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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022852 ID=TCONS_00022852|Name=TCONS_00022852|organism=Clytia hemisphaerica|type=transcript|length=1851bp
tCAAAAATTTCACCAAAAGAGTATGTCTAATAATTAAAACTATAGCATAT
AATTTTGACAAACATTATGTAAAATTTCTCATTGCTAAGAACACTTAGAA
ATTGTATTCTTAggtaaagatgaagattttgatAAAAGGGTCATTTAGTC
ATAAAGGGAGGGGTAGAGACAATATGCTTTATTgcatttagaaaaataaa
acaataatccCCATttctaaaaatggaaaaaaagaattcaaaatttgtta
ggtgtatcaaaaattttggacatGATAAAGTCCAAAACAAGTGAAGCCTT
ATCagattaaaaattttgaaaactataaGGTACTAAgatttgaatataaa
aaaaaaattattatttataaTAAACCCTAAAAAATTAGAACAAGAACTAA
ATTGGATAAAGGCATAATTGACATCTTCTTTAGATGGTTATGAAAATTAT
CTTTTATTATATATGGTGATCTGAACCAGGCCTGGCCGATCTAGGCCGAT
TTGGGCCGTAGAATTACTTGGCCAATCCTGGCTGATCCATGAAtgtgctc
taaatcgcttgcagGAACACATATATATTTATTatcattccaaaaaaaat
tcaattttcaaaaatacggaaggttataataaaataaaatcctatgAAAG
ATCATTTGCAAGTACTGTTTCTTCCCAAAATTGTGTTACACCAAACATTT
TACAcaatttttcaacttcaacctTCAGCTCATCAGTAATAGGTGTCAag
ccttttttcaatttttccttgTCTACATCTCTTGAAGAAAATGGTGTTCC
AGTTTGTGAATCTTTCGAAGAAATTGTTTCAATATCCGGAAGCTGGTCCA
AAGGAATCCCTATGTGATCAAAAACTTTACTTAAAACTACATTTGGATTT
TTTATCATGTGCTCAAACTTGAACGACTTCAACTCTAAACCATGCTCTTC
ATTCAGTTTTTTAAAAGCAGCAGTACTTGCAACCCAAATTATTGCCCACT
ttgtaaaagaagaaaattgagcTATATCTTCAGGCTTGATGGAATCAGTG
AAGTTTTTTAACAACCTATGTTGACCAACACCACCCCAATAGCAGGCTAG
CTCAGTTGACAATGGATCCCAGTTATTTGCAACCATCAATTTTTCATATG
ACTGGACAAATCCTAGACCTTGGCGATACATATAAACCTGTTTAATAGAA
GGAAAGACATCAACCATCATCTCAGTAATGAAAAGAACGGAACTTTGATG
TTTCATCAACATGCAGCTTGAATTTCGCGCACTTGCATGTTTAATGGTCA
TCAAAATAGCTGAATACATCATCTTCTTGATTTTCTCATAATCTTGATTG
CCATTGTAAAAAGACATTTCTGCCAGTTGGGTAAAGCCATTGGTTTCAGA
TAATGAAAGTGCATTCGGTATTCCTTCAAACACTTTTGTAAATAAAGTAG
AGCCACACCGACCATGGTTTGCCAAATGCACTATTGGTATATTTGGTATG
GTAACTTGTTTTGCGACAGTATGAAATGATTCTAAAGGCATGGTCACCAT
TTTGACAGCATTTTTGTACTGGGTATCATAAACAAATGCTTTGGTTTTAT
CAAAGATATCACAATCACCACAATCAACAAGAATGGCTTCATCATCTGTG
AAAGTGTACAGAGAataattttcagccaaaacaaTATTTGGGTGAGCAAA
TTCTGTAAATTCAGTAGTAAAGTCAGTTTTGCGTGAAAATTCATAATCAC
GTTCTACTTTATATCTACCAAGTATTTGATAAACTGATGCACTATTCTCA
TAAGTTTTTGGGGGCTTCATTTTGATTATTGACAAACTCAAGGAATATTT
A Run BLAST on NCBI transcript from alignment at sc0000435:141125..142975+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022852 ID=TCONS_00022852|Name=TCONS_00022852|organism=Clytia hemisphaerica|type=transcript|length=1851bp|location=Sequence derived from alignment at sc0000435:141125..142975+ (Clytia hemisphaerica)
tCAAAAATTTCACCAAAAGAGTATGTCTAATAATTAAAACTATAGCATAT
