TCONS_00022876 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022876
Unique NameTCONS_00022876
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length962

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022876 ID=TCONS_00022876|Name=TCONS_00022876|organism=Clytia hemisphaerica|type=transcript|length=962bp
ttttttttcttttgagttattattattattattatttttttatttttatt
ttagcctCCCAtcttctctttctctctctttATGCCTAAGCCTAAAAAAA
CAACTAACAAAAAGCGCAATATTAAAAACCCCTGTGGTATCTGTTCTAAC
CCTGTAGCAACCACTCATAGAGCTGTTTGGTGTGATAACTGTAATTCCTG
GATTCACATCAAATGTAATAACACCTCAAAATCTGAATATGAACACTTGC
AGCTAGATGACGGTACATGGCTATGCCAAAGATGTTTTAACTTGGAAGTA
CCATTTGGACGCATTTCACATGAAGATCTTAAACTCACCCTTCAAGATAT
TCTCCTGTTCACGAAGGTACAAGACAATCACCAAAGAAACTTGAACCTCC
TACAACAAACACGGTAAAGTATGGCTCTTACAATGTAGCTTCCCTAATAA
CTAAGGATTGGAACGAACTTCATACCAAGGTTTTGATTGAAGACTTTAAC
AAATGCTCCAAACAAACTCTCAAAGAACATTTACATCGATTTATTATAAC
TAAGCTCGCATCTGATTAGAACTTAGGCTCCTTCACTTTCCTATTCTCTT
TATACTCTTCATTACTTCTTTCTGTCttcctttttattattatttttata
ttttacatttttctttctctGGTCTGAACTTGCCAAATTTATCTTTAGTG
AATGCTAAACTTAGGTTACTCCGAGGTCACTAGTTTGTTGGAACTATCTT
CGTTGTCTCCCCTCCGTTTTCTCATTTACTCCCTCTTACTAGTATATGGA
TTTAGATATATCATTTTATAACAAAGTATCATCACAACTTGTGCtagttt
ttaaatgtaaattccactttgttcatattttacatattttacatCCATTT
GTACATTATATTTAGGATGAGAGTATCGGTAAATATATTCTATATCCTAT
CCTAtcctttcg
Run BLAST on NCBI

transcript from alignment at sc0000435:238963..242745-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022876 ID=TCONS_00022876|Name=TCONS_00022876|organism=Clytia hemisphaerica|type=transcript|length=3783bp|location=Sequence derived from alignment at sc0000435:238963..242745- (Clytia hemisphaerica)
TTTTTTTTCTTTTGAGTTATTATTATTATTATTATTTTTTTATTTTTATT
TTAGCCTCCCATCTTCTCTTTCTCTCTCTTTATGCCTAAGCCTAAAAAAA
CAACTAACAAAAAGCGCAATATTAAAAACCCCTGTGGTATCTGTTCTAAC
CCTGTAGCAACCACTCATAGAGCTGTTTGGTGTGATAACTGTAATTCCTG
GATTCACATCAAATGTAATAACACCTCAAAATCTGAATATGAACACTTGC
AGCTAGATGACGGTACATGGCTATGCCAAAGATGTTTTAACTTGGAAGTA
CCATTTGGACGCATTTCACATGAAGATCTTAAACTCACCCTTCAAGGTAA
GAACTTTGATTTGGTCCTTGACCCTAGCAATGACATAAACCTACAATTCT
TCAAAGACATAGACTCTGCACTGAATCAAGAGGAAGTTGAAAACAATCTT
CTCAATTTTGAATGTCCTTATCTCTCTCTTAGTGAAGTAAACCAAAAACA
TAAAAACAATGACTCCATTTCGGCATTACATTTAAATATCGCTTCCCTTA
AACTTCATCATGGCGAACTCAAAACAATTCTCGGCAGCTGTGATATTCCC
TTTAATTTCATTGGTATAACCGAAACAGGCTTTAAAGATGAAATTTCTGC
