TCONS_00022830 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022830
Unique NameTCONS_00022830
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022830 ID=TCONS_00022830|Name=TCONS_00022830|organism=Clytia hemisphaerica|type=transcript|length=657bp
aaaaaagttggatggagtcaaaatataataaacgaATAATTTGGTGAccg
atattttcaaattttattggaagaaaaatcaatgtcattTTGACCTTACA
CTGAGCTTATATTAAACATTATTttggaaaatggaaaattgttGCTCTAA
CGAGATGAACCATTGTTACTGTAACCATATAAATGCTAAAAGGACTTCTA
TCAAACATATCTGGATGTTTTGGCTTGTGTTTATCTCCCTAATATCAGGG
ACGTTATGTGATGGGGGTACTGAAATACAAGGTGTTCAGGCATCAGGGAA
TATGTTTAATGAGATAACGATGGAGAATTTTGATCAAATCACCAAAGATA
AAGATATTATGCTTATATTGTTTTATATGCCATGGTGTGGCCATTGCAAA
GCCTTACAACCAGAATGGGAGAAAGCATCCAAGGTATTGGAAGACAATCG
CGAATATGTTCTCGGACGATCAAATTGCGATGGATCGGGAAAACCATTAT
GTCAAAAAGTcaatgttgaaatgtatccCGATATCCGATTATATCGACAT
GGAAAATATATAGAATCTTATGAGGGGGACAGGAAAGCAGAATCCATTCT
TGAGTTTGTGCAACGTGCTCAATCAACAACCGGTCGTGTCGGCTCCTCCC
CGCCANT
Run BLAST on NCBI

transcript from alignment at sc0000434:98951..101827-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022830 ID=TCONS_00022830|Name=TCONS_00022830|organism=Clytia hemisphaerica|type=transcript|length=2877bp|location=Sequence derived from alignment at sc0000434:98951..101827- (Clytia hemisphaerica)
AAAAAAGTTGGATGGAGTCAAAATATAATAAACGAATAATTTGGTGACCG
ATATTTTCAAATTTTATTGGAAGAAAAATCAATGTCATTTTGACCTTACA
CTGAGCTTATATTAAACATTATTTTGGAAAATGGAAAATTGTTGCTCTAA
CGAGATGAACCATTGTTACTGTAACCATATAAATGCTAAAAGGACTTCTA
TCAAACATATCTGGATGTTTTGGCTTGTGTTTATCTCCCTAATATCAGGG
ACGTTATGTGATGGGGGTACTGAAATACAAGGTGTTCAGGCATCAGGGAA
TATGTTTAATGAGATAACGATGGAGAATTTTGATCAAATCACCAAAGATA
AAGATATTATGCTTATATTGTTTTATATGCCATGGTAAGGCTCATTTCAA
TAATTCTTCAATAATTGTACATATTGTACCTTTTTCGAATTTCAGCGGTA
AACATCGCTGATTCGTAAAGGGTAGTTAACCTAGGCTAGAAGGTCCGGAA
GATTTGCAGTATTTTAGTCGGATATTTTTTTCATAATGGTGTAGTCATTG
TGAAGTTTGGCTTTTAGATGTGACAAATAGTTTCGAAGTTTGACTCTCCC
GCATAGGCCCGTCATTCGTTTACCGTGTAAATTGGTCTAATGTCGACATA
GGTCATCTAGTTCCGACACCTTTTTCAGAGATTGAATCACTGAATCACTG
ATTGAAAAAACATTTTTTTCCCTGACCACAAAGCAAATAAATAAGGAGAT
CAGCAATTCCGGTCTTCCTTATTAACCCCAGCTTTAATGTTTGGTGTCAG
AATTAGAAGGGGGTGTCGGCATTAGATCAACAGTACTTGTCAATACAGAA
TTCAAGATGAACTTATTGAGGGCATGAACATATCAACGACTGGACGTCTA
TCTTCAATTGTCTCTATGAAGTGAGCTTCGTTGCCGCCTGATTTTAAATC
TGGGCAATATTCAGTCACGAAAGTAGTTCTTTGAATTACTTAGCTAAAAA
GATGAATCAAAATTTATGATTTTAACGAGGTGGTAACGANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAAAATGCACTCTAAGGGTATGATTTTCACTGATTTTTGCTGCACTGT
AAGGGTGCAATTTTAAAAGCCAATTTTTGGCCCGCACATACCGTCAGTCC
GCAAAACCAGTGCCACCCCCGGGGGTAACGAAGTTAGCTGTACTTTTTAC
AAAAATACAAAGGAGATGGATGTCCAGTCTTTTATTCGTTCATGTTGTGA
GATAAGATAATTTGATGTATAGCTTCGTTATAAACACGGTAAGGATAATT
CGTAGGATCATTTCAATCTGTTATTTCTCTCTACATAAAGGTGTGGCCAT
TGCAAAGCCTTACAACCAGAATGGGAGAAAGCATCCAAGGTATTGGAAGA
CAATCGCGAATATGTTCTCGGACGATCAAATTGCGATGGATCGGGAAAAC
CATTATGTCAAAAAGTCAATGTTGAAATGTATCCCGATATCCGATTATAT
CGACATGGAAAATATATAGAATCTTATGAGGGGGACAGGAAAGCAGGTAA
AAGACTTGTTTTTCGCTTGGCACAAAAATTGTCAGAAATATAGTATGTCC
GGAAAAAAATAGAGGAGGACTTTTAAAAAGAATAACTTTCGTTAATTATA
CCAATTCAACATCGTGCATAAATACCCTATCGGGAAAATAGTCGAAATAT
GTACAGTACCTGTATTACAATGAAAGATTTTGGCCGAGGAGAATTTAGTT
