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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022853 ID=TCONS_00022853|Name=TCONS_00022853|organism=Clytia hemisphaerica|type=transcript|length=1993bpRun BLAST on NCBI protein sequence of TCONS_00022853-protein >TCONS_00022853-protein ID=TCONS_00022853-protein|Name=TCONS_00022853-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp LSVNNQKATKNKMNFSECFKQTGQLCKFSPNQKALANAAQYRLVIRDVKSRun BLAST on NCBI transcript from alignment at sc0000435:248814..256771+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022853 ID=TCONS_00022853|Name=TCONS_00022853|organism=Clytia hemisphaerica|type=transcript|length=7958bp|location=Sequence derived from alignment at sc0000435:248814..256771+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000435:248814..256771+ >TCONS_00022853 ID=TCONS_00022853|Name=TCONS_00022853|organism=Clytia hemisphaerica|type=CDS|length=19152bp|location=Sequence derived from alignment at sc0000435:248814..256771+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022853 vs. Swiss-Prot (Human)
Match: WRP73 (WD repeat-containing protein WRAP73 OS=Homo sapiens GN=WRAP73 PE=1 SV=1) HSP 1 Score: 545.428 bits (1404), Expect = 0.000e+0 Identity = 245/443 (55.30%), Postives = 335/443 (75.62%), Query Frame = 1
Query: 37 MNFSECFKQTGQLCKFSPNQKALANAAQYRLVIRDVKSLQIKALFTCLDNINHIEWSADSMFLLCAMYKRGIIQVWSLENTEWTCKIDHGSLGLVYARWSPDSRHILSTSDFKLRITVWSLINKAVSYIKFPKHSQKGLEFSKNGKYMAVAERRNHKDFISVFACDTWEMLKHFATDTKDLSDISFSPNGNMIAAWDSKLEYKVVIYSLDGRFISSYSAYDYALGVKSVTWSPTNQFLAVGSYDQQVRLLNNVTWKSICEFQHPPKITNSHTTIYLEIEKKNVL-------LPWETEPGTSRSQPSHYTVQDKPYQLPSIRPDSEKPNPKLGVGSVSFSYNSLYMATKNDNMPNVLWIWELRSLKLVSLLVQCHAIKAFSWDSKEIRLALCAGTNKLYMWSLAGCLAVEVPGEGDIAVTSLTWHESGDSILLASKDQMCMCFL 1344
MNFSE FK + LCKFSP+ K LA+ QYRLV+RDV +LQI L+TCLD I HIEWSADS+F+LCAMYKRG++QVWSLE EW CKID GS GLV + WSPD RHIL+T++F LRITVWSL K+VSYIK+PK +G+ F+++G+YMA+AERR+ KD++S+F C W++L+HF TDT+DL+ I ++PNG ++A WD+ LEYK+++YSLDGR +S+YSAY+++LG+KSV WSP++QFLAVGSYD +VR+LN+VTWK I EF HP I + +Y E EK L P G S S Y + P L +++P +++ NPK+G+G ++FS +S ++AT+NDN+PN +W+W+++ L+L ++L Q ++AF WD ++ RLA+C G ++LY+WS AGC++V+VPGEGD AV SL WH SGDS+ L SKD C+CFL
Sbjct: 1 MNFSEVFKLSSLLCKFSPDGKYLASCVQYRLVVRDVNTLQILQLYTCLDQIQHIEWSADSLFILCAMYKRGLVQVWSLEQPEWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWSLCTKSVSYIKYPKACLQGITFTRDGRYMALAERRDCKDYVSIFVCSDWQLLRHFDTDTQDLTGIEWAPNGCVLAVWDTCLEYKILLYSLDGRLLSTYSAYEWSLGIKSVAWSPSSQFLAVGSYDGKVRILNHVTWKMITEFGHPAAINDPKIVVYKEAEKSPQLGLGCLSFPPPRAGAGPLPSSESKYEIASVPVSLQTLKPVTDRANPKIGIGMLAFSPDSYFLATRNDNIPNAVWVWDIQKLRLFAVLEQLSPVRAFQWDPQQPRLAICTGGSRLYLWSPAGCMSVQVPGEGDFAVLSLCWHLSGDSMALLSKDHFCLCFL 443 The following BLAST results are available for this feature:
BLAST of TCONS_00022853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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