TCONS_00022841 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022841
Unique NameTCONS_00022841
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length794

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022841 ID=TCONS_00022841|Name=TCONS_00022841|organism=Clytia hemisphaerica|type=transcript|length=794bp
AGTCGCCAGTTTATGAAACCCTTGAGGAAGGTAGCATGTGCATTTGAATG
AAGGTAGAATGTGCATTTATCTCACCAAACTTGCAAAGTGCAAAAGTTAT
AAAtgaagtgcaaaaaaaaacaaaaaaactgacgctCACAAGAAAAGAAA
TTGCAACAATAGAAAGAGGGAAGAGTGTACGAACTGTTAAACAAATGATC
CACATTACAGCAACGAATGCTCGAAAACCAACGCAGTCGAAAAATTCCAG
CCTTCCAGATGTATCAGAAACGTTCAAAGAATCGATGATCCAGGGAAAGG
TAGAAGCTGCGGTCCACTTGTTGTCCGAATGTGAAGATCTTGGTGTGCTT
TCCCTTGACatagaaataatcaaaatattgaacGAGAAACACTCTGAAGA
AAGCTCGCTGTTTGATGAAATGCTTTTTACCTTAGGAATATGAAAATAGC
AATTTCAACAGtgctaaaaagatatttgaggCGGATGACGGAAAAATTGC
TACAAATTGATGAGGACAATGCTTTCAATTCGATCAACAGAAAAGTGGCA
ATGTATTACCTAAACATCTCATTTCCACGATTTGCGAAATTCGTGCAAAA
TTCATACGCATGTCCAATGCTAAAACCAGCACGTCTGTTCGTTACTGGTG
TCAAAGAACTGGTATCGAAAGAGGAGACAACGCATGGCGATCCAATAGCC
ATGACAATATACTCGCCAGTGGTTTTGTCACTTCTAGAAGAAGCAGATTG
CAAAGCTAAGAAATCGTGTTTGCTGATGATTTCACTGGTCTTGG
Run BLAST on NCBI

protein sequence of TCONS_00022841-protein

>TCONS_00022841-protein ID=TCONS_00022841-protein|Name=TCONS_00022841-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MKVECAFISPNLQSAKVINEVQKKTKKLTLTRKEIATIERGKSVRTVKQM
IHITATNARKPTQSKNSSLPDVSETFKESMIQGKVEAAVHLLSECEDLGV
LSLDIEIIKILNEKHSEESSLFDEMLFTLGI
Run BLAST on NCBI

transcript from alignment at sc0000434:264738..265531

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022841 ID=TCONS_00022841|Name=TCONS_00022841|organism=Clytia hemisphaerica|type=transcript|length=794bp|location=Sequence derived from alignment at sc0000434:264738..265531 (Clytia hemisphaerica)
CCAAGACCAGTGAAATCATCAGCAAACACGATTTCTTAGCTTTGCAATCT
GCTTCTTCTAGAAGTGACAAAACCACTGGCGAGTATATTGTCATGGCTAT
TGGATCGCCATGCGTTGTCTCCTCTTTCGATACCAGTTCTTTGACACCAG
TAACGAACAGACGTGCTGGTTTTAGCATTGGACATGCGTATGAATTTTGC
ACGAATTTCGCAAATCGTGGAAATGAGATGTTTAGGTAATACATTGCCAC
TTTTCTGTTGATCGAATTGAAAGCATTGTCCTCATCAATTTGTAGCAATT
TTTCCGTCATCCGcctcaaatatctttttagcaCTGTTGAAATTGCTATT
TTCATATTCCTAAGGTAAAAAGCATTTCATCAAACAGCGAGCTTTCTTCA
GAGTGTTTCTCgttcaatattttgattatttctatGTCAAGGGAAAGCAC
ACCAAGATCTTCACATTCGGACAACAAGTGGACCGCAGCTTCTACCTTTC
CCTGGATCATCGATTCTTTGAACGTTTCTGATACATCTGGAAGGCTGGAA
TTTTTCGACTGCGTTGGTTTTCGAGCATTCGTTGCTGTAATGTGGATCAT
TTGTTTAACAGTTCGTACACTCTTCCCTCTTTCTATTGTTGCAATTTCTT
TTCTTGTGagcgtcagtttttttgtttttttttgcacttcaTTTATAACT
TTTGCACTTTGCAAGTTTGGTGAGATAAATGCACATTCTACCTTCATTCA
AATGCACATGCTACCTTCCTCAAGGGTTTCATAAACTGGCGACT

Coding sequence (CDS) from alignment at sc0000434:264738..265531

>TCONS_00022841 ID=TCONS_00022841|Name=TCONS_00022841|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0000434:264738..265531 (Clytia hemisphaerica)
TCATATTCCTAAGGTAAAAAGCATTTCATCAAACAGCGAGCTTTCTTCAG
AGTGTTTCTCgttcaatattttgattatttctatGTCAAGGGAAAGCACA
CCAAGATCTTCACATTCGGACAACAAGTGGACCGCAGCTTCTACCTTTCC
CTGGATCATCGATTCTTTGAACGTTTCTGATACATCTGGAAGGCTGGAAT
TTTTCGACTGCGTTGGTTTTCGAGCATTCGTTGCTGTAATGTGGATCATT
TGTTTAACAGTTCGTACACTCTTCCCTCTTTCTATTGTTGCAATTTCTTT
TCTTGTGagcgtcagtttttttgtttttttttgcacttcaTTTATAACTT
TTGCACTTTGCAAGTTTGGTGAGATAAATGCACATTCTACCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012837XLOC_012837Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022841-proteinTCONS_00022841-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022841-exon-sc0000434-1491911889:264738..265531TCONS_00022841-exon-sc0000434-1491911889:264738..265531Clytia hemisphaericaexon
TCONS_00022841-exon-sc0000434-1510915933:264738..265531TCONS_00022841-exon-sc0000434-1510915933:264738..265531Clytia hemisphaericaexon
TCONS_00022841-exon-sc0000434-1575043694:264738..265531TCONS_00022841-exon-sc0000434-1575043694:264738..265531Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000434supercontigsc0000434:264738..265531 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0606457	0.295696	0.205999	0.0671791	0	0.129254	0.311879	0.0729942	0	0	0.0614422	0.0403897	0.887338	1.08906	0.550986	0.295646	0.455265	0.279979	1.86956	2.02383	0.293179	0.429007	0.0695352	0.442523	0	0	0.332629	0.976225	0.33656	0.0685803
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022841 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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