TCONS_00022846 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022846
Unique NameTCONS_00022846
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length981

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022846 ID=TCONS_00022846|Name=TCONS_00022846|organism=Clytia hemisphaerica|type=transcript|length=981bp
GCTCCTTTGGAGATTTTGGCAAGAAGGAGAAAACCATCGTTGAGAACGAA
TTGTGAATTAAAAAGTTTGCGTGTACCAATCGAAAGAAATGGATGTAGAA
GTAAATCATATGTTGAAGTGAAGTATTGTGATGGCAATTGTTATTCGATG
ACATCCTACACTCCCGAATATCCTTACTACAAGTCACATTGTCATTGCTG
TAAAGCATACAAAGAAAGAGCAAGGAAAATCGAACTGGAATGTCCACCGG
ACGCGAACGGTGTAATAAAGACTGTACCGCATTATGTACCGGACATACTC
GAATGTAAATGCAAGAAATGTGAGGGTCATAAATAAAACATGTGCAGTGA
CTGATTATAAAGTTTATATGTTGTTAGTCGTTGTCAAATTATGATCGTTA
AGAGGCGGTGGAGTGAATCAAGATGAACAGATCTTCTGAATGGTTTGGCC
CTCACAGAAAATATGTAACATACGATTTGTTAGATGTGTTATACAAAGTA
TCATTTCTGTAATTCAACTCTGACGAGACATTAGAGTTTTGATAAAACAA
CGTAACATGATTATTACTCATATAGCAGCTTTAAGACCAATTACCCCAAA
AATTGCATAACGTATGACTTGGTGCATGAAAAAAGACGAGAAACCACGGC
TAACTTAATTACCGAACTAAAGGACCTCATAATGAAGAAGGAAGTCACTA
ATCCgtgaagcaaaaaaaatgtttgaggAATGGACATAATTAGTCATTAT
TGCTGAATAATTAGTACAAGATTatcataaaattttaactaaaGTTTAAA
AATTGGGCATGATGATATATACGTAGGTATTTTATTATTAAttatctaaa
aatgaaaagaagtATGCAAATTTCCATTATGTTATGTTTTACATAGATAA
TTAACCTGAAACAAagatgtaatttaattgaaattgtTTTCAAGAAACTA
TCCagataatatattttgaaaataacataAC
Run BLAST on NCBI

protein sequence of TCONS_00022846-protein

>TCONS_00022846-protein ID=TCONS_00022846-protein|Name=TCONS_00022846-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
APLEILARRRKPSLRTNCELKSLRVPIERNGCRSKSYVEVKYCDGNCYSM
TSYTPEYPYYKSHCHCCKAYKERARKIELECPPDANGVIKTVPHYVPDIL
ECKCKKCEGHK
Run BLAST on NCBI

