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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022845 ID=TCONS_00022845|Name=TCONS_00022845|organism=Clytia hemisphaerica|type=transcript|length=1123bp
ATACAAAGCAAACCAACAGGAAACATTGAAAACCTATGAAATATCGTTCT
CAAAAAAAGctatgaaATCACAATTCAAGGAGATGAAGTCGTCCTTCTTG
GTTTTGTGTCTCATCCAAAGTATCATGGTTACAGCCAACAATCGAGTCAG
TAAATTACAAAGTCTAAAGTGTAAGCATTTAGACTATTTTGATCGTCCAC
AAAAAATCGAATACATCGAACTCCATCAACTCTCATCCAAAAATCAATCT
ATTTTGGATTCCTTCCAATTGAATTATTGTAATACTTCACCAAGATGTTT
AGTACCATGTGAATTTGTGAGAAGAGGCCGTATCGCTGGTTCTGTACATG
ACGACTGCGCATGTCAACTCGATATCCCCTCTTCGGGGCCAATTTTATGC
AGAAGGGAAACAGATAAATGGAAAACAGCGTGCCTTAATAATACGCTTAA
CTTCTGTGCAGATAACACGAACGAATCAGAAAAGAGATTTGGTACAGGGG
TCAAATGTGGTAAACCGCATCCTATTTGCGAATTACCTTGTTGGCTTGTT
AGTTCTGAGAGTGGAGGCAAGCTTGTTGACAAGGACAAAGATTGTTATTG
CTACAATTCGGCAAGCATTACTGATCAGTCGCAAATATGGATCGTTTGTT
TCGCACTGGCTACCTTCTTGTTAAGGTTATTCTGAGGGGCAAGTATTTTG
GAAAGTACAAATGGAACTGACAAatacatccctgtgtcacagacctgatT
GGACCCCCGTCCTACTGTAAAATTAGTCCAGAATTTCGTCCCGATTGAAA
GATACCCTTAATATTCAATGTatgaaattcaatgtaaaaaattgcactct
aaaaccattCCTCGCTGGATTTTTTtagtttggaacaatagaacttATAT
CCCATTTGGATTTCGATAATGAATTTTGTACCCGCTCTGGGAAAAAATTT
CCATCGGAGCTGTGAGATAGACACCTCAAAACGAcaatttatgatatgca
ccactgcaaagAACGCACTGACCTTTTGTGTTTTTTCGGTGTTTTTTCTA
CAAGTAAATTACGCAAGTTTTCAACCATCAGCCGTAGTAATTGTGACGTA
ATATCTAATGTTAGAAGATATTG Run BLAST on NCBI protein sequence of TCONS_00022845-protein >TCONS_00022845-protein ID=TCONS_00022845-protein|Name=TCONS_00022845-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
YKANQQETLKTYEISFSKKAMKSQFKEMKSSFLVLCLIQSIMVTANNRVS
KLQSLKCKHLDYFDRPQKIEYIELHQLSSKNQSILDSFQLNYCNTSPRCL
VPCEFVRRGRIAGSVHDDCACQLDIPSSGPILCRRETDKWKTACLNNTLN
FCADNTNESEKRFGTGVKCGKPHPICELPCWLVSSESGGKLVDKDKDCYC
YNSASITDQSQIWIVCFALATFLLRLF Run BLAST on NCBI transcript from alignment at sc0000435:50131..51832+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022845 ID=TCONS_00022845|Name=TCONS_00022845|organism=Clytia hemisphaerica|type=transcript|length=1702bp|location=Sequence derived from alignment at sc0000435:50131..51832+ (Clytia hemisphaerica)
ATACAAAGCAAACCAACAGGAAACATTGAAAACCTATGAAATATCGTTCT
CAAAAAAAGGTAAGAatttattgaaaagttttgagattGGTAGTTTCGCC
