TCONS_00022883 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022883
Unique NameTCONS_00022883
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022883 ID=TCONS_00022883|Name=TCONS_00022883|organism=Clytia hemisphaerica|type=transcript|length=566bp
atttcccatccagaacgcccctagaacgcgccgcaatcatgacgacaaAT
TGTATGCGAacagttcctttgtttttgaggactgtatttttttaaatcta
gcgatagattttactttcaatcctgcatttatgtaaaaaccacgcgcggg
cgttctggatggcaaataagtggcttcatttctcatccaggactctcgag
tctagcccttcgggcttggaagtcaatggttaGGACCGAAAATGAAACAT
TCTAATCTAATCTAGAAGTTTCGATAGTTATTGCGAAATAACAATGTCTG
ATTTCTGATCACCAGTCACGTAAAGTCTAAACATTCTATCTAATCTCACT
GTGATTATAAGGTATTTTAACTGTCAGAGCCTGTTTTGATTGGAGGTCAC
AAAGTCACACCTAAAATAGgtatatttcttttgaaatctGTTAGAATTAA
CTTATTTTACTTAGACCAAGAACCAAGTTTTCCTGAACAGATAAACGTCT
GGTAGAAAAAtacatttaatatttaatagGTAACAGCTGTGCCAAAACCA
TCATCAATTCACGAGA
Run BLAST on NCBI

transcript from alignment at sc0000435:89611..90176

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022883 ID=TCONS_00022883|Name=TCONS_00022883|organism=Clytia hemisphaerica|type=transcript|length=566bp|location=Sequence derived from alignment at sc0000435:89611..90176 (Clytia hemisphaerica)
TCTCGTGAATTGATGATGGTTTTGGCACAGCTGTTACctattaaatatta
aatgtaTTTTTCTACCAGACGTTTATCTGTTCAGGAAAACTTGGTTCTTG
GTCTAAGTAAAATAAGTTAATTCTAACagatttcaaaagaaatatacCTA
TTTTAGGTGTGACTTTGTGACCTCCAATCAAAACAGGCTCTGACAGTTAA
AATACCTTATAATCACAGTGAGATTAGATAGAATGTTTAGACTTTACGTG
ACTGGTGATCAGAAATCAGACATTGTTATTTCGCAATAACTATCGAAACT
TCTAGATTAGATTAGAATGTTTCATTTTCGGTCCtaaccattgacttcca
agcccgaagggctagactcgagagtcctggatgagaaatgaagccactta
tttgccatccagaacgcccgcgcgtggtttttacataaatgcaggattga
aagtaaaatctatcgctagatttaaaaaaatacagtcctcaaaaacaaag
gaactgtTCGCATACAATttgtcgtcatgattgcggcgcgttctaggggc
gttctggatgggaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012861XLOC_012861Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022883-exon-sc0000435-1491911889:89611..90176TCONS_00022883-exon-sc0000435-1491911889:89611..90176Clytia hemisphaericaexon
TCONS_00022883-exon-sc0000435-1510915933:89611..90176TCONS_00022883-exon-sc0000435-1510915933:89611..90176Clytia hemisphaericaexon
TCONS_00022883-exon-sc0000435-1575043694:89611..90176TCONS_00022883-exon-sc0000435-1575043694:89611..90176Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000435supercontigsc0000435:89611..90176 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.20285	0.496418	0.948539	0.493504	3.90169	1.81683	1.57908	1.96792	1.08427	0.631109	0.419337	0.551339	0.732769	1.59422	0.525414	0.62043	0.677294	0.777717	0.228164	0.244487	0.918495	1.30007	0.797609	0	1.63043	2.47535	0.681331	0.148393	0.112417	0.449518
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022883 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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