AATTTTGACAAACATTATGTAAAATTTCTCATTGCTAAGAACACTTAGAA
ATTGTATTCTTAggtaaagatgaagattttgatAAAAGGGTCATTTAGTC
ATAAAGGGAGGGGTAGAGACAATATGCTTTATTgcatttagaaaaataaa
acaataatccCCATttctaaaaatggaaaaaaagaattcaaaatttgtta
ggtgtatcaaaaattttggacatGATAAAGTCCAAAACAAGTGAAGCCTT
ATCagattaaaaattttgaaaactataaGGTACTAAgatttgaatataaa
aaaaaaattattatttataaTAAACCCTAAAAAATTAGAACAAGAACTAA
ATTGGATAAAGGCATAATTGACATCTTCTTTAGATGGTTATGAAAATTAT
CTTTTATTATATATGGTGATCTGAACCAGGCCTGGCCGATCTAGGCCGAT
TTGGGCCGTAGAATTACTTGGCCAATCCTGGCTGATCCATGAAtgtgctc
taaatcgcttgcagGAACACATATATATTTATTatcattccaaaaaaaat
tcaattttcaaaaatacggaaggttataataaaataaaatcctatgAAAG
ATCATTTGCAAGTACTGTTTCTTCCCAAAATTGTGTTACACCAAACATTT
TACAcaatttttcaacttcaacctTCAGCTCATCAGTAATAGGTGTCAag
ccttttttcaatttttccttgTCTACATCTCTTGAAGAAAATGGTGTTCC
AGTTTGTGAATCTTTCGAAGAAATTGTTTCAATATCCGGAAGCTGGTCCA
AAGGAATCCCTATGTGATCAAAAACTTTACTTAAAACTACATTTGGATTT
TTTATCATGTGCTCAAACTTGAACGACTTCAACTCTAAACCATGCTCTTC
ATTCAGTTTTTTAAAAGCAGCAGTACTTGCAACCCAAATTATTGCCCACT
ttgtaaaagaagaaaattgagcTATATCTTCAGGCTTGATGGAATCAGTG
AAGTTTTTTAACAACCTATGTTGACCAACACCACCCCAATAGCAGGCTAG
CTCAGTTGACAATGGATCCCAGTTATTTGCAACCATCAATTTTTCATATG
ACTGGACAAATCCTAGACCTTGGCGATACATATAAACCTGTTTAATAGAA
GGAAAGACATCAACCATCATCTCAGTAATGAAAAGAACGGAACTTTGATG
TTTCATCAACATGCAGCTTGAATTTCGCGCACTTGCATGTTTAATGGTCA
TCAAAATAGCTGAATACATCATCTTCTTGATTTTCTCATAATCTTGATTG
CCATTGTAAAAAGACATTTCTGCCAGTTGGGTAAAGCCATTGGTTTCAGA
TAATGAAAGTGCATTCGGTATTCCTTCAAACACTTTTGTAAATAAAGTAG
AGCCACACCGACCATGGTTTGCCAAATGCACTATTGGTATATTTGGTATG
GTAACTTGTTTTGCGACAGTATGAAATGATTCTAAAGGCATGGTCACCAT
TTTGACAGCATTTTTGTACTGGGTATCATAAACAAATGCTTTGGTTTTAT
CAAAGATATCACAATCACCACAATCAACAAGAATGGCTTCATCATCTGTG
AAAGTGTACAGAGAataattttcagccaaaacaaTATTTGGGTGAGCAAA
TTCTGTAAATTCAGTAGTAAAGTCAGTTTTGCGTGAAAATTCATAATCAC
GTTCTACTTTATATCTACCAAGTATTTGATAAACTGATGCACTATTCTCA
TAAGTTTTTGGGGGCTTCATTTTGATTATTGACAAACTCAAGGAATATTT
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022852-exon-sc0000435-1491911889:141125..142975 | TCONS_00022852-exon-sc0000435-1491911889:141125..142975 | Clytia hemisphaerica | exon |
| TCONS_00022852-exon-sc0000435-1510915933:141125..142975 | TCONS_00022852-exon-sc0000435-1510915933:141125..142975 | Clytia hemisphaerica | exon |
| TCONS_00022852-exon-sc0000435-1575043694:141125..142975 | TCONS_00022852-exon-sc0000435-1575043694:141125..142975 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000435 | supercontig | sc0000435:141125..142975 + |
Blast
The following BLAST results are available for this feature:
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