TCAAAGTTCTGCTGAACTTACCAACTACAATCACTTTGACTGCTGCACCA
AGTCTAACCGAGGAGGTGCTAGAATCTATGTCTCTGAAGGATTTCACTCT
ATCCCAAGATCTGACCTAGTTATCTATAAGGAAAATGAAATTGAATCTGT
AGTCAGAGAAATTGTCTATGATCAAAATTTTATTGTTGCTTGTATCTACA
AACATCCAGAAGCTGATACCACTAACTTTCAATCCCTATACTCAAATTTA
CTTGATAAAATCGTATCAGAAAAGAAAAAAGCCATAATATTAGGTGATTT
CAATCTGGATCTATTACAAGTAGACTCTAAACCTCACATAGAAGATTTCC
TTAACAGTAACTTATCTCATTTCTTCTTTCCTACAATTACAAGACCTACC
AGGATAACTCCATACTCAAAAACACTCATTGACAATATTTTTTCAAGTTT
TGTTACCACTGATATGTTCTCTTGTAACCTTATCAGCTCTATATCTGACC
ATCTCCCTCAGATTCTAAAGTTAAACCTCAAACCCAAAAAAGCTCCCAAA
ATTAAGATTTCTAAAAGGGACATGAGAAATTTCAACAAAGACGATTTTGT
AATGGACTTTCTGACTCTTGATTGGGTCAATCTTTTCCAAAACAAAAATA
ACTCTGATAAACTAGAATCTTTCATAATCGAGGTCAACAAGGTTATTGAT
AACCATGCTCCAATGAAACATACCTGGAAAAAATCTTCACAACCAAAAAA
CCCCTGGATTACTAAAGGCTTGTTGAAGTCAATCACTATTAAGAATTCTC
TCTACAAAAAATTCTTGAAAGCCAGAGATCCTGTTCTCAAAGCTCAAAAA
CATATTAACTTCAAAAAATATAGAAATCTGCTTTCAAAACTTCTACGAAT
AAGTAAAAACAAGTACTACAATAACTTTTTCTCTGAAAACAAACATGATC
TTAAAAAAAAGTGGAATGTAGTTAATGAAATAATTGGCACCAAAACTAAA
TCTGATCTTTCGCCTAAACTCTTACTACACAACAATCAAGAAATAACCAA
CGATAAAGACATAGCTGAAACTTTCAACAATTTTTATGGATCAATAGCTG
AACATACTAAAAATCAAATACCTCGAACTGATAAATACTTTGCTGATTAT
CTAGGAGATCCATTAGCTAACTCTATTCGTTTCACACAGATTACACCTAC
TGCGGTACTTAAACTCATCAATGATCTTGATGTTCAAAAAGCATCTGGAC
CCTCAAGTATTCCTACACCCTTCTTAAAAATGATAGCTCCAACTGCAAGC
ACCATTCTATCTCATATCTTCAATGTCAGTATTAGAGAAGGTATCTACCC
TGATTGTCTAAAAAAAGCTAATATAAAACCCTTACATAAGAAAGACTCAA
AACTGGATGTTGGCAATTACAGACCCATCTCACTGTTATCCAACATCAAT
AAAATATTTGAAAAACTTCTTCACTTTAGACTAGTCAAGTTCTTTGAAAA
CAACAATATCTTTAGCGAAAAACAATTTGGTTTTAGAAAGGGTCACAGCA
CTAATCATGCAGTGATTGCACTTACTGAACTAGTCAGAACAGCGCTAGAT
AATGGTCAGTTTGCAGCTGGAGTCTTCATAGATCTTAAAAAGGCTTTTGA
CACAGTGGAGCACACCATCCTGCTCCACAAATTAGTACATTATGGCATTA
GGGGACCAGCTCTGGCTCTGCTTCGGTCATATCTCTCAAATCGTACCCAT
TGTGTTGAAATAAGAAATTCCCACTCTAATCATGTTCCAATCAAACATGG
TGTCCCACAAGGATCTGTCTTGGGGCCCCTATTATTCATCATTTATATTA
ATGATCTCCATCGGTCTTTAGAAAACTCAGTAACTATTCATTTTGCCGAT
GATACTAGTCTTATCTGCTGTGATGAATCTATAAAGCATTTGAACAGAAG
AGTTAACAGAGATCTTGCTCTCCTTGTTCATTGGCTGAGAGCAAACAAGA
TATGCCTTAACACCGCCAAAACTGAAATCATTCTTTTTAGAAGTCCCAGG
AAAACTTTTACTAAACATCTTAATTTCAGACTCAGTGGACAGAAGATTCA
ATTATCTAACAAAGCAAAATATCTTGGTATTCTACTTGATGAGCATCTTT
CTTGGGAACCTCAATTTCACAGCCTCACGAAAAAACTTTCTAGAACTGTT
