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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022850 ID=TCONS_00022850|Name=TCONS_00022850|organism=Clytia hemisphaerica|type=transcript|length=1684bp
CAGGCTGTATTCTATTTATTTCGCACAGTTAGATTTCAGAAGCAGCCCCC
ACTTACAATTTGGTAAGtttagtaaaataaaaatacatcaaaagaaTGGT
ATTCAATTTCTAACAATTAAGAACTGTGATACAACAAAAAACTGTAGTaa
caataattaaatcaaaatgGTTTAAAAGGCAAAATTTGATCAAGaaacat
caaataaaatttaaaggcataaaagaaaaaataaatttgattataAAAGA
AATCCACTTTGATTTTTGGATAAAAAGGTTCTCTCAGATGCATTTTCCAA
CATATTTGGTGATATACTACATTCCACAAGATTTGAGATCCAATCAGAGA
AAACGCTACTCTTGATGATGCAATAATTCAAGCAATACCTAATAGTTCTT
TGACTGATGAAGGGAGATTTAACTTTCGCAAATAAACCAATGGGTAAAAT
GAAAGAACAGCTCGCCTTGCCAATGTTGTTAATTTAAGTTGTTTCTTTTT
ATCTTCatagaaaaagaaagcaaacaCATCATTCTTCACTGAAAAACCAT
CAGCacaacaaaaaaagatttcttcacCAGACCAGTTGACAATAATTTTC
TGTTCTTCAATTAACTCAAATTCAATATCTATTTTAAATGTTTGCAAAAT
TGTTTTCTTGAACGGACAAAGTACACACAGTTCAACACCTGTTGAAACGT
AAACTCTCACTTTTGTGAAATAATGAACCATAATTGTGTCATCAAAGACC
ACAATCCCAAAATCCTTTACAAAATCTAATACTGTGATTGGTTCTATTGC
AGAATCGTCACTTAGATTGTAACATAAAAGTAGATTTGACTTGTCGTAGA
TATAAACCAAATCCAGATTTGGAGTGCAAATAAGAAATGATTCATCAAAG
CACGAGCTAGGTGTACAAGGGATTCTCCTTAAATTCTGCTTGTTGATATC
AAAcacaaaaattgtattttggtTGGACAATACTGTGACCATATAAAGAT
CTTCTCTTGAATTAAAAGTAGAGTAAAACCTACACTTACCCCAACCATCA
TTAACATATTCATGTGAAAACTTACACAGATATTTACACTCTCCTTTATC
attgaatttgaatattttgcaTTCGAAATGTTTGTTGGCAATGAAATATA
TAAGGGCAACCAAATTATTGTTGGGTgaaatttgaacattttcaatATCC
CTGTGTTGTCCAGCAAATATGTCATTTAAACTGACTTCATTGGTTTCCTT
ATCATTGTTAAATACTTTAAGCATAGTTTTATAACCAAAGCGGGAAGGgc
tttcatcatcatcatcaggtCCATAATATGCACGCTTATTTGTTTTCTGT
TGTACAAAACTAACTACTAGTTTTCTATCATTGGATATTGCACGGGGAAA
TAATATCTCCTCTTCGTCAAAAAGACCAGTCaaagcaagtgaatcaatca
aatcAGTGTCGAAGGAAATCGAACAAAAACCTCcttcttttatcttttta
taaatCACAATTTTCCCATCAGAACATACCAAATCTTTCCTAAAATCAAG
TTTGAACTGTTTGATTGGTTGCTTTGATTCCAAATTAATCTGGTCCCAAG
GTATGATATATTTTCGttctttgtttatattttcttcacttgcaaattca
ataaatatcaccattttcagttttttgtctaaaa Run BLAST on NCBI transcript from alignment at sc0000435:135972..140080+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022850 ID=TCONS_00022850|Name=TCONS_00022850|organism=Clytia hemisphaerica|type=transcript|length=4109bp|location=Sequence derived from alignment at sc0000435:135972..140080+ (Clytia hemisphaerica)
CAGGCTGTATTCTATTTATTTCGCACAGTTAGATTTCAGAAGCAGCCCCC
ACTTACAATTTGGTAAGtttagtaaaataaaaatacatcaaaagaaTGGT
ATTCAATTTCTAACAATTAAGAACTGTGATACAACAAAAAACTGTAGTaa
caataattaaatcaaaatgGTTTAAAAGGCAAAATTTGATCAAGaaacat
caaataaaatttaaaggcataaaagaaaaaataaatttgattataAAAGA