ATTTCATTTAAAATTTGCACCAACCACCTGAGTTAACCAATTCAATATTC
CCCTAACTCGATATTATTTATTGCACCTCACCTCGCAAACCCTGACAACA
AGTTGTTGTTTTTAATTCGACCTGTATGTATCTTGCGAACCCTGATCCTA
TGTGAGTTGAGGTTAGAGGTTAGTTAACTCGGAATATTTGGATGTGCTGG
ATTTAAGCTAATCATTAGCCCATTTTATTATATTTTAAATTGTCCTCCTT
GGGGACTAAAAATATTAATTTTATACACCTTTTCGACTGTAGTCGCGCGG
TCAGGCGCGTGCCATTTTATTATTTAATTTACCATCCTAAACTTGATCCA
ATCCTTTTTATACACTTTTTTGTTGCCTTTAAGTAGGTGCGAGAAAGACT
GGGACGGTTTTAGGGTGGTAAAACGGACAAAAAAATGTCCGCGCGGCAAT
TGAAGGCTACGGTCGAAAAGGTTTATTGTATGATGAAAATTGACTTTTTA
TATCACACCCAGAAAATGAAATGAATTAGTATTTTGAAACCTATCTATTT
ACTTTACTAGAATCCATTCTTGAGTTTGTGCAACGTGCTCAATCAACAAC
CGGTCGTGTCGGCTCCTCCCCGCCANT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012827XLOC_012827Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022830-exon-sc0000434-1575043694:101444..101827TCONS_00022830-exon-sc0000434-1575043694:101444..101827Clytia hemisphaericaexon
TCONS_00022830-exon-sc0000434-1575043694:99782..99987TCONS_00022830-exon-sc0000434-1575043694:99782..99987Clytia hemisphaericaexon
TCONS_00022830-exon-sc0000434-1575043694:98951..99017TCONS_00022830-exon-sc0000434-1575043694:98951..99017Clytia hemisphaericaexon
TCONS_00022830-exon-sc0000434-1510915933:101444..101827TCONS_00022830-exon-sc0000434-1510915933:101444..101827Clytia hemisphaericaexon
TCONS_00022830-exon-sc0000434-1510915933:99782..99987TCONS_00022830-exon-sc0000434-1510915933:99782..99987Clytia hemisphaericaexon
TCONS_00022830-exon-sc0000434-1510915933:98951..99017TCONS_00022830-exon-sc0000434-1510915933:98951..99017Clytia hemisphaericaexon
TCONS_00022830-exon-sc0000434-1491911889:101444..101827TCONS_00022830-exon-sc0000434-1491911889:101444..101827Clytia hemisphaericaexon
TCONS_00022830-exon-sc0000434-1491911889:99782..99987TCONS_00022830-exon-sc0000434-1491911889:99782..99987Clytia hemisphaericaexon
TCONS_00022830-exon-sc0000434-1491911889:98951..99017TCONS_00022830-exon-sc0000434-1491911889:98951..99017Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000434supercontigsc0000434:98951..101827 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.188126	0	1.11078	1.40441	0	0	1.23239	0.444278	0.429256	0.470827	0.635731	0.671986	0.225869	0.822832	0	0	0	0.310268	0.345781	0.118051	0.293254	0.450981	0	0	0	0
Blast
[Close]
BLAST of TCONS_00022830 vs. Swiss-Prot (Human)
Match: PDIA4 (Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 9.723e-18
Identity = 38/100 (38.00%), Postives = 63/100 (63.00%), Query Frame = 2 
Query:  314 ITMENFDQITKDKDIMLILFYMPWCGHCKALQPEWEKASKVLEDNREYVLGRSNCDGSGKP-LCQKVNVEMYPDIRLYRHGKYIESYEGDRKAESILEFV 610
            +T ENFD++  D DI+L+ FY PWCGHCK L PE+EKA+K L   R   +  +  D + +  L ++ +V  YP ++++R G+  + Y G R+   I++++
Sbjct:  182 LTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELS-KRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYD-YNGPREKYGIVDYM 279
The following BLAST results are available for this feature:
BLAST of TCONS_00022830 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDIA49.723e-1838.00Protein disulfide-isomerase A4 OS=Homo sapiens GN=... [more]
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