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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022813 ID=TCONS_00022813|Name=TCONS_00022813|organism=Clytia hemisphaerica|type=transcript|length=2461bpRun BLAST on NCBI protein sequence of TCONS_00022813-protein >TCONS_00022813-protein ID=TCONS_00022813-protein|Name=TCONS_00022813-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp MLRRLLFGNPYETRTEIEGVVQEIDDNESGHNFDEVQILSGHNDIVDLIIRun BLAST on NCBI transcript from alignment at sc0000434:53433..66094+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022813 ID=TCONS_00022813|Name=TCONS_00022813|organism=Clytia hemisphaerica|type=transcript|length=12662bp|location=Sequence derived from alignment at sc0000434:53433..66094+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000434:53433..66094+ >TCONS_00022813 ID=TCONS_00022813|Name=TCONS_00022813|organism=Clytia hemisphaerica|type=CDS|length=21744bp|location=Sequence derived from alignment at sc0000434:53433..66094+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022813 vs. Swiss-Prot (Human)
Match: WDR41 (WD repeat-containing protein 41 OS=Homo sapiens GN=WDR41 PE=1 SV=3) HSP 1 Score: 123.635 bits (309), Expect = 1.075e-29 Identity = 122/454 (26.87%), Postives = 219/454 (48.24%), Query Frame = 2
Query: 86 MLRRLLFGNPYETRTEIEGVVQEIDDNESGHNFDEVQILSGHXXXXXXXXXXXXQRILTTGQDKKGIVWDCKTGKMVCELVGHKRXXXXXXXXRKYLDSIEDFSDVIVTASSDEAIKIWDVLTGRCKRTITEHKGTVKCFSIGRSEPCVVITAGQDICLWDASFNLLAIFQRNSLDYIHSAIFVKTDRIVVATDQPTLVVYNV-PTLNDDDDVSQQITECKKLLPHRESVTALTLVSDAIFTSASMDGGIIIW-TTHRLVATRKFNHYD--------NFMNITDHTYPYSVQHLMVAESHYVLAAIGCGFAIFDARFDDSKKCIARVTNAHHSQVTALALLNKGKYLATASLDGTVRLWSGVPLDKDVAQKEQPMLKSLLSRLFER----NLSEVKRFPL----------PLHLVGQCYAHSNSVKGITECGNEGFVSFDNDGLVILWKDSLKK 1375
MLR L+ G + +Q I + ++ + + E+ +L H+DIV ++ +DD R + G D +VW+ +TG+ + EL GH + ITA I L+S E+ + +I+TAS+D + +WD T R + I+ + TVKC ++ + V ++ G D+C+W+ +LL S I + + + + +V A + ++ V PT + + I E K+LL H++++ +L V+D F + S G +IIW + + N +D + + + S+ H E + V AA+G G ++ + K+ IA AH S V +A L + L + S DG+VR+W ++ +K+Q + + + F +S+ P+ L L+G HS+SV+ + G V+ D L+ILWK+ ++
Sbjct: 1 MLRWLIGGGREPQGLAEKSPLQTIGEEQTQNPYTELLVLKAHHDIVRFLVQLDDYRFASAGDDGIVVVWNAQTGEKLLELNGHTQKITAIITF-PSLESCEEKNQLILTASADRTVIVWDGDTTRQVQRISCFQSTVKCLTVLQRLD-VWLSGGNDLCVWNRKLDLLCKTSHLSDTGISALVEIPKNCVVAAVGKELIIFRLVAPT---EGSLEWDILEVKRLLDHQDNILSLINVNDLSFVTGSHVGELIIWDALDWTMQAYERNFWDPSPQLDTQQEIKLCQKSNDISIHHFTCDEEN-VFAAVGRGLYVYSLQM---KRVIACQKTAHDSNVLHVARL-PNRQLISCSEDGSVRIW-------ELREKQQLAAEPVPTGFFNMWGFGRVSKQASQPVKKQQENATSCSLELIGDLIGHSSSVEMFLYFEDHGLVTCSADHLIILWKNGERE 437 The following BLAST results are available for this feature:
BLAST of TCONS_00022813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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