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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022879 ID=TCONS_00022879|Name=TCONS_00022879|organism=Clytia hemisphaerica|type=transcript|length=1378bp
ctttgATTTCGGCctaattttcagcctcgtgttcttatcaaatctttctt
ataaaaaaggtgtgTATCTAAAGAAGATTGATTAGAAATAATAAATATAC
ACCGCTACTAAAAACCTAAAAGATTTAATAATCAGCTCGCATTCTTTATT
CGAAGTCTTTTGATACGGTACCTTTTTATTAAAACATGCCTTTCCCTTTT
GCttatcctctagcgaaaaggtTTCATGTACGCATTACTTTAATTCAATT
CTCTGGTTGATCTTTTTTTCCACTCCTTTCAAGCGTTGTACTTGGAAATA
CGCCCGCGTGTTCTGTTCTGGGTGAAATACCATACGGAAAGCCTTTTGTC
CGTAAAGTAGGAGCGTGATAACGACAGTATTGATCAAAATTGCAATACAt
tgtgaaatttctttttcgattgGTTTTTGAAACGGAACAATGATAAAACA
GACTGCAAACGAAGCGGTCAGTATAAAAGTTGCATACATCAGCATAATAC
CATCATTCATGACGCTTGGTAGATTTCTTCCACGGAAAGCTTGTATTGCA
CACATAAGTTGGATAACGGTTAAGGCGATCATTACCATAGTGCTGTGAAA
ATAAGTGTTACAAACTTGTTCTCTTGTCAGTTGATCATGGTTTTCAATTT
CCAGTATTTTTGCCGGCTCTTGATGGAGACTTACATATAATACGATGTTA
GtaagtaaaagaaaattgacaacAGTGAAAATTTGTGTTATCATTGTACG
TTTAACTTCTTCACTAGTTATTCGGACTTTActgagaaaagcttgtaaaa
tcTTTTGTGATTTGGTGAAAACAATACCAATATTGAGGGTGTATAAAGTT
GTCAAAATTAATGGTTTTGTTATGCAGCTCATTCTTGTGAGAAATACAAT
GGGTGTGATGATGAATGTCAAACCTTGCATTGACAGGTGTAAAATAGAAA
CCTTAAAATCTGATGCCATCACaattggtgtttttttcttcactatGAAA
ATCACTAATATTATCACCACTATTAAAGATGCAAGAATTGAAATTGTTTT
AATGATATAAAATCCTTTGATGGAATGATCCATTACTACAATATTTGTAT
AGGGGTCTATACAAGCTGTTCTTTTGTCGTTACTGGTTGGAAATCTTCCA
CCACATCGATTACATTTGTGATTTCCAGCATCgggtttgaaatgtttttt
tgcgCAAGCCTTACATCCCCAAGAGAAACCATGCTGGATTTTTTCGTACG
ACTTATAGAAACCAGGTGGACAATGAATGTTTGGACAATGACTGGTTTCC
ACACGAGGAATTcctgaaaatcaagaaatataaAGGATGTTCCTCAAAAT
GAAGCATTTATACCGGTTTTCATATTTC Run BLAST on NCBI protein sequence of TCONS_00022879-protein >TCONS_00022879-protein ID=TCONS_00022879-protein|Name=TCONS_00022879-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
MDHSIKGFYIIKTISILASLIVVIILVIFIVKKKTPIVMASDFKVSILHL
SMQGLTFIITPIVFLTRMSCITKPLILTTLYTLNIGIVFTKSQKILQAFL
SKVRITSEEVKRTMITQIFTVVNFLLLTNIVLYVSLHQEPAKILEIENHD
QLTREQVCNTYFHSTMVMIALTVIQLMCAIQAFRGRNLPSVMNDGIMLMY
ATFILTASFAVCFIIVPFQKPIEKEISQCIAILINTVVITLLLYGQKAFR
MVFHPEQNTRAYFQVQRLKGVEKKINQRIELK Run BLAST on NCBI transcript from alignment at sc0000435:8176..9553 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022879 ID=TCONS_00022879|Name=TCONS_00022879|organism=Clytia hemisphaerica|type=transcript|length=1378bp|location=Sequence derived from alignment at sc0000435:8176..9553 (Clytia hemisphaerica)
GAAATATGAAAACCGGTATAAATGCTTCATTTTGAGGAACATCCTttata
tttcttgattttcaggAATTCCTCGTGTGGAAACCAGTCATTGTCCAAAC
ATTCATTGTCCACCTGGTTTCTATAAGTCGTACGAAAAAATCCAGCATGG
TTTCTCTTGGGGATGTAAGGCTTGcgcaaaaaaacatttcaaacccGATG
CTGGAAATCACAAATGTAATCGATGTGGTGGAAGATTTCCAACCAGTAAC
GACAAAAGAACAGCTTGTATAGACCCCTATACAAATATTGTAGTAATGGA
TCATTCCATCAAAGGATTTTATATCATTAAAACAATTTCAATTCTTGCAT