AATCCACTTTGATTTTTGGATAAAAAGGTTCTCTCAGATGCATTTTCCAA
CATATTTGGTGATATACTACATTCCACAAGATTTGAGATCCAATCAGAGA
AAACGCTACTCTTGATGATGCAATAATTCAAGCAATACCTAATAGTTCTT
TGACTGATGAAGGGAGATTTAACTTTCGCAAATAAACCAATGGGTAAAAT
GAAAGAACAGCTCGCCTTGCCAATGTTGTTAATTTAAGTTGTTTCTTTTT
ATCTTCatagaaaaagaaagcaaacaCATCATTCTTCACTGAAAAACCAT
CAGCacaacaaaaaaagatttcttcacCAGACCAGTTGACAATAATTTTC
TGTTCTTCAATTAACTCAAATTCAATATCTATTTTAAATGTTTGCAAAAT
TGTTTTCTTGAACGGACAAAGTACACACAGTTCAACACCTGTTGAAACGT
AAACTCTCACTTTTGTGAAATAATGAACCATAATTGTGTCATCAAAGACC
ACAATCCCAAAATCCTTTACAAAATCTAATACTGTGATTGGTTCTATTGC
AGAATCGTCACTTAGGTTATAGCATAAAAGTAGATTTGACTTGTCGTAGA
TATAAACCAAATCCTGATTTGGAGTACAAATAAGAAATGATTGATCAAAA
CTGGAGTCATGCACCTCTGGGACTTCAATCAAATTCTGTTTGATGATATC
ATAAACGAAGATTCCACTTGATTCATAATTCATAATTCTTATCATATAAA
GGTCTTCTCTTGAATTGAACATAGTATCAAATGCAACAGCTATGCCAAAC
GAAGAAATCATGTCATACTCGTATGAAAACTTGTACAAGTATTTGCACCA
TCCTTCATCGGTAAATTTGAACATTTTACATTCGAAACTACTATCATCAG
TCAAATAGATGACAGCTACAAAATTATTATTTGGTGATATTTTAACATGT
TTTACATCCAAGCGTTCTCCATCAAAAAGATCGTTTTTACAGACACCTTT
CTTGTCCCTGTTGAACacttttaacattgttttataaATGAATTGAAAAC
ACTGCCTTTGATCTTGAGCTCCATGACTTTGTAAATTAGTTCTTTGCGTA
TATCGCTCTTGAAATATGCCGACCGCCAATTTTCCATCATTTGATATAGC
ACGTGGAGATGAAACTTGATTATCAAATGGGTTAACCAAAGTAAGTGAAT
CAAAAGAATCAGTGTTAAAAGGTGCAAACTCAAAATCTCCTTTGTCACTC
CTCTTATCAAATATTACAATCTTTCCCTCTGAACAGACCATATCTTTATC
ATCATCAAGTTTAAATGCTTTAATTGGTTTGTTTGATTCAAGATTAATCT
GGTGCCATGGGATGATATACTGTTTCTTTCGGTTTATGTTTTCTTGATTA
GTAAATTCAACATATATCCCCATAATATTTTTGTCTAAAAACGAAGAAca
taaaagtaagaaaatattaAGACAAGCTTTATCTTAATAGTAACGTAgag
taaagaagaaaaaattattttgatttgtcaaaaattatttccaataaata
attttgattgttgGTTTCATAGGCCATTTCAAGGTCGAAAAGAACCATAA
GTAAGTTAATAAGTAAATCTAcaaccgcagtcggaggcgacccaaaggct
cctcttttgatagctatctaccctaaaggtaggggagggtgccactcttt
ctccatGAGttactccacttacccttgatccttcacTTAATTGCTGAGCT
GATCCTTcacttaattgctgagcatcaagcagagaggcatcaagtgccat
tttgggaatctttggtatgatccggctagaggttgaacccacaaccttgc
gcatcgtagctggatgctctaccacgGGACTACAGTCAGAATCCTAGGTA
ATCAGGACCACCACGCTCTATATAAGGACTCTCTGTTGATCTAAAGTTTC
GATGTTTTTCTGTAAAGCCAACGGGAAGCCATAATGGGGGAGCAATCAGT
CCttattacccatgattcatttcgactgcgAAATGGCCTATAGACATAAT
ACAATTTGAATCATGTTGTGCTGAATAAAATAAACATCATTCCCGTCAAG
TCTTGTATGTTCTTTATTTTGGcatatttttaatattatttgACTTTTGT
ACAGCTCAGAAGTTATTGTGTATTCTTTTAGTATTTCTGATTAAAAGTAT
ACATAAACAAGACAAAAAAGATGACAGCTTTGACTCAATTTTGATAGTTT
TTAGCATATTCTATATTTAAATATTAGTATGTTTAACTTGAACCAATGAC
ACATAGAGGATGagaaagtaaaatttttatATTGCAGGTTTTCTAAAATA
AAAGGCACGAAAAAATGATTGAGAATAAGGTATCCTTCAGAAATCCTTTT
GCCTGCTAAACAGATGAACACaatctttcaaaacaagaaCCGCTTTGAGT
