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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022878 ID=TCONS_00022878|Name=TCONS_00022878|organism=Clytia hemisphaerica|type=transcript|length=711bp
TTTTCATTGTACATGATGTCAACTATCTGTTTGATGATTTCCAATTGTCC
AGTCTCATCTCCAATAGTAATcacggctggtttatttttcttaaaccACT
TTGGTGTGAGATGTTTTTCTTCACTTATATTCCATAATCCACTTACTTGT
TTGAATTGGATACATAATTCTGATTGGACAGCTTTCCGTGTTAAGATTCC
atataatgacgtcattgttgtAGGTTGAACATTCAAAACAAGAAGACATT
CCCAATTCAAGCGATGCGTGACTATATAAAAAAGAATATCTGCATACATT
TGAAAATGATTATCATCAATAGACGAATCAAAGGACACATGTTTGCCAGT
AAATCTTATATCACCAAAAAAGGAAGATTCTAGGTAGTGCATCATTGTTG
GTGGTACATCGGCATAAATTACAATAATGTTTGATAAGCTATATGTTTTG
TTTAGCGTTATAGACCAAGCGTTGTAATGATAAGTCTCGTTTAGATGAAC
AGATTCAACTATCTGTGGAAGTTTATAGAAATCGTTACAAACGTCAATAG
AAATATAGGTCACATTGATAAAACCTTTTCTATACGTCTTTGTATACCCG
AATCTCCTATGTGCCCTTTGTTGCCACATATACTCAACTGTTTTGTCCAA
ATCCGCGGCGAAATGGTTTGCGCTCGTTCTATTGGTTTCATTGTAGCATG
CAGAATATATT Run BLAST on NCBI protein sequence of TCONS_00022878-protein >TCONS_00022878-protein ID=TCONS_00022878-protein|Name=TCONS_00022878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
IYSACYNETNRTSANHFAADLDKTVEYMWQQRAHRRFGYTKTYRKGFINV
TYISIDVCNDFYKLPQIVESVHLNETYHYNAWSITLNKTYSLSNIIVIYA
DVPPTMMHYLESSFFGDIRFTGKHVSFDSSIDDNHFQMYADILFYIVTHR
LNWECLLVLNVQPTTMTSLYGILTRKAVQSELCIQFKQVSGLWNISEEKH
LTPKWFKKNKPAVITIGDETGQLEIIKQIVDIMYNE Run BLAST on NCBI transcript from alignment at sc0000435:3996..4706 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022878 ID=TCONS_00022878|Name=TCONS_00022878|organism=Clytia hemisphaerica|type=transcript|length=711bp|location=Sequence derived from alignment at sc0000435:3996..4706 (Clytia hemisphaerica)
AATATATTCTGCATGCTACAATGAAACCAATAGAACGAGCGCAAACCATT
TCGCCGCGGATTTGGACAAAACAGTTGAGTATATGTGGCAACAAAGGGCA
CATAGGAGATTCGGGTATACAAAGACGTATAGAAAAGGTTTTATCAATGT
GACCTATATTTCTATTGACGTTTGTAACGATTTCTATAAACTTCCACAGA
TAGTTGAATCTGTTCATCTAAACGAGACTTATCATTACAACGCTTGGTCT
ATAACGCTAAACAAAACATATAGCTTATCAAACATTATTGTAATTTATGC
CGATGTACCACCAACAATGATGCACTACCTAGAATCTTCCTTTTTTGGTG
ATATAAGATTTACTGGCAAACATGTGTCCTTTGATTCGTCTATTGATGAT
AATCATTTTCAAATGTATGCAGATATTCTTTTTTATATAGTCACGCATCG
CTTGAATTGGGAATGTCTTCTTGTTTTGAATGTTCAACCTacaacaatga
cgtcattatatGGAATCTTAACACGGAAAGCTGTCCAATCAGAATTATGT
ATCCAATTCAAACAAGTAAGTGGATTATGGAATATAAGTGAAGAAAAACA
TCTCACACCAAAGTggtttaagaaaaataaaccagccgtgATTACTATTG
GAGATGAGACTGGACAATTGGAAATCATCAAACAGATAGTTGACATCATG
TACAATGAAAA Coding sequence (CDS) from alignment at sc0000435:3996..4706 >TCONS_00022878 ID=TCONS_00022878|Name=TCONS_00022878|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at sc0000435:3996..4706 (Clytia hemisphaerica)
ATATATTCTGCATGCTACAATGAAACCAATAGAACGAGCGCAAACCATTT
CGCCGCGGATTTGGACAAAACAGTTGAGTATATGTGGCAACAAAGGGCAC
ATAGGAGATTCGGGTATACAAAGACGTATAGAAAAGGTTTTATCAATGTG
ACCTATATTTCTATTGACGTTTGTAACGATTTCTATAAACTTCCACAGAT
AGTTGAATCTGTTCATCTAAACGAGACTTATCATTACAACGCTTGGTCTA
TAACGCTAAACAAAACATATAGCTTATCAAACATTATTGTAATTTATGCC
GATGTACCACCAACAATGATGCACTACCTAGAATCTTCCTTTTTTGGTGA
TATAAGATTTACTGGCAAACATGTGTCCTTTGATTCGTCTATTGATGATA
ATCATTTTCAAATGTATGCAGATATTCTTTTTTATATAGTCACGCATCGC
TTGAATTGGGAATGTCTTCTTGTTTTGAATGTTCAACCTacaacaatgac
gtcattatatGGAATCTTAACACGGAAAGCTGTCCAATCAGAATTATGTA
TCCAATTCAAACAAGTAAGTGGATTATGGAATATAAGTGAAGAAAAACAT
CTCACACCAAAGTggtttaagaaaaataaaccagccgtgATTACTATTGG
AGATGAGACTGGACAATTGGAAATCATCAAACAGATAGTTGACATCATGT
ACAATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022878-exon-sc0000435-1491911889:3996..4706 | TCONS_00022878-exon-sc0000435-1491911889:3996..4706 | Clytia hemisphaerica | exon |
| TCONS_00022878-exon-sc0000435-1510915933:3996..4706 | TCONS_00022878-exon-sc0000435-1510915933:3996..4706 | Clytia hemisphaerica | exon |
| TCONS_00022878-exon-sc0000435-1575043694:3996..4706 | TCONS_00022878-exon-sc0000435-1575043694:3996..4706 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000435 | supercontig | sc0000435:3996..4706 . |
Blast
The following BLAST results are available for this feature:
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