CTTTAATAGTGGTGATAATATTAGTGATTTTCatagtgaagaaaaaaaca
ccaattGTGATGGCATCAGATTTTAAGGTTTCTATTTTACACCTGTCAAT
GCAAGGTTTGACATTCATCATCACACCCATTGTATTTCTCACAAGAATGA
GCTGCATAACAAAACCATTAATTTTGACAACTTTATACACCCTCAATATT
GGTATTGTTTTCACCAAATCACAAAAgattttacaagcttttctcagTAA
AGTCCGAATAACTAGTGAAGAAGTTAAACGTACAATGATAACACAAATTT
TCACTgttgtcaattttcttttacttaCTAACATCGTATTATATGTAAGT
CTCCATCAAGAGCCGGCAAAAATACTGGAAATTGAAAACCATGATCAACT
GACAAGAGAACAAGTTTGTAACACTTATTTTCACAGCACTATGGTAATGA
TCGCCTTAACCGTTATCCAACTTATGTGTGCAATACAAGCTTTCCGTGGA
AGAAATCTACCAAGCGTCATGAATGATGGTATTATGCTGATGTATGCAAC
TTTTATACTGACCGCTTCGTTTGCAGTCTGTTTTATCATTGTTCCGTTTC
AAAAACcaatcgaaaaagaaatttcacaaTGTATTGCAATTTTGATCAAT
ACTGTCGTTATCACGCTCCTACTTTACGGACAAAAGGCTTTCCGTATGGT
ATTTCACCCAGAACAGAACACGCGGGCGTATTTCCAAGTACAACGCTTGA
AAGGAGTGGAAAAAAAGATCAACCAGAGAATTGAATTAAAGTAATGCGTA
CATGAAaccttttcgctagaggataaGCAAAAGGGAAAGGCATGTTTTAA
TAAAAAGGTACCGTATCAAAAGACTTCGAATAAAGAATGCGAGCTGATTA
TTAAATCTTTTAGGTTTTTAGTAGCGGTGTATATTTATTATTTCTAATCA
ATCTTCTTTAGATAcacaccttttttataagaaagatttgataagaacac
gaggctgaaaattagGCCGAAATcaaag Coding sequence (CDS) from alignment at sc0000435:8176..9553 >TCONS_00022879 ID=TCONS_00022879|Name=TCONS_00022879|organism=Clytia hemisphaerica|type=CDS|length=849bp|location=Sequence derived from alignment at sc0000435:8176..9553 (Clytia hemisphaerica)
ATGGATCATTCCATCAAAGGATTTTATATCATTAAAACAATTTCAATTCT
TGCATCTTTAATAGTGGTGATAATATTAGTGATTTTCatagtgaagaaaa
aaacaccaattGTGATGGCATCAGATTTTAAGGTTTCTATTTTACACCTG
TCAATGCAAGGTTTGACATTCATCATCACACCCATTGTATTTCTCACAAG
AATGAGCTGCATAACAAAACCATTAATTTTGACAACTTTATACACCCTCA
ATATTGGTATTGTTTTCACCAAATCACAAAAgattttacaagcttttctc
agTAAAGTCCGAATAACTAGTGAAGAAGTTAAACGTACAATGATAACACA
AATTTTCACTgttgtcaattttcttttacttaCTAACATCGTATTATATG
TAAGTCTCCATCAAGAGCCGGCAAAAATACTGGAAATTGAAAACCATGAT
CAACTGACAAGAGAACAAGTTTGTAACACTTATTTTCACAGCACTATGGT
AATGATCGCCTTAACCGTTATCCAACTTATGTGTGCAATACAAGCTTTCC
GTGGAAGAAATCTACCAAGCGTCATGAATGATGGTATTATGCTGATGTAT
GCAACTTTTATACTGACCGCTTCGTTTGCAGTCTGTTTTATCATTGTTCC
GTTTCAAAAACcaatcgaaaaagaaatttcacaaTGTATTGCAATTTTGA
TCAATACTGTCGTTATCACGCTCCTACTTTACGGACAAAAGGCTTTCCGT
ATGGTATTTCACCCAGAACAGAACACGCGGGCGTATTTCCAAGTACAACG
CTTGAAAGGAGTGGAAAAAAAGATCAACCAGAGAATTGAATTAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022879-exon-sc0000435-1491911889:8176..9553 | TCONS_00022879-exon-sc0000435-1491911889:8176..9553 | Clytia hemisphaerica | exon |
| TCONS_00022879-exon-sc0000435-1510915933:8176..9553 | TCONS_00022879-exon-sc0000435-1510915933:8176..9553 | Clytia hemisphaerica | exon |
| TCONS_00022879-exon-sc0000435-1575043694:8176..9553 | TCONS_00022879-exon-sc0000435-1575043694:8176..9553 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000435 | supercontig | sc0000435:8176..9553 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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