TTATTTCttacaaattatatttaaagcTGAACATTGGATAAGTCATCACA
ACCACAAAATTGACAAACAATTTTCAAGTAagtgaaaaaatttaataaCC
ATTCACCCAACACCTAATAGTGCTTTGATTGAGAAAGGCAGATTAAATTT
TTGTATATGAGCTAACGGGTAAGTTGTATGCACAGCTCGCCTTGCTAGTT
TTTTCAATTCcaggtgtttctttttatcttcACAGAAAAAGAATACAAAC
ACAACATGCTCCACTGATTCAGTATCCGCAatacaaaaaaagatttcttc
acCAGACCAGTTCAGAACAATTTTCTGTTCTTCAATACATTCCAAttcaa
aatctattttaaatatttgcaaaatcgTCTTCTTGAAAGGACAAAGTACA
CACAGTTCAACACCTGTTGACACGTAAACTCTCACCTTTGTGAAATAATG
AACCATAATTGTGTCATCAAAGACCACAATCCCAAAATCCTTTACAAAAT
CTAATACTGTGATTGGTTCTATTGCGGAATTGTCACTTAGATTGTAACAT
AAAAGTAGATTTGACTTGTCGTAGATATAAACCAAATCCAGATTTGGAGT
GCAAATAAGAAATGATTCATCAAAGCACGAGCTAGGTGTACAAGGGATTC
TCCTTAAATTCTGCTTGTTGATATCAAAcacaaaaattgtattttggtTG
GACAATACTGTGACCATATAAAGATCTTCTCTTGAATTAAAAGTAGAGTA
AAACCTACACTTACCCCAACCATCATTAACATATTCATGTGAAAACTTAC
ACAGATATTTACACTCTCCTTTATCattgaatttgaatattttgcaTTCG
AAATGTTTGTTGGCAATGAAATATATAAGGGCAACCAAATTATTGTTGGG
TgaaatttgaacattttcaatATCCCTGTGTTGTCCAGCAAATATGTCAT
TTAAACTGACTTCATTGGTTTCCTTATCATTGTTAAATACTTTAAGCATA
GTTTTATAACCAAAGCGGGAAGGgctttcatcatcatcatcaggtCCATA
ATATGCACGCTTATTTGTTTTCTGTTGTACAAAACTAACTACTAGTTTTC
TATCATTGGATATTGCACGGGGAAATAATATCTCCTCTTCGTCAAAAAGA
CCAGTCaaagcaagtgaatcaatcaaatcAGTGTCGAAGGAAATCGAACA
AAAACCTCcttcttttatctttttataaatCACAATTTTCCCATCAGAAC
ATACCAAATCTTTCCTAAAATCAAGTTTGAACTGTTTGATTGGTTGCTTT
GATTCCAAATTAATCTGGTCCCAAGGTATGATATATTTTCGttctttgtt
tatattttcttcacttgcaaattcaataaatatcaccattttcagttttt
tgtctaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022850-exon-sc0000435-1491911889:135972..136786 | TCONS_00022850-exon-sc0000435-1491911889:135972..136786 | Clytia hemisphaerica | exon |
| TCONS_00022850-exon-sc0000435-1510915933:135972..136786 | TCONS_00022850-exon-sc0000435-1510915933:135972..136786 | Clytia hemisphaerica | exon |
| TCONS_00022850-exon-sc0000435-1575043694:135972..136786 | TCONS_00022850-exon-sc0000435-1575043694:135972..136786 | Clytia hemisphaerica | exon |
| TCONS_00022850-exon-sc0000435-1491911889:139212..140080 | TCONS_00022850-exon-sc0000435-1491911889:139212..140080 | Clytia hemisphaerica | exon |
| TCONS_00022850-exon-sc0000435-1510915933:139212..140080 | TCONS_00022850-exon-sc0000435-1510915933:139212..140080 | Clytia hemisphaerica | exon |
| TCONS_00022850-exon-sc0000435-1575043694:139212..140080 | TCONS_00022850-exon-sc0000435-1575043694:139212..140080 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000435 | supercontig | sc0000435:135972..140080 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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