TCONS_00022836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022836
Unique NameTCONS_00022836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022836 ID=TCONS_00022836|Name=TCONS_00022836|organism=Clytia hemisphaerica|type=transcript|length=601bp
AGCTCCGTACCGATTTTCCACTACCCTTCAGATAGAGAATGTTGCAGCCC
AAAACGAAAAAGTAGTCCTTCAAACATCTCTCCCGGACCTACAATCATTC
CGAGTCCTTCAGAACTGACAAGTCCGAAATCCATGCTTCCTCTATCGCCT
TTCGGATACCACAAACACCCAGGAGCACCAAGCCTTGCTAGCCTGAGTGG
AAGTGTTTTCCCATTGATGGTGCGGTCGAAAGGGCCTCCTATGAAAACGT
GCGCTACCTGTAAAAGAAGTATACACCGGAACGCTCCAGTTTGTCCGATT
TGTAAAGCAAAAAGTCACTCAAAGAACCCGAAGAAGAGAAAAGTCTCAGA
ATAAGTAAATGGagaaattcaaataaaatgcaTTATAAAAAAGTGGAGAG
GTTGGTGATTTCGCAAAATGTCCTctcaaaagtacaaaatatgTACCCTC
CTACCTTCCTACCCTACGATTCGTAAGGAAGCACCCAATTTCgttaaatt
aatttttcgtTTGTATATAACTTTTTGTAGATAAAATAATATTCCATGTA
GAAAaagtaaatctttttttttgtgcAAAGTTGTAGAAAGTAGAATTCCA
G
Run BLAST on NCBI

protein sequence of TCONS_00022836-protein

>TCONS_00022836-protein ID=TCONS_00022836-protein|Name=TCONS_00022836-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
SSVPIFHYPSDRECCSPKRKSSPSNISPGPTIIPSPSELTSPKSMLPLSP
FGYHKHPGAPSLASLSGSVFPLMVRSKGPPMKTCATCKRSIHRNAPVCPI
CKAKSHSKNPKKRKVSE
Run BLAST on NCBI

transcript from alignment at sc0000434:4065..4665

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022836 ID=TCONS_00022836|Name=TCONS_00022836|organism=Clytia hemisphaerica|type=transcript|length=601bp|location=Sequence derived from alignment at sc0000434:4065..4665 (Clytia hemisphaerica)
CTGGAATTCTACTTTCTACAACTTTgcacaaaaaaaaagatttacttTTT
CTACATGGAATATTATTTTATCTACAAAAAGTTATATACAAacgaaaaat
taatttaacGAAATTGGGTGCTTCCTTACGAATCGTAGGGTAGGAAGGTA
GGAGGGTAcatattttgtacttttgagAGGACATTTTGCGAAATCACCAA
CCTCTCCACTTTTTTATAAtgcattttatttgaatttctCCATTTACTTA
TTCTGAGACTTTTCTCTTCTTCGGGTTCTTTGAGTGACTTTTTGCTTTAC
AAATCGGACAAACTGGAGCGTTCCGGTGTATACTTCTTTTACAGGTAGCG
CACGTTTTCATAGGAGGCCCTTTCGACCGCACCATCAATGGGAAAACACT
TCCACTCAGGCTAGCAAGGCTTGGTGCTCCTGGGTGTTTGTGGTATCCGA
AAGGCGATAGAGGAAGCATGGATTTCGGACTTGTCAGTTCTGAAGGACTC
GGAATGATTGTAGGTCCGGGAGAGATGTTTGAAGGACTACTTTTTCGTTT
TGGGCTGCAACATTCTCTATCTGAAGGGTAGTGGAAAATCGGTACGGAGC
T

Coding sequence (CDS) from alignment at sc0000434:4065..4665

>TCONS_00022836 ID=TCONS_00022836|Name=TCONS_00022836|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at sc0000434:4065..4665 (Clytia hemisphaerica)
TTATTCTGAGACTTTTCTCTTCTTCGGGTTCTTTGAGTGACTTTTTGCTT
TACAAATCGGACAAACTGGAGCGTTCCGGTGTATACTTCTTTTACAGGTA
GCGCACGTTTTCATAGGAGGCCCTTTCGACCGCACCATCAATGGGAAAAC
ACTTCCACTCAGGCTAGCAAGGCTTGGTGCTCCTGGGTGTTTGTGGTATC
CGAAAGGCGATAGAGGAAGCATGGATTTCGGACTTGTCAGTTCTGAAGGA
CTCGGAATGATTGTAGGTCCGGGAGAGATGTTTGAAGGACTACTTTTTCG
TTTTGGGCTGCAACATTCTCTATCTGAAGGGTAGTGGAAAATCGGTACGG
AGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012832XLOC_012832Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022836-exon-sc0000434-1491911889:4065..4665TCONS_00022836-exon-sc0000434-1491911889:4065..4665Clytia hemisphaericaexon
TCONS_00022836-exon-sc0000434-1510915933:4065..4665TCONS_00022836-exon-sc0000434-1510915933:4065..4665Clytia hemisphaericaexon
TCONS_00022836-exon-sc0000434-1575043694:4065..4665TCONS_00022836-exon-sc0000434-1575043694:4065..4665Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022836-proteinTCONS_00022836-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000434supercontigsc0000434:4065..4665 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0905044	0.0882561	0.409895	1.00255	0	0.192892	0.232716	0.326798	0	0	0	0	4.15322	3.56305	0	0.0551509	7.0659	5.08355	8.56253	12.1817	3.41269	3.07309	1.55656	1.03777	3.40097	2.25478	1.3651	2.38396	0	0.102346
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018482Znf-C4H2
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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