TCONS_00022870 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022870
Unique NameTCONS_00022870
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1520

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022870 ID=TCONS_00022870|Name=TCONS_00022870|organism=Clytia hemisphaerica|type=transcript|length=1520bp
TCTGGTaacaatttctatttttcattcatCTCTGTACACATTTTTACGTT
TAGACTTTTCTAtctaaaaacattgaaaaaataatataagaaCAAATGGA
GCAAAATCAGACCCCAAAATAATATGGTCAAAGCAATGAAGACTTCGATC
ACATAGAACAAAAAGATTGGAAAACACTTTGTTTGTGAAGGAAGGTATGT
ctcttttaataaattttagTCGCTCCAGTCTGCATGCTGAGCagtaaaat
tatatttctctCATCTCTTATCACCCTGTGAACCATATAAATTCAATCAT
ATCTCAGCTAATAATCATACTGTGCGAAGCAAGTATTTTTCTTCTTGGTC
AGAAAAGTCAAATCATTCAATAGCTTTCAATAGCTTTCAATAAGATTTTT
CATTCATCCATGCAGTGCTTATTACTTATTTACAGCTACGTGTGGGCTTT
TGCAGTAAGCAATGTATACCTTCAGCAATAGTCATTTCTCAATCAATCTT
AGCTTTAAATATGTCTACAAATTTAGCAATTGTAAAATCTTTAATAAGCC
TCGTCAATAATTTTGAGTACTTTTCCTTCAGTATAATCGTTTCCCTCGAT
GTATTTAATAATTCGTTTCGCGACCTCTAAGGGTTGTTCCAACTTGTTTT
CTTCTTGTGCTTTTTGTGCTGACTTCTGCACTTTTTCATTACCACACTGG
TCAACGATCTTCAAGGTGCGATTAGTCTCCATGAGACCTACATGGTATTC
CAAAACTCGTAGTTTAGGATTCTCCATAGCCAAGGTTTCAGTGAAGGCTT
TGACAGCACTTGTAGCCATGCAGCTTGGTCCAAAATGAGTCTCAGGTGAT
GTCGAATCCATGCGTATTGTGTGAAGGAAGGTCCTCTTAGATGCTTTGAA
GATGCGTGCAAATTGACATGATAGATAGGTACGGGATGTGATGTTAAGAT
TCCAATACTTTGATAAGACATCTGGATCCTGGTAATCGTCCAGTGTTTTG
GATGTATCGCCAACATCTGATGCATTGTTGACGAAAATGACTTGCTCGTA
ATCTCTCTCTTGGTGATCTTCAATCTTCTCTGCTAACGATTTCATATCAT
ACACGTCACTCAAATCGAACACTTCAAGCTCAACTTCAATTTTACGATGC
TTTAAAAATTGCCTCATTTTTTTACCCGAAGTCTCTTTTAAGGCGTCCTC
ATCTTTATCAATTAAAATCACCTTGGAACCTGATAATGCATTTGGTAGAA
TTCCTTGATCTTGAAACGCCATACCAGCTATAGCTCGTCCTAAGCCATTA
CCGGCCCCAGTAATGAGGCAAAGAAATTTCCCTTTGGTCAAACCTTTACG
ACCAGTATCACGAGATGTCTTTGGACTCAAAATACTTTTATCCCATGGCG
CAGGTGTTAGAGAACTTCGTCTTCTTCCAGGATTAAACCCTTCAGCCATT
TTTGCTACTCATTAGATTTGCTTCTCAAAGTATTACTAATCTTTCCTATT
AAAGagtatcaacttttttt
Run BLAST on NCBI

transcript from alignment at sc0000435:158918..160437-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022870 ID=TCONS_00022870|Name=TCONS_00022870|organism=Clytia hemisphaerica|type=transcript|length=1520bp|location=Sequence derived from alignment at sc0000435:158918..160437- (Clytia hemisphaerica)
TCTGGTAACAATTTCTATTTTTCATTCATCTCTGTACACATTTTTACGTT
TAGACTTTTCTATCTAAAAACATTGAAAAAATAATATAAGAACAAATGGA
GCAAAATCAGACCCCAAAATAATATGGTCAAAGCAATGAAGACTTCGATC
ACATAGAACAAAAAGATTGGAAAACACTTTGTTTGTGAAGGAAGGTATGT
CTCTTTTAATAAATTTTAGTCGCTCCAGTCTGCATGCTGAGCAGTAAAAT
TATATTTCTCTCATCTCTTATCACCCTGTGAACCATATAAATTCAATCAT
ATCTCAGCTAATAATCATACTGTGCGAAGCAAGTATTTTTCTTCTTGGTC
AGAAAAGTCAAATCATTCAATAGCTTTCAATAGCTTTCAATAAGATTTTT
CATTCATCCATGCAGTGCTTATTACTTATTTACAGCTACGTGTGGGCTTT
TGCAGTAAGCAATGTATACCTTCAGCAATAGTCATTTCTCAATCAATCTT
AGCTTTAAATATGTCTACAAATTTAGCAATTGTAAAATCTTTAATAAGCC
TCGTCAATAATTTTGAGTACTTTTCCTTCAGTATAATCGTTTCCCTCGAT
GTATTTAATAATTCGTTTCGCGACCTCTAAGGGTTGTTCCAACTTGTTTT
CTTCTTGTGCTTTTTGTGCTGACTTCTGCACTTTTTCATTACCACACTGG
TCAACGATCTTCAAGGTGCGATTAGTCTCCATGAGACCTACATGGTATTC
