TCONS_00022792 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022792
Unique NameTCONS_00022792
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length652

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022792 ID=TCONS_00022792|Name=TCONS_00022792|organism=Clytia hemisphaerica|type=transcript|length=652bp
AGCAAACCATTCAAGGTGAACTTGAGGACTTCCAGAAAAATCAAGGCACA
AACATTCACACTCCCCTCGTCCACATACATAGTAAAATTCTATATCGTTT
TGCCAAAGAAAATAAATCGACAAAAAAATCATCTATCAAAGAACCAAGTT
CAGTTTTGAATACCTAAAATCGCAGAAATAATGGCAAAAGAAAAAGACGC
GACGTATGACCAAAAGGCTTACGAAGAACCAAAGTATGTTAACGGAACCT
TACCCATTCCGGACTTTGACACGTTCATCGCACGCacagaaaaatcatca
aaacgaTGGTCACACATCAAAATTGAAAGTATGTCTAACCAGCAAGAACA
CGGAATTCTTATGTACAAGACCGAACAGACCTTCCACATCGCCAAGGCGA
AGGCCGGTTGCGAATATAAAATTCCCGCATCCCAACTTATAGTCTCAGAA
CCTAAGAACGGCCCGTACCGTATATACAAAACAGAAAACTCCTGTGGAGA
AGCCAAAAGATTCTGAATCATAAATCCGCTAGAGGAGATCATCGTGATCA
AATCTATGGGGACCGTGAAGACAGAATCTAGTCGCTTAAAGACCAAATGG
TTACCAAAAGCAGTCAGCATACAACATACAAATCAAATCGTGTTAGAAGC
AG
Run BLAST on NCBI

protein sequence of TCONS_00022792-protein

>TCONS_00022792-protein ID=TCONS_00022792-protein|Name=TCONS_00022792-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MAKEKDATYDQKAYEEPKYVNGTLPIPDFDTFIARTEKSSKRWSHIKIES
MSNQQEHGILMYKTEQTFHIAKAKAGCEYKIPASQLIVSEPKNGPYRIYK
TENSCGEAKRF
Run BLAST on NCBI

transcript from alignment at sc0000432:82044..82695

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022792 ID=TCONS_00022792|Name=TCONS_00022792|organism=Clytia hemisphaerica|type=transcript|length=652bp|location=Sequence derived from alignment at sc0000432:82044..82695 (Clytia hemisphaerica)
CTGCTTCTAACACGATTTGATTTGTATGTTGTATGCTGACTGCTTTTGGT
AACCATTTGGTCTTTAAGCGACTAGATTCTGTCTTCACGGTCCCCATAGA
TTTGATCACGATGATCTCCTCTAGCGGATTTATGATTCAGAATCTTTTGG
CTTCTCCACAGGAGTTTTCTGTTTTGTATATACGGTACGGGCCGTTCTTA
GGTTCTGAGACTATAAGTTGGGATGCGGGAATTTTATATTCGCAACCGGC
CTTCGCCTTGGCGATGTGGAAGGTCTGTTCGGTCTTGTACATAAGAATTC
CGTGTTCTTGCTGGTTAGACATACTTTCAATTTTGATGTGTGACCAtcgt
tttgatgatttttctgtGCGTGCGATGAACGTGTCAAAGTCCGGAATGGG
TAAGGTTCCGTTAACATACTTTGGTTCTTCGTAAGCCTTTTGGTCATACG
TCGCGTCTTTTTCTTTTGCCATTATTTCTGCGATTTTAGGTATTCAAAAC
TGAACTTGGTTCTTTGATAGATGATTTTTTTGTCGATTTATTTTCTTTGG
CAAAACGATATAGAATTTTACTATGTATGTGGACGAGGGGAGTGTGAATG
TTTGTGCCTTGATTTTTCTGGAAGTCCTCAAGTTCACCTTGAATGGTTTG
CT

Coding sequence (CDS) from alignment at sc0000432:82044..82695

>TCONS_00022792 ID=TCONS_00022792|Name=TCONS_00022792|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0000432:82044..82695 (Clytia hemisphaerica)
TCAGAATCTTTTGGCTTCTCCACAGGAGTTTTCTGTTTTGTATATACGGT
ACGGGCCGTTCTTAGGTTCTGAGACTATAAGTTGGGATGCGGGAATTTTA
TATTCGCAACCGGCCTTCGCCTTGGCGATGTGGAAGGTCTGTTCGGTCTT
GTACATAAGAATTCCGTGTTCTTGCTGGTTAGACATACTTTCAATTTTGA
TGTGTGACCAtcgttttgatgatttttctgtGCGTGCGATGAACGTGTCA
AAGTCCGGAATGGGTAAGGTTCCGTTAACATACTTTGGTTCTTCGTAAGC
CTTTTGGTCATACGTCGCGTCTTTTTCTTTTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012805XLOC_012805Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022792-proteinTCONS_00022792-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022792-exon-sc0000432-1491911889:82044..82695TCONS_00022792-exon-sc0000432-1491911889:82044..82695Clytia hemisphaericaexon
TCONS_00022792-exon-sc0000432-1510915933:82044..82695TCONS_00022792-exon-sc0000432-1510915933:82044..82695Clytia hemisphaericaexon
TCONS_00022792-exon-sc0000432-1575043694:82044..82695TCONS_00022792-exon-sc0000432-1575043694:82044..82695Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000432supercontigsc0000432:82044..82695 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.2229	0.255325	0	0.153757	1.12443	0.37385	0.205924	0.517053	0	0.0835926	0	0.320018	0.106524	0.221253	0.284977	0.803448	0.382594	0.246483	0.435797	0.356339	0.680279	0.424946	0.316278	0.333926	0	0	0.487896	0.627852	0.177777	0.181126
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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