GGCTTTCTCTCTAAACTCCGTCATTTTGTGGATCTCAAAACACTTCTTTC
TGTTTACTATGCTCTTTTTGACTCACACGTAAGCTATTGTCTCCAGACCA
TAGGCTATACCACTCAAGCTACATTTGAAAAAATTGAAGTACTTCAAAAT
AAGGCCTTGAGAATTATGCATTTCAAACATAACAGATTTTCATCTCGCCC
ACTTTTTATAAGATCTTCTATTCTGCCAATAAAAAAACAACTCAAAGTCA
AGAACTGCCTCTTTGCACTGGATCATGTCCAAAATAACTTACCTAAATAC
TTTTCAAACTACCTTAGATATTCTCCTGTTCACGAAGGTACAAGACAATC
ACCAAAGAAACTTGAACCTCCTACAACAAACACGGTAAAGTATGGCTCTT
ACAATGTAGCTTCCCTAATAACTAAGGATTGGAACGAACTTCATACCAAG
GTTTTGATTGAAGACTTTAACAAATGCTCCAAACAAACTCTCAAAGAACA
TTTACATCGATTTATTATAACTAAGCTCGCATCTGATTAGAACTTAGGCT
CCTTCACTTTCCTATTCTCTTTATACTCTTCATTACTTCTTTCTGTCTTC
CTTTTTATTATTATTTTTATATTTTACATTTTTCTTTCTCTGGTCTGAAC
TTGCCAAATTTATCTTTAGTGAATGCTAAACTTAGGTTACTCCGAGGTCA
CTAGTTTGTTGGAACTATCTTCGTTGTCTCCCCTCCGTTTTCTCATTTAC
TCCCTCTTACTAGTATATGGATTTAGATATATCATTTTATAACAAAGTAT
CATCACAACTTGTGCTAGTTTTTAAATGTAAATTCCACTTTGTTCATATT
TTACATATTTTACATCCATTTGTACATTATATTTAGGATGAGAGTATCGG
TAAATATATTCTATATCCTATCCTATCCTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012855XLOC_012855Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022876-exon-sc0000435-1575043694:242400..242745TCONS_00022876-exon-sc0000435-1575043694:242400..242745Clytia hemisphaericaexon
TCONS_00022876-exon-sc0000435-1575043694:238963..239578TCONS_00022876-exon-sc0000435-1575043694:238963..239578Clytia hemisphaericaexon
TCONS_00022876-exon-sc0000435-1510915933:242400..242745TCONS_00022876-exon-sc0000435-1510915933:242400..242745Clytia hemisphaericaexon
TCONS_00022876-exon-sc0000435-1510915933:238963..239578TCONS_00022876-exon-sc0000435-1510915933:238963..239578Clytia hemisphaericaexon
TCONS_00022876-exon-sc0000435-1491911889:242400..242745TCONS_00022876-exon-sc0000435-1491911889:242400..242745Clytia hemisphaericaexon
TCONS_00022876-exon-sc0000435-1491911889:238963..239578TCONS_00022876-exon-sc0000435-1491911889:238963..239578Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000435supercontigsc0000435:238963..242745 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.444164	0.597065	0.865994	0.678472	2.4776	0.805864	1.21118	1.5593	4.27375	3.79132	3.26568	3.40591	3.69705	2.52291	3.27696	2.39974	3.98411	3.36377	3.99846	5.9425	4.58585	7.11312	2.26828	3.12946	2.13158	2.87918	8.26301	6.75396	3.12737	3.40205
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top