transcript from alignment at sc0000435:95649..97768+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022846 ID=TCONS_00022846|Name=TCONS_00022846|organism=Clytia hemisphaerica|type=transcript|length=2120bp|location=Sequence derived from alignment at sc0000435:95649..97768+ (Clytia hemisphaerica)
GCTCCTTTGGAGATTTTGGCAAGAAGGAGAAAACCATCGTTGAGAACGAA
TTGTGAATTAAAAAGTTTGCGTGTACCAATCGAAAGAAATGGATGTAGAA
GTAAATCATGTaagttaattttgaaaatttgttcatttttgtaaaGCTAC
TTTATAAATTGGTTTAGAACTACCATGTCCATTGATTTACTGCAAGAGCC
AACATCCCTTTTTCGAACAGCCTGCCACAAAAAGGTCTCTGAAAGCTGTT
GTGATTAATTATGCGCTGTTCGAAGCTGATAAGATATTTTATGGTATATA
TTGTCCGAACTATTCAATGGAAATAAAAATCCAGCTCAAGTTCGAGCGTG
AATCTGTGTGTATCCTCATATGTACGCTCAATTTACGCATCTACGAAAAA
CCTAAAATATGTCTAAAGGACCTTGAGGAGACAAAACTTAAGTATGCAAT
CAAGTATCCTTATTTGTCCAATCTTGTAaaatgaacgaaaaaaaaattgg
cattaTATCAACATAAGAATCATGTAACAGATCAGTTGGGATATAGCGTA
ATTCTTATTTTCGGTTAATACTTTTATGAATGAGACACAAAATAGTGAGG
CTAACCAAATCTTGTATTCCCGTTACTTCATACCACAAACATGACTTTCA
TGTCACTCAATTTCCGATTCGAATACGACATGTTTACAGGGTAGAGACAA
GTCGATGCAATGTTTTGTTCGAGAAAccactttttgcaaaaaaacatgAT
TTGCTGTCCAAGATAAGCATTAAAGATGACATAATGTCGTAAAAAAGCTT
TCAACTTTTGATGTTAATGACAGAAAACTCttgacaaaaaatatatattg
ccGGTTGCAAAGATAGTTGTTTACTACTTGTTTACTACTGCGCTTTATTT
ACAACAAACAAAAAGAACTCTGTATCTCAAAAAGGGATTATTTATCTCGG
CCCTGTGTTTTCTACTCTAAACATGGTTAGATCCCCCAAAATTGCTCTGC
TTTGTCAAATAATCACAACAGGTACAACTTTGAGCAAAGGGACAATTTTA
TACGCTTAGTGTCAGACACAATTCTGAGCATAGTTATGCTTTTAAGTGAT
TTCCTTatgcaaaatataaaaagaCTAACAGTGACCTTGATAAACTtcta
aaagatttttcttttttacattcTTACAGATGTTGAAGTGAAGTATTGTG
ATGGCAATTGTTATTCGATGACATCCTACACTCCCGAATATCCTTACTAC
AAGTCACATTGTCATTGCTGTAAAGCATACAAAGAAAGAGCAAAGAAAAT
CGAACTGGAATGTCCACCGGACGCGAATGGTGTAATAAAAACTNCATACA
AAGAAAGAGCAAGGAAAATCGAACTGGAATGTCCACCGGACGCGAACGGT
GTAATAAAGACTGTACCGCATTATGTACCGGACATACTCGAATGTAAATG
CAAGAAATGTGAGGGTCATAAATAAAACATGTGCAGTGACTGATTATAAA
GTTTATATGTTGTTAGTCGTTGTCAAATTATGATCGTTAAGAGGCGGTGG
AGTGAATCAAGATGAACAGATCTTCTGAATGGTTTGGCCCTCACAGAAAA
TATGTAACATACGATTTGTTAGATGTGTTATACAAAGTATCATTTCTGTA
ATTCAACTCTGACGAGACATTAGAGTTTTGATAAAACAACGTAACATGAT
TATTACTCATATAGCAGCTTTAAGACCAATTACCCCAAAAATTGCATAAC
GTATGACTTGGTGCATGAAAAAAGACGAGAAACCACGGCTAACTTAATTA
CCGAACTAAAGGACCTCATAATGAAGAAGGAAGTCACTAATCCgtgaagc
aaaaaaaatgtttgaggAATGGACATAATTAGTCATTATTGCTGAATAAT
TAGTACAAGATTatcataaaattttaactaaaGTTTAAAAATTGGGCATG
ATGATATATACGTAGGTATTTTATTATTAAttatctaaaaatgaaaagaa
gtATGCAAATTTCCATTATGTTATGTTTTACATAGATAATTAACCTGAAA
CAAagatgtaatttaattgaaattgtTTTCAAGAAACTATCCagataata
tattttgaaaataacataAC