AAAAGTAGAATTTAGATTGAAAGCATTACACCCGGATTTTATTTCACGGA
AAAATTATGTTCATTATATCCGAGTAGGTTAAGCTTTTCACCGGATGATG
GGTGGATCACAAACTTTCGGAAATCGAaacttttcgagttaaaaaCGAGA
GAACAGATTTCGAAAGTTTATAAAATATTCTTGGTCCCTTATCGGGATTA
TTTTTGGAAATAGTTtggaatttttcttatttttcgttCGAGatttgatt
ttatgatttttgcaaGCCTTAGCGAGATTTCCAAGGTCCGAAAAGGCATC
TTCATATTATCCCGTAAGAGTGGCACATAAGGTAGGTCCGCTTTCCCAGA
TTCTGCAATTTTAGCTAATTCATTTCTAGCTAACAGCGAGacatcaaaaa
cttttaatgaaatgaAGAAGCTTTACACAGCAAAAATATTTCCCGCTTTC
CGATCTAAATGGGGCTGTGATAGAATTTTAAGTGAAATGAACAATAACTT
TTCTATTTCGCGACTattttttcaacctttttttttagctatgaaATCAC
AATTCAAGGAGATGAAGTCGTCCTTCTTGGTTTTGTGTCTCATCCAAAGT
ATCATGGTTACAGCCAACAATCGAGTCAGTAAATTACAAAGTCTAAAGTG
TAAGCATTTAGACTATTTTGATCGTCCACAAAAAATCGAATACATCGAAC
TCCATCAACTCTCATCCAAAAATCAATCTATTTTGGATTCCTTCCAATTG
AATTATTGTAATACTTCACCAAGATGTTTAGTACCATGTGAATTTGTGAG
AAGAGGCCGTATCGCTGGTTCTGTACATGACGACTGCGCATGTCAACTCG
ATATCCCCTCTTCGGGGCCAATTTTATGCAGAAGGGAAACAGATAAATGG
AAAACAGCGTGCCTTAATAATACGCTTAACTTCTGTGCAGATAACACGAA
CGAATCAGAAAAGAGATTTGGTACAGGGGTCAAATGTGGTAAACCGCATC
CTATTTGCGAATTACCTTGTTGGCTTGTTAGTTCTGAGAGTGGAGGCAAG
CTTGTTGACAAGGACAAAGATTGTTATTGCTACAATTCGGCAAGCATTAC
TGATCAGTCGCAAATATGGATCGTTTGTTTCGCACTGGCTACCTTCTTGT
TAAGGTTATTCTGAGGGGCAAGTATTTTGGAAAGTACAAATGGAACTGAC
AAatacatccctgtgtcacagacctgatTGGACCCCCGTCCTACTGTAAA
ATTAGTCCAGAATTTCGTCCCGATTGAAAGATACCCTTAATATTCAATGT
atgaaattcaatgtaaaaaattgcactctaaaaccattCCTCGCTGGATT
TTTTtagtttggaacaatagaacttATATCCCATTTGGATTTCGATAATG
AATTTTGTACCCGCTCTGGGAAAAAATTTCCATCGGAGCTGTGAGATAGA
CACCTCAAAACGAcaatttatgatatgcaccactgcaaagAACGCACTGA
CCTTTTGTGTTTTTTCGGTGTTTTTTCTACAAGTAAATTACGCAAGTTTT
CAACCATCAGCCGTAGTAATTGTGACGTAATATCTAATGTTAGAAGATAT
TG Coding sequence (CDS) from alignment at sc0000435:50131..51832+ >TCONS_00022845 ID=TCONS_00022845|Name=TCONS_00022845|organism=Clytia hemisphaerica|type=CDS|length=1368bp|location=Sequence derived from alignment at sc0000435:50131..51832+ (Clytia hemisphaerica)
TACAAAGCAAACCAACAGGAAACATTGAAAACCTATGAAATATCGTTCTC
AAAAAAAGctatgaaATCACAATTCAAGGAGATGAAGTCGTCCTTCTTGG
TTTTGTGTCTCATCCAAAGTATCATGGTTACAGCCAACAATCGAGTCAGT
AAATTACAAAGTCTAAAGTGTAAGCATTTAGACTATTTTGATCGTCCACA
AAAAATCGAATACATCGAACTCCATCAACTCTCATCCAAAAATCAATCTA
TTTTGGATTCCTTCCAATTGAATTATTGTAATACTTCACCAAGATGTTTA
