGTGTTT
CGATCATCATGGGAACAAACTCATCGAAAATTGGAAATGTCTTGAAAAGC
TGTTATAAAACTAGACGATTGCGTATTGGGCGTGTGTGCCACACAGAGCT
agttttcaactttttgtactATATCTCAATCAGTTTAATCACACCGATGG
TTTGGTTGATCATGTGTTTTCTTCGGAAGGACATCTATCTGTGTGCTGTG
GTGGGTCCTTTGATGTACAATGGTACTAAAGCAGCTCAGATACACTTGAA
TGATCACCGTGCGGCTTCAATGAAATGGGGTCTGGGTTTGCTACAAGGAT
CCGTTGGTGCAGTCATCGTCATCTATATTGTCAAAGAAGTATTGAAgcat
aaaagaaaaaataatgCCAATGAATTGAAGATTTATCAGAGATACCAAAA
ACGATGCGCTCAACAATTCTTCCATCAGTCAGCTAAACAATACATCCGTC
ACTCACTCAAAAACAACATTGAGAATTTATTCTCCACTAAAGATGTCCAG
CAAAATAACAATACTTCTTCACCGTTGGATGTTTTGGAGAATCTGGAATC
CATCTGGGAATCAATGAGAGCTGAATATCCTGGTGTTtgtttggaatgtt
ttgatgAAGGAAAAGGGGAGGACTTCTTTGATGGGAATGCCATTGAATAC
GAGAAAGAGAGTGGGTCAAGTAATGAGGAAGAAACAATCAAGTTGACACT
TAACGCTTGACACATTATGTTTTTGATGGGATTACTTCGAAATCAGGCTG
ACGATCAAAGACGAGATGAAGGTGAATCAGGAGGCTGCACAAATTCCTGG
ACTCGAAACCGAGGAGCGAtctttgagaaaattttaatgatTGGGGCAGG
AGTTGGGcaatatttctttcaaaataatgtttttatctGCCCAGTGAAGG
ATTATACTGAATACGcccttctcattttgatcaCGCCCATGTTGACTTTA
TTCTGTGTTTCGATCATCATGGGAACAAACTCATCGAAAATTGGAAATGT
CTTGAAAAGCTGTTATAAAACTAGACGATTGCGTATTGGGCGTGTGTGCC
ACACAGAGCTagttttcaactttttgtactATATCTCAATCAGTTTAATC
ACACCGATGGTTTGGTTGATCATGTGTTTTCTTCGGAAGGACATCTATCT
GTGTGCTGTGGTGGGTCCTTTGATGTACAATGGTACTAAAGCAGCTCAGA
TACACTTGAATGATCACCGTGCGGCTTCAATGAAATGGGGTCTGGGTTTG
CTACAAGGATCCGTTGGTGCAGTCATCGTCATCTATATTGTCAAAGAAGT
ATTGAAgcataaaagaaaaaataatgCCAATGAATTGAAGATTTATCAGA
GATACCAAAAACGATGCGCTCAACAATTCTTCCATCAGTCAGCTAAACAA
TACATCCGTCACTCACTCAAAAACAACATTGAGAATTTATTCTCCACTAA
AGATGTCCAGCAAAATAACAATACTTCTTCACCGTTGGATGTTTTGGAGA
ATCTGGAATCCATCTGGGAATCAATGAGAGCTGAATATCCTGGTGTTtgt
ttggaatgttttgatgAAGGAAAAGGGGAGGACTTCTTTGATGGGAATGC
CATTGAATACGAGAAAGAGAGTGGGTCAAGTAATGAGGAAGAAACAATCA
AGTTGACACTTAACGCTTGACACATTATGTTTTTGATGGGATTACTTCGA
AATCAGGCTGACGATCAAAGACGAGATGAAGGTGAATCAGGAGGCTGCAC
AAATTCCTGGACTCGAAACCGAGGAGCGAtctttgagaaaattttaatga
tTGGGGCAGGAGTTGGGcaatatttctttcaaaataatgtttttatctGC
CCAGTGAAGGATTATACTGAATACGcccttctcattttgatcaCGCCCAT
GTTGACTTTATTCTGTGTTTCGATCATCATGGGAACAAACTCATCGAAAA
TTGGAAATGTCTTGAAAAGCTGTTATAAAACTAGACGATTGCGTATTGGG
CGTGTGTGCCACACAGAGCTagttttcaactttttgtactATATCTCAAT
CAGTTTAATCACACCGATGGTTTGGTTGATCATGTGTTTTCTTCGGAAGG
ACATCTATCTGTGTGCTGTGGTGGGTCCTTTGATGTACAATGGTACTAAA
GCAGCTCAGATACACTTGAATGATCACCGTGCGGCTTCAATGAAATGGGG
TCTGGGTTTGCTACAAGGATCCGTTGGTGCAGTCATCGTCATCTATATTG
TCAAAGAAGTATTGAAgcataaaagaaaaaataatgCCAATGAATTGAAG
ATTTATCAGAGATACCAAAAACGATGCGCTCAACAATTCTTCCATCAGTC
AGCTAAACAATACATCCGTCACTCACTCAAAAACAACATTGAGAATTTAT
TCTCCACTAAAGATGTCCAGCAAAATAACAATACTTCTTCACCGTTGGAT
GTTTTGGAGAATCTGGAATCCATCTGGGAATCAATGAGAGCTGAATATCC
TGGTGTTtgtttggaatgttttgatgAAGGAAAAGGGGAGGACTTCTTTG
ATGGGAATGCCATTGAATACGAGAAAGAGAGTGGGTCAAGTAATGAGGAA
GAAACAATCAAGTTGACACTTAACGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022894-exon-sc0000436-1491911889:36322..36358 | TCONS_00022894-exon-sc0000436-1491911889:36322..36358 | Clytia hemisphaerica | exon |
| TCONS_00022894-exon-sc0000436-1510915933:36322..36358 | TCONS_00022894-exon-sc0000436-1510915933:36322..36358 | Clytia hemisphaerica | exon |
| TCONS_00022894-exon-sc0000436-1575043694:36322..36358 | TCONS_00022894-exon-sc0000436-1575043694:36322..36358 | Clytia hemisphaerica | exon |
| TCONS_00022894-exon-sc0000436-1491911889:37814..38393 | TCONS_00022894-exon-sc0000436-1491911889:37814..38393 | Clytia hemisphaerica | exon |
| TCONS_00022894-exon-sc0000436-1510915933:37814..38393 | TCONS_00022894-exon-sc0000436-1510915933:37814..38393 | Clytia hemisphaerica | exon |
| TCONS_00022894-exon-sc0000436-1575043694:37814..38393 | TCONS_00022894-exon-sc0000436-1575043694:37814..38393 | Clytia hemisphaerica | exon |
| TCONS_00022894-exon-sc0000436-1491911889:38706..39226 | TCONS_00022894-exon-sc0000436-1491911889:38706..39226 | Clytia hemisphaerica | exon |
| TCONS_00022894-exon-sc0000436-1510915933:38706..39226 | TCONS_00022894-exon-sc0000436-1510915933:38706..39226 | Clytia hemisphaerica | exon |
| TCONS_00022894-exon-sc0000436-1575043694:38706..39226 | TCONS_00022894-exon-sc0000436-1575043694:38706..39226 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000436 | supercontig | sc0000436:36322..39226 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029569 | FAM26 |
Blast
The following BLAST results are available for this feature:
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