Coding sequence (CDS) from alignment at sc0000435:95649..97768+

>TCONS_00022846 ID=TCONS_00022846|Name=TCONS_00022846|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at sc0000435:95649..97768+ (Clytia hemisphaerica)
GCTCCTTTGGAGATTTTGGCAAGAAGGAGAAAACCATCGTTGAGAACGAA
TTGTGAATTAAAAAGTTTGCGTGTACCAATCGAAAGAAATGGATGTAGAA
GTAAATCATATGTTGAAGTGAAGTATTGTGATGGCAATTGTTATTCGATG
ACATCCTACACTCCCGAATATCCTTACTACAAGTCACATTGTCATTGCTG
TAAAGCATACAAAGAAAGAGCAAGGAAAATCGAACTGGAATGTCCACCGG
ACGCGAACGGTGTAATAAAGACTGTACCGCATTATGTACCGGACATACTC
GAATGTAAATGCAAGAAATGTGAGGGTCATAAATAAGCTCCTTTGGAGAT
TTTGGCAAGAAGGAGAAAACCATCGTTGAGAACGAATTGTGAATTAAAAA
GTTTGCGTGTACCAATCGAAAGAAATGGATGTAGAAGTAAATCATATGTT
GAAGTGAAGTATTGTGATGGCAATTGTTATTCGATGACATCCTACACTCC
CGAATATCCTTACTACAAGTCACATTGTCATTGCTGTAAAGCATACAAAG
AAAGAGCAAGGAAAATCGAACTGGAATGTCCACCGGACGCGAACGGTGTA
ATAAAGACTGTACCGCATTATGTACCGGACATACTCGAATGTAAATGCAA
GAAATGTGAGGGTCATAAATAAGCTCCTTTGGAGATTTTGGCAAGAAGGA
GAAAACCATCGTTGAGAACGAATTGTGAATTAAAAAGTTTGCGTGTACCA
ATCGAAAGAAATGGATGTAGAAGTAAATCATATGTTGAAGTGAAGTATTG
TGATGGCAATTGTTATTCGATGACATCCTACACTCCCGAATATCCTTACT
ACAAGTCACATTGTCATTGCTGTAAAGCATACAAAGAAAGAGCAAGGAAA
ATCGAACTGGAATGTCCACCGGACGCGAACGGTGTAATAAAGACTGTACC
GCATTATGTACCGGACATACTCGAATGTAAATGCAAGAAATGTGAGGGTC
ATAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012841XLOC_012841Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022846-proteinTCONS_00022846-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022846-exon-sc0000435-1491911889:95649..95757TCONS_00022846-exon-sc0000435-1491911889:95649..95757Clytia hemisphaericaexon
TCONS_00022846-exon-sc0000435-1510915933:95649..95757TCONS_00022846-exon-sc0000435-1510915933:95649..95757Clytia hemisphaericaexon
TCONS_00022846-exon-sc0000435-1575043694:95649..95757TCONS_00022846-exon-sc0000435-1575043694:95649..95757Clytia hemisphaericaexon
TCONS_00022846-exon-sc0000435-1491911889:96828..96924TCONS_00022846-exon-sc0000435-1491911889:96828..96924Clytia hemisphaericaexon
TCONS_00022846-exon-sc0000435-1510915933:96828..96924TCONS_00022846-exon-sc0000435-1510915933:96828..96924Clytia hemisphaericaexon
TCONS_00022846-exon-sc0000435-1575043694:96828..96924TCONS_00022846-exon-sc0000435-1575043694:96828..96924Clytia hemisphaericaexon
TCONS_00022846-exon-sc0000435-1491911889:96994..97768TCONS_00022846-exon-sc0000435-1491911889:96994..97768Clytia hemisphaericaexon
TCONS_00022846-exon-sc0000435-1510915933:96994..97768TCONS_00022846-exon-sc0000435-1510915933:96994..97768Clytia hemisphaericaexon
TCONS_00022846-exon-sc0000435-1575043694:96994..97768TCONS_00022846-exon-sc0000435-1575043694:96994..97768Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000435supercontigsc0000435:95649..97768 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0919113	0	0.0520333	0	1.69679	0	0	0	6.66547	7.24429	5.17179	4.62024	9.4541	8.14597	1.06247	3.53087	5.15872	4.82642	7.09322	16.0109	11.7564	6.89364	0.995408	2.33348	0	0	15.8306	9.52899	0.306043	0.207873
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006207Cys_knot_C
IPR029034Cystine-knot_cytokine
IPR006208Glyco_hormone_CN
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022846 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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