GTACCATGTGAATTTGTGAGAAGAGGCCGTATCGCTGGTTCTGTACATGA
CGACTGCGCATGTCAACTCGATATCCCCTCTTCGGGGCCAATTTTATGCA
GAAGGGAAACAGATAAATGGAAAACAGCGTGCCTTAATAATACGCTTAAC
TTCTGTGCAGATAACACGAACGAATCAGAAAAGAGATTTGGTACAGGGGT
CAAATGTGGTAAACCGCATCCTATTTGCGAATTACCTTGTTGGCTTGTTA
GTTCTGAGAGTGGAGGCAAGCTTGTTGACAAGGACAAAGATTGTTATTGC
TACAATTCGGCAAGCATTACTGATCAGTCGCAAATATGGATCGTTTGTTT
CGCACTGGCTACCTTCTTGTTAAGGTTATTCTGATACAAAGCAAACCAAC
AGGAAACATTGAAAACCTATGAAATATCGTTCTCAAAAAAAGctatgaaA
TCACAATTCAAGGAGATGAAGTCGTCCTTCTTGGTTTTGTGTCTCATCCA
AAGTATCATGGTTACAGCCAACAATCGAGTCAGTAAATTACAAAGTCTAA
AGTGTAAGCATTTAGACTATTTTGATCGTCCACAAAAAATCGAATACATC
GAACTCCATCAACTCTCATCCAAAAATCAATCTATTTTGGATTCCTTCCA
ATTGAATTATTGTAATACTTCACCAAGATGTTTAGTACCATGTGAATTTG
TGAGAAGAGGCCGTATCGCTGGTTCTGTACATGACGACTGCGCATGTCAA
CTCGATATCCCCTCTTCGGGGCCAATTTTATGCAGAAGGGAAACAGATAA
ATGGAAAACAGCGTGCCTTAATAATACGCTTAACTTCTGTGCAGATAACA
CGAACGAATCAGAAAAGAGATTTGGTACAGGGGTCAAATGTGGTAAACCG
CATCCTATTTGCGAATTACCTTGTTGGCTTGTTAGTTCTGAGAGTGGAGG
CAAGCTTGTTGACAAGGACAAAGATTGTTATTGCTACAATTCGGCAAGCA
TTACTGATCAGTCGCAAATATGGATCGTTTGTTTCGCACTGGCTACCTTC
TTGTTAAGGTTATTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022845-exon-sc0000435-1491911889:50131..50189 | TCONS_00022845-exon-sc0000435-1491911889:50131..50189 | Clytia hemisphaerica | exon |
| TCONS_00022845-exon-sc0000435-1510915933:50131..50189 | TCONS_00022845-exon-sc0000435-1510915933:50131..50189 | Clytia hemisphaerica | exon |
| TCONS_00022845-exon-sc0000435-1575043694:50131..50189 | TCONS_00022845-exon-sc0000435-1575043694:50131..50189 | Clytia hemisphaerica | exon |
| TCONS_00022845-exon-sc0000435-1491911889:50769..51832 | TCONS_00022845-exon-sc0000435-1491911889:50769..51832 | Clytia hemisphaerica | exon |
| TCONS_00022845-exon-sc0000435-1510915933:50769..51832 | TCONS_00022845-exon-sc0000435-1510915933:50769..51832 | Clytia hemisphaerica | exon |
| TCONS_00022845-exon-sc0000435-1575043694:50769..51832 | TCONS_00022845-exon-sc0000435-1575043694:50769..51832 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000435 | supercontig | sc0000435:50131..51832 + |
Blast
The following BLAST results are available for this feature:
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