CAAAACTCGTAGTTTAGGATTCTCCATAGCCAAGGTTTCAGTGAAGGCTT
TGACAGCACTTGTAGCCATGCAGCTTGGTCCAAAATGAGTCTCAGGTGAT
GTCGAATCCATGCGTATTGTGTGAAGGAAGGTCCTCTTAGATGCTTTGAA
GATGCGTGCAAATTGACATGATAGATAGGTACGGGATGTGATGTTAAGAT
TCCAATACTTTGATAAGACATCTGGATCCTGGTAATCGTCCAGTGTTTTG
GATGTATCGCCAACATCTGATGCATTGTTGACGAAAATGACTTGCTCGTA
ATCTCTCTCTTGGTGATCTTCAATCTTCTCTGCTAACGATTTCATATCAT
ACACGTCACTCAAATCGAACACTTCAAGCTCAACTTCAATTTTACGATGC
TTTAAAAATTGCCTCATTTTTTTACCCGAAGTCTCTTTTAAGGCGTCCTC
ATCTTTATCAATTAAAATCACCTTGGAACCTGATAATGCATTTGGTAGAA
TTCCTTGATCTTGAAACGCCATACCAGCTATAGCTCGTCCTAAGCCATTA
CCGGCCCCAGTAATGAGGCAAAGAAATTTCCCTTTGGTCAAACCTTTACG
ACCAGTATCACGAGATGTCTTTGGACTCAAAATACTTTTATCCCATGGCG
CAGGTGTTAGAGAACTTCGTCTTCTTCCAGGATTAAACCCTTCAGCCATT
TTTGCTACTCATTAGATTTGCTTCTCAAAGTATTACTAATCTTTCCTATT
AAAGAGTATCAACTTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012852XLOC_012852Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022870-exon-sc0000435-1575043694:158918..160437TCONS_00022870-exon-sc0000435-1575043694:158918..160437Clytia hemisphaericaexon
TCONS_00022870-exon-sc0000435-1510915933:158918..160437TCONS_00022870-exon-sc0000435-1510915933:158918..160437Clytia hemisphaericaexon
TCONS_00022870-exon-sc0000435-1491911889:158918..160437TCONS_00022870-exon-sc0000435-1491911889:158918..160437Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000435supercontigsc0000435:158918..160437 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0288381	0.104376	0.260574	0.0684128	0.0282468	0	0	0.0179978	0	0	0.0332128	7.60229	7.61908	0	0.0301027	13.4929	9.95649	7.52709	9.39444	9.28125	13.3505	0	0	0	0
Blast
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BLAST of TCONS_00022870 vs. Swiss-Prot (Human)
Match: SPRE (Sepiapterin reductase OS=Homo sapiens GN=SPR PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.239e-17
Identity = 62/265 (23.40%), Postives = 123/265 (46.42%), Query Frame = -3 
Query:  550 GKFLCLITGAGNGLGRAIAGMAFQDQGILPNALSGSKVILIDKDEDALKETSGKKMRQFLKHRKIEVELEVFDLSDVYDMKSLAEKI-EDHQERDYEQVIFVNNASDVGDTSKTLDDYQDPDVLSKYWNLNITSRTYLSCQFARIFKAS---KRTFLHTIRMDSTSPETHFGPSCMATSAVKAFTETLAMENPKLRVLEYHVGLMETNRTLKIVDQCGNEKVQKSAQKAQEENKLEQPLEVAKRIIKYIEGNDYTEGKVLKIIDE 1332
            G+ +CL+TGA  G GR +A +             GS ++L  ++++AL++   +   +    R + V     DL     ++ L   + E  + +  ++++ +NNA  +GD SK   D  D   ++ YW LN+TS   L+    + F  S    RT ++   + +  P   +   C   +A     + LA+E P +RVL Y  G ++T+      +   +  ++K  Q+ + + KL      A++++  +E +++  G  +   D+
Sbjct:    6 GRAVCLLTGASRGFGRTLAPLLAS------LLSPGSVLVLSARNDEALRQLEAELGAERSGLRVVRVP---ADLGAEAGLQQLLGALRELPRPKGLQRLLLINNAGSLGDVSKGFVDLSDSTQVNNYWALNLTSMLCLTSSVLKAFPDSPGLNRTVVNISSLCALQPFKGWALYCAGKAARDMLFQVLALEEPNVRVLNYAPGPLDTDMQQLARETSVDPDMRKGLQELKAKGKLVDCKVSAQKLLSLLEKDEFKSGAHVDFYDK 261
The following BLAST results are available for this feature:
BLAST of TCONS_00022870 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPRE4.239e-1723.40Sepiapterin reductase OS=Homo sapiens GN=SPR PE=1 ... [more]
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