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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022793 ID=TCONS_00022793|Name=TCONS_00022793|organism=Clytia hemisphaerica|type=transcript|length=1130bp
TCCAATCTCCACACATACAGAATCAAACAGAATACTCTGGCATAGCAGAC
GCTATCTGTCAAACTATGGTACGACAAGGATACTCGGCAAAGCCAGGTGG
AAACCCAAACCGTAAGCCCTTCACCCCAACCACAGAACAGAAAAAAGACC
TAGAAAACAAGACGTGCTTCATATGTCACCAAACCGGACACCAACGGAAA
GACTGCCCCAAGAAAAAGAAGGACACAGTCGGATGTCTTAACACCCCAAA
GGAACACACACACACACTCGAAAAAATAGAGAAGGCCGAAGAAGTCGACT
TTCTCTACAACATCACAGACACAACACCAACGGTCACACTGACCGGAGAA
AACGAACAACGATTTGAAGCTCTGTTTGATACAGGCGCGTCACGTACAAC
GATCCCACAAGCGAAGGCTGACCGTTTGGGGATAGACTACAAATCCAACA
AGAACTGCGTTGAGCTCGTCACCGCAAGCGGCTCAAGAATCAAGACTCTA
GGGAAAGGAACTCTCAGATTCGCCCTGGACTCAGTAAACGGAACAACAAA
GATAGTGGAAGGAGAAGTTTACGTACTTCAAGACTCAATCAACAAGGCAC
TCATTGGCAGAAATTTCTACATGAAATACAACATCTGCACCGAAGGTCTT
GACGGCCAATGGTTTGTCTCAACAGTCGAATCATTGAGCGACCACATGAA
CCTAAAGAAGCGAGAAACAGATTGAAAACGAGACCAGTATACTGACCATG
AATGGATATGTGAAGTATCACTGAAAGTAGAATGTCCTACACCCAAGACA
GTAGCACAGAAGAATCATCCAAGAAAGAGTGAGTTCTTCTCGAAAAAATG
GATCCAGAAATGGGAAAATATCTTCGAGCAATTCACAGAAGGAGCTGACA
TCCCACCAGTACACCTGAAACTCAATAATCCCAACATACTCCCACCAAAC
CAACGACCTTACCAAATATCCCAAGACAAACTCGTAAGTCTGAAGACTAT
GCTGAAGAAAATGGTCAACGAAAAACAGATCAAAACATCCCAATCTCAAC
GAGCAAGCCCCATCGTCATGGTAGAAAAACCTGACCGCAAAGATGAAAAC
GGTGACCAACTTTATCGTTTGACGACCAAC Run BLAST on NCBI protein sequence of TCONS_00022793-protein >TCONS_00022793-protein ID=TCONS_00022793-protein|Name=TCONS_00022793-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
QSPHIQNQTEYSGIADAICQTMVRQGYSAKPGGNPNRKPFTPTTEQKKDL
ENKTCFICHQTGHQRKDCPKKKKDTVGCLNTPKEHTHTLEKIEKAEEVDF
LYNITDTTPTVTLTGENEQRFEALFDTGASRTTIPQAKADRLGIDYKSNK
NCVELVTASGSRIKTLGKGTLRFALDSVNGTTKIVEGEVYVLQDSINKAL
IGRNFYMKYNICTEGLDGQWFVSTVESLSDHMNLKKRETD Run BLAST on NCBI transcript from alignment at sc0000432:84919..86048 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022793 ID=TCONS_00022793|Name=TCONS_00022793|organism=Clytia hemisphaerica|type=transcript|length=1130bp|location=Sequence derived from alignment at sc0000432:84919..86048 (Clytia hemisphaerica)
GTTGGTCGTCAAACGATAAAGTTGGTCACCGTTTTCATCTTTGCGGTCAG
GTTTTTCTACCATGACGATGGGGCTTGCTCGTTGAGATTGGGATGTTTTG
ATCTGTTTTTCGTTGACCATTTTCTTCAGCATAGTCTTCAGACTTACGAG
TTTGTCTTGGGATATTTGGTAAGGTCGTTGGTTTGGTGGGAGTATGTTGG
GATTATTGAGTTTCAGGTGTACTGGTGGGATGTCAGCTCCTTCTGTGAAT
TGCTCGAAGATATTTTCCCATTTCTGGATCCATTTTTTCGAGAAGAACTC
ACTCTTTCTTGGATGATTCTTCTGTGCTACTGTCTTGGGTGTAGGACATT
CTACTTTCAGTGATACTTCACATATCCATTCATGGTCAGTATACTGGTCT
CGTTTTCAATCTGTTTCTCGCTTCTTTAGGTTCATGTGGTCGCTCAATGA
TTCGACTGTTGAGACAAACCATTGGCCGTCAAGACCTTCGGTGCAGATGT
TGTATTTCATGTAGAAATTTCTGCCAATGAGTGCCTTGTTGATTGAGTCT
TGAAGTACGTAAACTTCTCCTTCCACTATCTTTGTTGTTCCGTTTACTGA
GTCCAGGGCGAATCTGAGAGTTCCTTTCCCTAGAGTCTTGATTCTTGAGC
CGCTTGCGGTGACGAGCTCAACGCAGTTCTTGTTGGATTTGTAGTCTATC
CCCAAACGGTCAGCCTTCGCTTGTGGGATCGTTGTACGTGACGCGCCTGT
ATCAAACAGAGCTTCAAATCGTTGTTCGTTTTCTCCGGTCAGTGTGACCG
TTGGTGTTGTGTCTGTGATGTTGTAGAGAAAGTCGACTTCTTCGGCCTTC
TCTATTTTTTCGAGTGTGTGTGTGTGTTCCTTTGGGGTGTTAAGACATCC
GACTGTGTCCTTCTTTTTCTTGGGGCAGTCTTTCCGTTGGTGTCCGGTTT
GGTGACATATGAAGCACGTCTTGTTTTCTAGGTCTTTTTTCTGTTCTGTG
GTTGGGGTGAAGGGCTTACGGTTTGGGTTTCCACCTGGCTTTGCCGAGTA
TCCTTGTCGTACCATAGTTTGACAGATAGCGTCTGCTATGCCAGAGTATT
CTGTTTGATTCTGTATGTGTGGAGATTGGA Coding sequence (CDS) from alignment at sc0000432:84919..86048 >TCONS_00022793 ID=TCONS_00022793|Name=TCONS_00022793|organism=Clytia hemisphaerica|type=CDS|length=723bp|location=Sequence derived from alignment at sc0000432:84919..86048 (Clytia hemisphaerica)
TCAATCTGTTTCTCGCTTCTTTAGGTTCATGTGGTCGCTCAATGATTCGA
CTGTTGAGACAAACCATTGGCCGTCAAGACCTTCGGTGCAGATGTTGTAT
TTCATGTAGAAATTTCTGCCAATGAGTGCCTTGTTGATTGAGTCTTGAAG
TACGTAAACTTCTCCTTCCACTATCTTTGTTGTTCCGTTTACTGAGTCCA
GGGCGAATCTGAGAGTTCCTTTCCCTAGAGTCTTGATTCTTGAGCCGCTT
GCGGTGACGAGCTCAACGCAGTTCTTGTTGGATTTGTAGTCTATCCCCAA
ACGGTCAGCCTTCGCTTGTGGGATCGTTGTACGTGACGCGCCTGTATCAA
ACAGAGCTTCAAATCGTTGTTCGTTTTCTCCGGTCAGTGTGACCGTTGGT
GTTGTGTCTGTGATGTTGTAGAGAAAGTCGACTTCTTCGGCCTTCTCTAT
TTTTTCGAGTGTGTGTGTGTGTTCCTTTGGGGTGTTAAGACATCCGACTG
TGTCCTTCTTTTTCTTGGGGCAGTCTTTCCGTTGGTGTCCGGTTTGGTGA
CATATGAAGCACGTCTTGTTTTCTAGGTCTTTTTTCTGTTCTGTGGTTGG
GGTGAAGGGCTTACGGTTTGGGTTTCCACCTGGCTTTGCCGAGTATCCTT
GTCGTACCATAGTTTGACAGATAGCGTCTGCTATGCCAGAGTATTCTGTT
TGATTCTGTATGTGTGGAGATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022793-exon-sc0000432-1491911889:84919..86048 | TCONS_00022793-exon-sc0000432-1491911889:84919..86048 | Clytia hemisphaerica | exon |
| TCONS_00022793-exon-sc0000432-1510915933:84919..86048 | TCONS_00022793-exon-sc0000432-1510915933:84919..86048 | Clytia hemisphaerica | exon |
| TCONS_00022793-exon-sc0000432-1575043694:84919..86048 | TCONS_00022793-exon-sc0000432-1575043694:84919..86048 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000432 | supercontig | sc0000432:84919..86048 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
| GO:0004190 | aspartic-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004190 |
aspartic-type endopeptidase activity |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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